Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006673g0010 Nicotiana tabacum HOM05D003021 ORTHO05D002235 3.2e-252 874.8 496 100.0
Nitab4.5_0003021g0020 Nicotiana tabacum HOM05D003021 ORTHO05D002235 5.9e-222 774.2 496 90.3
PGSC0003DMG400033052 Solanum tuberosum HOM05D003021 ORTHO05D002235 8.0e-171 604.4 494 71.9
Peaxi162Scf00013g00052 Petunia axillaris HOM05D003021 ORTHO05D002235 1.8e-154 550.1 497 67.2
Solyc06g069620.1 Solanum lycopersicum HOM05D003021 ORTHO05D002235 1.5e-148 530.4 494 64.8
Sopen06g026920 Solanum pennellii HOM05D003021 ORTHO05D002235 4.5e-137 492.3 464 65.3
CAN.G587.19 Capsicum annuum HOM05D003021 ORTHO05D002235 1.9e-124 450.3 496 57.9
Peaxi162Scf00274g00005 Petunia axillaris HOM05D003021 ORTHO05D022173 5.9e-73 279.3 534 44.9
CAN.G479.38 Capsicum annuum HOM05D003021 ORTHO05D022173 6.4e-59 232.6 538 40.9
Nitab4.5_0001211g0040 Nicotiana tabacum HOM05D003021 ORTHO05D022173 7.3e-55 219.2 691 35.0
Sopen03g034540 Solanum pennellii HOM05D003021 ORTHO05D022173 9.5e-55 218.8 494 40.3
Nitab4.5_0002881g0010 Nicotiana tabacum HOM05D003021 ORTHO05D022173 6.8e-53 212.6 692 35.4
PGSC0003DMG400024656 Solanum tuberosum HOM05D003021 ORTHO05D022173 3.2e-50 203.8 545 38.3
Actinidia09241 Actinidia chinensis HOM05D003021 ORTHO05D002235 9.9e-28 129.0 567 30.3
TAR622G0013 Trochodendron aralioides HOM05D003021 ORTHO05D002235 9.9e-28 129.0 522 28.9
Dinv10680 Davidia involucrata HOM05D003021 ORTHO05D002235 7.8e-25 119.4 526 30.8
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 3.9e-24 117.1 473 33.6
TAR371G0449 Trochodendron aralioides HOM05D003021 ORTHO05D002235 8.7e-24 115.9 508 30.5
Dinv11486 Davidia involucrata HOM05D003021 ORTHO05D002235 3.3e-23 114.0 486 32.3
Actinidia01976 Actinidia chinensis HOM05D003021 ORTHO05D002235 4.3e-23 113.6 474 30.4
TAR629G0828 Trochodendron aralioides HOM05D003021 ORTHO05D002235 1.6e-22 111.7 485 31.3
QL10p018571 Quercus lobata HOM05D003021 ORTHO05D002235 3.1e-21 107.5 551 28.5
Rhsim12G0153000 Rhododendron simsii HOM05D003021 ORTHO05D002235 3.4e-20 104.0 527 27.5
Nitab4.5_0000025g0480 Nicotiana tabacum HOM05D003021 ORTHO05D002235 9.3e-18 95.9 110 65.5
Cfa007625 Carpinus fangiana HOM05D003021 ORTHO05D002235 4.6e-17 93.6 609 25.9
Ca_04869_v3 Cicer arietinum L. HOM05D003021 ORTHO05D002235 1.0e-16 92.4 524 29.2
COL.COLO4_21376 Corchorus olitorius HOM05D003021 ORTHO05D002235 3.9e-16 90.5 585 29.9
MELO3C002008.2 Cucumis melo HOM05D003021 ORTHO05D002235 8.7e-16 89.4 546 29.5
Cfa019291 Carpinus fangiana HOM05D003021 ORTHO05D002235 1.5e-15 88.6 505 28.7
CiPaw.03G091400 Carya illinoinensis HOM05D003021 ORTHO05D002235 1.5e-15 88.6 546 28.6
CAN.G479.36 Capsicum annuum HOM05D003021 ORTHO05D002235 9.6e-15 85.9 232 39.7
FAN09G3860 Fragaria x ananassa HOM05D003021 ORTHO05D002235 1.3e-14 85.5 312 34.0
CiPaw.04G058300 Carya illinoinensis HOM05D003021 ORTHO05D002235 2.1e-14 84.7 604 28.8
Medtr6g013485 Medicago truncatula HOM05D003021 ORTHO05D002235 2.1e-14 84.7 333 35.4
Thhalv10013405m.g Eutrema salsugineum HOM05D009950 ORTHO05D002235 3.7e-14 84.0 529 28.2
FAN05G2768 Fragaria x ananassa HOM05D003021 ORTHO05D002235 3.7e-14 84.0 305 33.8
MBI16_g15533_MAGBIO Magnolia biondii HOM05D003021 ORTHO05D002235 8.1e-14 82.8 326 33.4
PSO017G1133 Papaver somniferum HOM05D003021 ORTHO05D002235 1.4e-13 82.0 518 27.0
THA.LOC104823896 Tarenaya hassleriana HOM05D003021 ORTHO05D002235 1.8e-13 81.6 517 30.2
Haze_07672 Corylus avellana HOM05D003021 ORTHO05D002235 3.1e-13 80.9 511 28.0
Aa31LG3G18640 Aethionema arabicum HOM05D009040 ORTHO05D002235 4.0e-13 80.5 491 28.9
Phvul.004G033600 Phaseolus vulgaris HOM05D003021 ORTHO05D002235 5.3e-13 80.1 335 32.8
CSS0009655 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 6.9e-13 79.7 448 30.4
Eucgr.B00563 Eucalyptus grandis HOM05D003021 ORTHO05D002235 6.9e-13 79.7 399 26.3
MD09G1061400 Malus domestica HOM05D003021 ORTHO05D002235 6.9e-13 79.7 610 25.7
Glyma.17G076200 Glycine max HOM05D014856 ORTHO05D002235 1.2e-12 79.0 574 26.7
Prupe.3G258800 Prunus persica HOM05D003021 ORTHO05D002235 1.2e-12 79.0 272 34.2
MSTRG.23902 Avicennia marina HOM05D003021 ORTHO05D002235 1.5e-12 78.6 329 38.0
PSO013G0053 Papaver somniferum HOM05D003021 ORTHO05D002235 2.6e-12 77.8 341 31.1
MD14G1207900 Malus domestica HOM05D003021 ORTHO05D002235 4.5e-12 77.0 80 55.0
Haze_14471 Corylus avellana HOM05D003021 ORTHO05D002235 5.8e-12 76.6 318 35.8
DCAR_011056 Daucus carota HOM05D003021 ORTHO05D002235 7.6e-12 76.3 527 27.7
QL02p039488 Quercus lobata HOM05D003021 ORTHO05D002235 7.6e-12 76.3 599 27.2
MSTRG.15459 Avicennia marina HOM05D003021 ORTHO05D002235 9.9e-12 75.9 127 38.6
CSS0042635 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 9.9e-12 75.9 252 40.1
Ca_21794_v3 Cicer arietinum L. HOM05D014856 ORTHO05D002235 1.3e-11 75.5 545 26.8
PGR083G2506 Punica granatum HOM05D003021 ORTHO05D002235 1.3e-11 75.5 140 46.4
Sp6g28670 Schrenkiella parvula HOM05D009950 ORTHO05D002235 1.7e-11 75.1 501 28.1
CsaV3_1G005770 Cucumis sativus L. HOM05D003021 ORTHO05D002235 2.2e-11 74.7 547 26.7
Nn3g17378 Nelumbo nucifera HOM05D003021 ORTHO05D002235 2.2e-11 74.7 182 44.5
PSO063G0327 Papaver somniferum HOM05D003021 ORTHO05D002235 2.2e-11 74.7 341 30.8
Ciclev10011360m.g Citrus clementina HOM05D003021 ORTHO05D002235 2.9e-11 74.3 597 28.8
AUR62042563 Chenopodium quinoa HOM05D003021 ORTHO05D002235 3.8e-11 73.9 68 60.3
Duzib187G0754 Durio zibethinus HOM05D003021 ORTHO05D002235 4.9e-11 73.6 584 27.6
ECA238G3698 Erigeron canadensis HOM05D003021 ORTHO05D002235 6.4e-11 73.2 456 26.1
AUR62018150 Chenopodium quinoa HOM05D003021 ORTHO05D002235 8.4e-11 72.8 79 53.2
Gohir.D04G045100 Gossypium hirsutum HOM05D003021 ORTHO05D002235 8.4e-11 72.8 57 68.4
PGR083G1105 Punica granatum HOM05D003021 ORTHO05D002235 1.1e-10 72.4 177 33.9
ECA232G0219 Erigeron canadensis HOM05D003021 ORTHO05D002235 1.9e-10 71.6 504 27.2
FAN13G0757 Fragaria x ananassa HOM05D003021 ORTHO05D002235 1.9e-10 71.6 70 57.1
Lj1g0014126 Lotus japonicus HOM05D003021 ORTHO05D002235 1.9e-10 71.6 55 69.1
SalBow1G6367 Salvia bowleyana HOM05D003021 ORTHO05D002235 2.4e-10 71.2 547 29.8
THA.LOC104801387 Tarenaya hassleriana HOM05D009040 ORTHO05D002235 2.4e-10 71.2 507 28.4
TPR.G26183 Trifolium pratense HOM05D003021 ORTHO05D002235 2.4e-10 71.2 337 29.1
BraA03t10035Z Brassica rapa HOM05D009950 ORTHO05D002235 3.2e-10 70.9 485 30.5
Potri.012G067100 Populus trichocarpa HOM05D003021 ORTHO05D002235 3.2e-10 70.9 483 28.0
BolC3t13309H Brassica oleracea HOM05D009950 ORTHO05D002235 4.2e-10 70.5 487 27.5
THA.LOC104805496 Tarenaya hassleriana HOM05D003021 ORTHO05D002235 4.2e-10 70.5 528 25.6
CARHR197890 Cardamine hirsuta HOM05D009950 ORTHO05D002235 5.5e-10 70.1 482 27.0
Cpa.g.sc14.145 Carica papaya HOM05D003021 ORTHO05D002235 5.5e-10 70.1 585 26.5
FAN08G3689 Fragaria x ananassa HOM05D003021 ORTHO05D002235 5.5e-10 70.1 66 57.6
Dinv38768 Davidia involucrata HOM05D003021 ORTHO05D002235 7.1e-10 69.7 598 27.4
FvH4_6g47500 Fragaria vesca HOM05D003021 ORTHO05D002235 7.1e-10 69.7 329 31.6
Potri.015G049600 Populus trichocarpa HOM05D003021 ORTHO05D002235 7.1e-10 69.7 490 25.7
CANSAT64G0795 Cannabis sativa HOM05D003021 ORTHO05D002235 9.3e-10 69.3 526 31.7
Thhalv10027728m.g Eutrema salsugineum HOM05D003021 ORTHO05D002235 9.3e-10 69.3 547 31.4
FvH4_5g14370 Fragaria vesca HOM05D003021 ORTHO05D002235 9.3e-10 69.3 72 54.2
Psat6g146680 Pisum sativum HOM05D003021 ORTHO05D002235 9.3e-10 69.3 341 32.6
FAN14G5480 Fragaria x ananassa HOM05D003021 ORTHO05D002235 1.2e-09 68.9 329 31.6
Oeu062145.1 Olea europaea HOM05D003021 ORTHO05D002235 1.2e-09 68.9 530 28.5
Peaxi162Scf00166g00071 Petunia axillaris HOM05D003021 ORTHO05D002235 1.2e-09 68.9 310 28.7
ClCG04G012000 Citrullus lanatus HOM05D003021 ORTHO05D002235 1.6e-09 68.6 543 26.9
Nitab4.5_0003145g0060 Nicotiana tabacum HOM05D003021 ORTHO05D002235 1.6e-09 68.6 60 61.7
BcaC06g32508 Brassica carinata HOM05D009040 ORTHO05D002235 2.1e-09 68.2 77 50.6
A02p41540 Brassica napus HOM05D009040 ORTHO05D002235 2.1e-09 68.2 125 37.6
CAN.G606.81 Capsicum annuum HOM05D003021 ORTHO05D002235 2.7e-09 67.8 60 56.7
Duzib147G0806 Durio zibethinus HOM05D003021 ORTHO05D002235 2.7e-09 67.8 578 28.2
BcaB01g05057 Brassica carinata HOM05D009950 ORTHO05D002235 3.5e-09 67.4 487 27.3
Os03g0211400 Oryza sativa ssp. japonica HOM05D003021 ORTHO05D002235 3.5e-09 67.4 177 42.4
A03p07130 Brassica napus HOM05D009950 ORTHO05D002235 4.6e-09 67.0 484 29.5
C09p69010 Brassica napus HOM05D009040 ORTHO05D002235 4.6e-09 67.0 80 51.2
BolC3t12928H Brassica oleracea HOM05D009040 ORTHO05D002235 4.6e-09 67.0 74 51.4
DCAR_026022 Daucus carota HOM05D003021 ORTHO05D002235 4.6e-09 67.0 519 26.2
arahy.Tifrunner.gnm1.ann1.JN5ZJX Arachis hypogaea HOM05D003021 ORTHO05D002235 6.0e-09 66.6 330 29.1
CAN.G1164.2 Capsicum annuum HOM05D003021 ORTHO05D002235 6.0e-09 66.6 128 35.9
Sp7g02590 Schrenkiella parvula HOM05D003021 ORTHO05D002235 6.0e-09 66.6 546 31.0
C03p08120 Brassica napus HOM05D009950 ORTHO05D002235 7.9e-09 66.2 487 28.3
HanXRQChr15g0488721 Helianthus annuus HOM05D003021 ORTHO05D002235 7.9e-09 66.2 56 64.3
Prupe.5G200000 Prunus persica HOM05D003021 ORTHO05D002235 7.9e-09 66.2 52 65.4
RcHm_v2.0_Chr2g0166531 Rosa chinensis HOM05D003021 ORTHO05D002235 7.9e-09 66.2 312 31.4
BcaB01g05649 Brassica carinata HOM05D009040 ORTHO05D002235 1.0e-08 65.9 74 51.4
C03p03900 Brassica napus HOM05D009040 ORTHO05D002235 1.0e-08 65.9 74 51.4
MD06G1199300 Malus domestica HOM05D003021 ORTHO05D002235 1.0e-08 65.9 80 48.8
AT5G61260 Arabidopsis thaliana HOM05D009040 ORTHO05D002235 1.3e-08 65.5 491 26.1
CSS0039196 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 1.8e-08 65.1 508 28.0
Glyma.05G023500 Glycine max HOM05D014856 ORTHO05D002235 1.8e-08 65.1 555 25.6
Nitab4.5_0000212g0140 Nicotiana tabacum HOM05D003021 ORTHO05D002235 1.8e-08 65.1 84 51.2
AL8G37920 Arabidopsis lyrata HOM05D009040 ORTHO05D002235 2.3e-08 64.7 496 26.8
CAN.G1627.2 Capsicum annuum HOM05D003021 ORTHO05D002235 2.3e-08 64.7 125 36.8
Lj9P468T32 Lonicera japonica HOM05D003021 ORTHO05D002235 2.3e-08 64.7 307 29.3
Oeu000855.1 Olea europaea HOM05D003021 ORTHO05D002235 2.3e-08 64.7 531 28.8
Thecc.04G090900 Theobroma cacao HOM05D003021 ORTHO05D002235 2.3e-08 64.7 609 27.9
Atru.chr9.291 Acer truncatum HOM05D003021 ORTHO05D002235 3.0e-08 64.3 120 36.7
Aqoxy3G03562 Aquilegia oxysepala HOM05D003021 ORTHO05D002235 3.0e-08 64.3 636 24.8
CSS0009627 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 3.0e-08 64.3 312 35.6
CAN.G411.99 Capsicum annuum HOM05D003021 ORTHO05D002235 3.9e-08 63.9 81 49.4
Medtr7g012290 Medicago truncatula HOM05D003021 ORTHO05D002235 3.9e-08 63.9 77 48.1
Rhsim08G0073600 Rhododendron simsii HOM05D003021 ORTHO05D002235 5.1e-08 63.5 524 25.8
HanXRQChr14g0448711 Helianthus annuus HOM05D003021 ORTHO05D002235 6.7e-08 63.2 124 47.6
RcHm_v2.0_Chr7g0182331 Rosa chinensis HOM05D003021 ORTHO05D002235 6.7e-08 63.2 51 64.7
C02p61480 Brassica napus HOM05D009040 ORTHO05D002235 8.7e-08 62.8 168 33.9
AT5G39380 Arabidopsis thaliana HOM05D003021 ORTHO05D002235 1.1e-07 62.4 519 29.5
Lj7C750T8 Lonicera japonica HOM05D031498 ORTHO05D009846 1.1e-07 62.4 63 52.4
TPR.G33474 Trifolium pratense HOM05D003021 ORTHO05D002235 1.1e-07 62.4 58 60.3
Ah.02g113870 Amaranthus hybridus HOM05D003021 ORTHO05D002235 1.5e-07 62.0 144 36.1
Glyma.18G264100 Glycine max HOM05D003021 ORTHO05D002235 1.5e-07 62.0 59 52.5
Sabra17G0079400 Salix brachista HOM05D003021 ORTHO05D002235 1.5e-07 62.0 422 31.8
BolC2t12199H Brassica oleracea HOM05D009040 ORTHO05D002235 1.9e-07 61.6 168 33.9
Lalb_Chr06g0175101 Lupinus albus HOM05D003021 ORTHO05D002235 1.9e-07 61.6 347 35.4
Sabra12G0048000 Salix brachista HOM05D003021 ORTHO05D002235 1.9e-07 61.6 476 27.1
CAN.G1627.8 Capsicum annuum HOM05D003021 ORTHO05D002065 2.5e-07 61.2 308 28.6
CDE05G3476 Ceratophyllum demersum HOM05D003021 ORTHO05D002235 2.5e-07 61.2 67 55.2
A02p03020 Brassica napus HOM05D009950 ORTHO05D002235 3.3e-07 60.8 119 44.5
Carub.0006s1359 Capsella rubella HOM05D009950 ORTHO05D002235 3.3e-07 60.8 488 25.8
PGSC0003DMG400029280 Solanum tuberosum HOM05D009522 ORTHO05D009846 3.3e-07 60.8 79 43.0
AL7G50940 Arabidopsis lyrata HOM05D003021 ORTHO05D002235 4.3e-07 60.5 520 29.4
arahy.Tifrunner.gnm1.ann1.Y4RXEQ Arachis hypogaea HOM05D003021 ORTHO05D002235 4.3e-07 60.5 175 29.1
CAN.G411.105 Capsicum annuum HOM05D003021 ORTHO05D002235 4.3e-07 60.5 53 58.5
DCAR_025407 Daucus carota HOM05D003021 ORTHO05D002235 4.3e-07 60.5 63 50.8
Lsat_1_v5_gn_4_170321 Lactuca sativa HOM05D003021 ORTHO05D002235 4.3e-07 60.5 492 29.7
SGA_v2.0_scaffold52G19187 Striga asiatica HOM05D003021 ORTHO05D002235 4.3e-07 60.5 489 26.0
BcaC04g24234 Brassica carinata HOM05D009950 ORTHO05D002235 5.6e-07 60.1 67 50.7
CDE05G2252 Ceratophyllum demersum HOM05D003021 ORTHO05D002235 5.6e-07 60.1 66 50.0
Cc00_g05330 Coffea canephora HOM05D009522 ORTHO05D009846 5.6e-07 60.1 68 48.5
arahy.Tifrunner.gnm1.ann1.MP0IU4 Arachis hypogaea HOM05D003021 ORTHO05D002235 7.4e-07 59.7 175 28.6
BcaC03g13413 Brassica carinata HOM05D009950 ORTHO05D002235 7.4e-07 59.7 68 52.9
C02p07700 Brassica napus HOM05D009950 ORTHO05D002235 7.4e-07 59.7 68 52.9
BolC2t06701H Brassica oleracea HOM05D009950 ORTHO05D002235 7.4e-07 59.7 68 52.9
THA.LOC104814972 Tarenaya hassleriana HOM05D008799 ORTHO05D010975 7.4e-07 59.7 48 58.3
BcaC06g33168 Brassica carinata HOM05D009040 ORTHO05D002235 9.6e-07 59.3 56 58.9
CSS0009260 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 9.6e-07 59.3 609 24.5
Oeu000639.1 Olea europaea HOM05D003021 ORTHO05D002235 9.6e-07 59.3 322 34.5
Sed0005734 Sechium edule HOM05D003021 ORTHO05D002235 9.6e-07 59.3 89 39.3
TWI60G1604 Tripterygium wilfordii HOM05D003021 ORTHO05D002235 9.6e-07 59.3 301 36.2
unitig_744.g24000 Utricularia gibba HOM05D003021 ORTHO05D002235 9.6e-07 59.3 523 27.0
Solyc12g096400.2 Solanum lycopersicum HOM05D009522 ORTHO05D009846 1.3e-06 58.9 78 42.3
SGA_v2.0_scaffold154G37085 Striga asiatica HOM05D003021 ORTHO05D002235 1.3e-06 58.9 72 48.6
ATR0564G160 Amborella trichopoda HOM05D003021 ORTHO05D002235 1.6e-06 58.5 136 35.3
EL10Ac2g03069 Beta vulgaris HOM05D003021 ORTHO05D002235 1.6e-06 58.5 332 31.9
CAN.G1130.4 Capsicum annuum HOM05D003021 ORTHO05D002235 1.6e-06 58.5 52 61.5
Glyma.13G058900 Glycine max HOM05D003021 ORTHO05D002235 1.6e-06 58.5 365 34.5
Nitab4.5_0008213g0010 Nicotiana tabacum HOM05D003021 ORTHO05D002235 2.1e-06 58.2 341 28.2
Nitab4.5_0002023g0020 Nicotiana tabacum HOM05D009522 ORTHO05D009846 3.7e-06 57.4 60 50.0
Rhsim07G0169800 Rhododendron simsii HOM05D033576 ORTHO05D009846 3.7e-06 57.4 44 63.6
Atru.chr7.2642 Acer truncatum HOM05D019337 ORTHO05D009846 4.8e-06 57.0 77 40.3
CANSAT80G0381 Cannabis sativa HOM05D003021 ORTHO05D002235 4.8e-06 57.0 587 24.0
Manes.01G099000 Manihot esculenta HOM05D003021 ORTHO05D002235 4.8e-06 57.0 70 42.9
Sopen12g032250 Solanum pennellii HOM05D009522 ORTHO05D009846 4.8e-06 57.0 50 60.0
Duzib205G0780 Durio zibethinus HOM05D017748 ORTHO05D020503 6.2e-06 56.6 118 38.1
Gohir.A03G068600 Gossypium hirsutum HOM05D017748 ORTHO05D020503 6.2e-06 56.6 64 50.0
Oeu018569.1 Olea europaea HOM05D009522 ORTHO05D009846 6.2e-06 56.6 47 66.0
PGR031G3799 Punica granatum HOM05D009522 ORTHO05D009846 6.2e-06 56.6 53 56.6
SGA_v2.0_scaffold121G33085 Striga asiatica HOM05D003021 ORTHO05D002235 6.2e-06 56.6 125 32.8
Dinv21138 Davidia involucrata HOM05D003021 ORTHO05D009846 8.2e-06 56.2 48 56.2
Manes.14G083100 Manihot esculenta HOM05D003021 ORTHO05D002235 8.2e-06 56.2 473 22.8
Peaxi162Scf00288g00084 Petunia axillaris HOM05D009522 ORTHO05D009846 8.2e-06 56.2 58 50.0
PGSC0003DMG400001352 Solanum tuberosum HOM05D003021 ORTHO05D002235 8.2e-06 56.2 331 28.1


User provided reference genes

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