Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 2.8e-61 238.4 121 100.0
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 2.5e-25 119.0 187 43.9
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 3.5e-19 98.6 181 40.9
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 1.3e-18 96.7 206 37.4
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 6.2e-16 87.8 73 65.8
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.3e-15 85.9 182 37.4
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 2.3e-15 85.9 168 37.5
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 5.2e-15 84.7 67 64.2
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 1.2e-14 83.6 160 37.5
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 2.6e-14 82.4 158 41.8
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 2.6e-14 82.4 185 34.6
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 3.4e-14 82.0 87 55.2
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 3.4e-14 82.0 157 40.8
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 3.4e-14 82.0 188 34.6
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 4.4e-14 81.6 67 62.7
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 4.4e-14 81.6 101 50.5
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 5.8e-14 81.3 79 63.3
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 9.8e-14 80.5 93 52.7
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 9.8e-14 80.5 55 72.7
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 1.3e-13 80.1 99 49.5
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 1.3e-13 80.1 153 37.9
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.3e-13 80.1 112 47.3
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 1.3e-13 80.1 171 36.3
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 1.3e-13 80.1 72 62.5
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 1.7e-13 79.7 100 49.0
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 1.7e-13 79.7 96 50.0
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 1.7e-13 79.7 121 42.1
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 1.7e-13 79.7 121 42.1
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 1.7e-13 79.7 121 42.1
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 1.7e-13 79.7 48 81.2
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.7e-13 79.7 81 58.0
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 2.2e-13 79.3 121 42.1
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 2.2e-13 79.3 121 42.1
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 3.7e-13 78.6 101 48.5
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 3.7e-13 78.6 100 48.0
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 4.9e-13 78.2 100 48.0
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 6.4e-13 77.8 100 48.0
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 6.4e-13 77.8 100 48.0
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 6.4e-13 77.8 93 50.5
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 6.4e-13 77.8 103 50.5
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 8.3e-13 77.4 161 36.6
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 8.3e-13 77.4 51 76.5
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 8.3e-13 77.4 153 38.6
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 1.1e-12 77.0 75 60.0
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 1.1e-12 77.0 100 48.0
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 1.1e-12 77.0 100 48.0
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 1.1e-12 77.0 100 48.0
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 1.1e-12 77.0 60 66.7
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 1.4e-12 76.6 96 50.0
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 1.4e-12 76.6 96 50.0
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.4e-12 76.6 92 51.1
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 1.9e-12 76.3 96 50.0
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 1.9e-12 76.3 96 50.0
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 1.9e-12 76.3 96 50.0
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 1.9e-12 76.3 49 75.5
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 1.9e-12 76.3 167 32.3
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 1.9e-12 76.3 96 45.8
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.9e-12 76.3 157 38.9
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.9e-12 76.3 159 35.2
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 3.2e-12 75.5 158 35.4
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 3.2e-12 75.5 158 35.4
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 3.2e-12 75.5 47 78.7
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 4.1e-12 75.1 56 67.9
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 5.4e-12 74.7 49 75.5
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 5.4e-12 74.7 158 37.3
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 5.4e-12 74.7 137 38.0
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 7.1e-12 74.3 43 81.4
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 7.1e-12 74.3 110 43.6
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 7.1e-12 74.3 48 81.2
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 7.1e-12 74.3 56 62.5
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 9.2e-12 73.9 49 75.5
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 9.2e-12 73.9 58 65.5
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 1.2e-11 73.6 61 65.6
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 1.2e-11 73.6 56 64.3
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 1.2e-11 73.6 54 68.5
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 1.2e-11 73.6 54 68.5
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 1.2e-11 73.6 59 64.4
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 1.2e-11 73.6 92 48.9
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.2e-11 73.6 70 57.1
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.6e-11 73.2 87 51.7
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 2.1e-11 72.8 49 73.5
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 2.1e-11 72.8 51 70.6
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 2.7e-11 72.4 56 64.3
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 2.7e-11 72.4 120 45.0
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 2.7e-11 72.4 118 43.2
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 3.5e-11 72.0 116 42.2
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 4.6e-11 71.6 99 45.5
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 4.6e-11 71.6 51 66.7
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 6.0e-11 71.2 81 50.6
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 6.0e-11 71.2 49 73.5
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 6.0e-11 71.2 49 71.4
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 6.0e-11 71.2 49 71.4
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 6.0e-11 71.2 49 71.4
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 6.0e-11 71.2 88 44.3
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 6.0e-11 71.2 113 42.5
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 6.0e-11 71.2 113 42.5
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 7.8e-11 70.9 44 77.3
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 7.8e-11 70.9 58 67.2
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 7.8e-11 70.9 49 69.4
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 1.0e-10 70.5 56 62.5
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 1.0e-10 70.5 59 64.4
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 1.0e-10 70.5 113 42.5
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.0e-10 70.5 88 45.5
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 1.0e-10 70.5 49 67.3
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 1.0e-10 70.5 85 49.4
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.0e-10 70.5 55 58.2
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 1.0e-10 70.5 92 45.7
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 1.3e-10 70.1 60 61.7
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 1.3e-10 70.1 49 67.3
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 1.3e-10 70.1 78 50.0
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.3e-10 70.1 96 45.8
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.7e-10 69.7 54 68.5
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.7e-10 69.7 54 68.5
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 1.7e-10 69.7 74 52.7
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 1.7e-10 69.7 49 71.4
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 2.3e-10 69.3 96 46.9
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.3e-10 69.3 96 46.9
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.3e-10 69.3 44 75.0
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.3e-10 69.3 58 63.8
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 2.3e-10 69.3 47 70.2
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 2.3e-10 69.3 47 70.2
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 2.3e-10 69.3 49 67.3
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 2.3e-10 69.3 49 69.4
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 2.3e-10 69.3 48 68.8
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 3.0e-10 68.9 113 41.6
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 3.0e-10 68.9 48 68.8
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 3.9e-10 68.6 95 46.3
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 5.1e-10 68.2 61 54.1
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 6.6e-10 67.8 49 69.4
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 8.6e-10 67.4 58 56.9
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 8.6e-10 67.4 49 67.3
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 8.6e-10 67.4 100 46.0
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.5e-09 66.6 44 72.7
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 1.5e-09 66.6 114 42.1
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.9e-09 66.2 61 60.7
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.9e-09 66.2 63 60.3
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 2.5e-09 65.9 103 41.7
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 4.3e-09 65.1 72 52.8
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 4.3e-09 65.1 61 50.8
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 4.3e-09 65.1 74 55.4
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 5.6e-09 64.7 72 52.8
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 7.3e-09 64.3 58 56.9
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 7.3e-09 64.3 45 68.9
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 9.5e-09 63.9 104 40.4
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 9.5e-09 63.9 49 63.3
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 9.5e-09 63.9 42 73.8
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 1.2e-08 63.5 50 60.0
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 1.2e-08 63.5 54 59.3
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 1.2e-08 63.5 74 48.6
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 2.1e-08 62.8 77 49.4
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 2.1e-08 62.8 138 36.2
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.1e-08 62.8 48 64.6
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 1.4e-07 60.1 92 41.3
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.8e-07 59.7 45 62.2
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 1.8e-07 59.7 50 58.0
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.3e-07 59.3 49 59.2
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 3.1e-07 58.9 88 43.2
Nitab4.5_0000651g0050 Nicotiana tabacum HOM05D004032 ORTHO05D004462 3.1e-07 58.9 99 41.4
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 4.0e-07 58.5 46 60.9
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 6.8e-07 57.8 45 60.0
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 2.0e-06 56.2 47 59.6
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 2.0e-06 56.2 47 59.6
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 2.6e-06 55.8 38 73.7
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 3.4e-06 55.5 100 36.0


User provided reference genes

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