Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 3.5e-107 391.7 209 100.0
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.2e-80 303.5 219 80.4
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 7.5e-54 214.5 213 56.8
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 6.0e-51 204.9 197 65.0
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 4.6e-43 178.7 208 57.7
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 2.8e-40 169.5 227 45.8
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 1.1e-39 167.5 193 58.0
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 8.7e-34 147.9 211 49.8
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 7.9e-27 124.8 198 41.9
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 3.3e-25 119.4 167 42.5
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 4.3e-25 119.0 126 49.2
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 5.6e-25 118.6 214 37.4
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 2.1e-24 116.7 130 50.0
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 3.7e-24 115.9 231 35.1
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 4.8e-24 115.5 236 36.0
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 6.2e-24 115.2 231 35.1
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 6.2e-24 115.2 159 45.3
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 6.2e-24 115.2 130 47.7
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 2.4e-23 113.2 219 39.3
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.0e-23 112.5 221 35.7
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 6.9e-23 111.7 123 50.4
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.2e-22 110.9 231 34.6
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 1.2e-22 110.9 122 46.7
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 1.5e-22 110.5 159 45.9
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 3.4e-22 109.4 119 50.4
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 3.4e-22 109.4 237 33.8
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 4.5e-22 109.0 145 42.8
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 7.6e-22 108.2 156 42.3
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 7.6e-22 108.2 164 42.7
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 1.0e-21 107.8 121 51.2
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.0e-21 107.8 121 51.2
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 1.3e-21 107.5 133 45.1
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.3e-21 107.5 121 50.4
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 1.7e-21 107.1 218 35.8
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.7e-21 107.1 121 51.2
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 1.7e-21 107.1 174 41.4
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 3.8e-21 105.9 146 47.9
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 8.4e-21 104.8 169 42.6
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 8.4e-21 104.8 169 42.6
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 1.9e-20 103.6 127 48.8
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.9e-20 103.6 121 49.6
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 3.2e-20 102.8 149 45.0
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 3.2e-20 102.8 230 35.2
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 4.2e-20 102.4 157 43.9
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 4.2e-20 102.4 126 44.4
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 4.2e-20 102.4 150 42.7
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 7.1e-20 101.7 164 42.7
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 9.3e-20 101.3 151 42.4
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 9.3e-20 101.3 136 45.6
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 9.3e-20 101.3 141 44.0
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 1.2e-19 100.9 201 40.3
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 1.2e-19 100.9 163 42.9
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 1.2e-19 100.9 163 42.9
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 1.2e-19 100.9 214 31.3
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 3.5e-19 99.4 161 41.0
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 4.6e-19 99.0 124 46.8
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 4.6e-19 99.0 167 39.5
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 6.0e-19 98.6 118 46.6
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 1.0e-18 97.8 119 49.6
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 1.8e-18 97.1 140 43.6
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.8e-18 97.1 114 44.7
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 2.3e-18 96.7 115 49.6
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 2.3e-18 96.7 121 47.9
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 3.0e-18 96.3 121 47.1
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 3.0e-18 96.3 89 55.1
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 3.9e-18 95.9 117 45.3
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 5.1e-18 95.5 158 41.1
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 5.1e-18 95.5 133 42.1
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 8.7e-18 94.7 151 39.7
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.1e-17 94.4 129 41.9
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 1.9e-17 93.6 120 43.3
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 1.9e-17 93.6 53 83.0
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 1.9e-17 93.6 120 45.0
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 2.5e-17 93.2 158 38.6
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 3.3e-17 92.8 205 35.1
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.3e-17 92.8 115 46.1
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 3.3e-17 92.8 133 42.1
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 5.7e-17 92.0 84 53.6
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.7e-17 92.0 121 44.6
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 7.4e-17 91.7 150 39.3
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.4e-17 91.7 115 44.3
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.4e-17 91.7 123 44.7
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 7.4e-17 91.7 94 47.9
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 9.6e-17 91.3 150 40.7
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 9.6e-17 91.3 163 38.7
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 1.3e-16 90.9 120 40.8
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.6e-16 90.5 128 44.5
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 1.1e-15 87.8 138 37.0
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 1.1e-15 87.8 106 48.1
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.4e-15 87.4 123 43.9
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.8e-15 87.0 171 40.4
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 2.4e-15 86.7 75 58.7
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.4e-15 86.7 149 40.9
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 3.1e-15 86.3 148 42.6
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 3.1e-15 86.3 94 51.1
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 4.0e-15 85.9 70 58.6
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 6.9e-15 85.1 130 40.0
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 6.9e-15 85.1 175 33.7
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 9.0e-15 84.7 130 40.0
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 9.0e-15 84.7 71 59.2
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 9.0e-15 84.7 71 59.2
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 9.0e-15 84.7 172 35.5
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.5e-14 84.0 112 45.5
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 1.5e-14 84.0 168 36.9
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 2.6e-14 83.2 75 48.0
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 2.6e-14 83.2 78 52.6
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 2.6e-14 83.2 124 44.4
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 7.6e-14 81.6 145 37.2
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 7.6e-14 81.6 124 43.5
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 3.8e-13 79.3 171 34.5
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 5.0e-13 79.0 140 40.7
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 8.4e-13 78.2 100 45.0
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 8.4e-13 78.2 120 39.2
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 1.1e-12 77.8 146 37.7
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 1.4e-12 77.4 130 39.2
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.4e-12 77.4 104 44.2
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 1.9e-12 77.0 108 43.5
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 2.5e-12 76.6 186 31.2
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.2e-12 76.3 104 44.2
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 5.5e-12 75.5 104 43.3
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 7.1e-12 75.1 78 51.3
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 9.3e-12 74.7 99 45.5
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 1.6e-11 73.9 98 44.9
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.6e-11 73.9 100 42.0
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 2.1e-11 73.6 125 39.2
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 6.1e-11 72.0 85 49.4
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.3e-10 70.9 104 43.3
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 3.0e-10 69.7 43 69.8
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 3.9e-10 69.3 64 54.7
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 5.1e-10 68.9 117 39.3
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 5.1e-10 68.9 121 38.8
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 3.3e-09 66.2 121 38.8
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 4.3e-09 65.9 131 34.4
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 4.3e-09 65.9 132 37.9
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 5.7e-09 65.5 101 39.6
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 9.7e-09 64.7 113 38.9
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 1.3e-08 64.3 86 46.5
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 1.3e-08 64.3 111 40.5
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 1.3e-08 64.3 111 40.5
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 1.4e-07 60.8 107 33.6
Nitab4.5_0000425g0070 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.4e-07 60.8 52 63.5
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 1.8e-07 60.5 96 42.7
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 1.8e-07 60.5 96 42.7
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 1.8e-07 60.5 101 39.6
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 2.4e-07 60.1 133 32.3
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 3.1e-07 59.7 96 41.7
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 4.1e-07 59.3 94 37.2
PGSC0003DMG400046169 Solanum tuberosum HOM05D004520 ORTHO05D005520 5.3e-07 58.9 114 34.2
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 9.0e-07 58.2 178 30.3
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.2e-06 57.8 108 32.4
MSTRG.21036 Avicennia marina HOM05D004622 ORTHO05D005431 5.9e-06 55.5 174 27.0
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 1.0e-05 54.7 97 39.2


User provided reference genes

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