Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 7.9e-219 763.5 380 100.0
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.1e-164 583.6 378 80.7
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 5.2e-162 574.7 378 78.3
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 5.2e-162 574.7 378 78.8
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 7.5e-161 570.9 378 78.0
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 1.6e-155 553.1 378 75.9
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 3.6e-155 552.0 380 74.5
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 2.5e-132 476.1 372 65.9
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 1.1e-130 470.7 378 64.0
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 1.2e-129 467.2 373 64.3
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 1.5e-129 466.8 371 63.1
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 1.5e-129 466.8 375 63.2
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 2.6e-129 466.1 379 63.3
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 7.6e-129 464.5 379 63.1
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 1.0e-125 454.1 370 63.5
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 2.3e-125 453.0 380 61.3
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 3.0e-125 452.6 375 60.5
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 1.5e-124 450.3 371 62.0
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 1.8e-122 443.4 374 61.5
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 2.4e-122 443.0 372 63.2
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 4.0e-122 442.2 379 61.2
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 1.2e-121 440.7 377 60.5
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 2.0e-121 439.9 370 61.1
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 3.4e-121 439.1 373 59.2
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 5.8e-121 438.3 371 59.8
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 1.7e-120 436.8 372 60.2
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.7e-120 436.8 373 61.9
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.2e-120 436.4 370 60.8
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 2.2e-120 436.4 381 58.8
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 2.2e-120 436.4 373 61.1
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.9e-120 436.0 370 60.5
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 2.9e-120 436.0 373 61.9
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 6.5e-120 434.9 370 60.5
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 8.4e-120 434.5 373 62.5
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 1.1e-119 434.1 370 60.8
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.1e-119 434.1 370 60.5
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 1.1e-119 434.1 381 59.1
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 7.1e-119 431.4 377 60.5
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 7.1e-119 431.4 372 60.5
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 7.1e-119 431.4 374 59.9
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 9.3e-119 431.0 372 58.1
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 9.3e-119 431.0 377 59.9
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 9.3e-119 431.0 370 60.8
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 1.2e-118 430.6 374 59.1
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 6.0e-118 428.3 370 60.3
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.3e-117 427.2 374 59.9
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 1.3e-117 427.2 375 58.1
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 2.3e-117 426.4 372 59.9
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 3.9e-117 425.6 370 59.7
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 5.1e-117 425.2 369 57.7
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 5.1e-117 425.2 376 59.6
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 5.1e-117 425.2 376 59.8
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 5.1e-117 425.2 373 59.5
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 5.1e-117 425.2 368 60.3
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 6.7e-117 424.9 374 59.6
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 8.7e-117 424.5 371 59.8
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 1.1e-116 424.1 374 59.6
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 3.3e-116 422.5 376 59.8
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 5.7e-116 421.8 373 59.0
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 9.7e-116 421.0 370 59.2
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 2.8e-115 419.5 368 59.0
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 1.4e-114 417.2 366 59.3
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 3.1e-114 416.0 362 60.2
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 9.0e-114 414.5 378 57.9
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 1.2e-113 414.1 376 60.1
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 1.5e-113 413.7 368 57.6
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 1.5e-113 413.7 373 57.1
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 5.9e-113 411.8 371 57.1
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 1.3e-112 410.6 370 58.1
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 2.2e-112 409.8 375 58.4
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 5.0e-112 408.7 374 55.6
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 6.5e-112 408.3 368 56.5
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 2.5e-111 406.4 374 55.6
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 5.5e-111 405.2 345 60.9
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 7.2e-111 404.8 372 55.4
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 2.7e-110 402.9 372 57.0
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 1.0e-109 401.0 371 55.5
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 1.4e-109 400.6 374 55.3
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 5.1e-109 398.7 380 56.3
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 6.7e-109 398.3 380 56.3
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 8.8e-109 397.9 372 55.4
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 1.5e-108 397.1 380 56.1
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 4.3e-108 395.6 380 55.5
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 5.7e-108 395.2 376 57.4
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 1.7e-107 393.7 398 52.8
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 1.1e-106 391.0 381 55.1
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 1.8e-106 390.2 374 53.5
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 5.3e-106 388.7 372 54.6
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 2.0e-105 386.7 392 53.8
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 2.0e-105 386.7 369 55.0
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 2.6e-105 386.3 332 60.2
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 5.0e-104 382.1 372 53.5
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 1.4e-103 380.6 367 54.0
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 6.7e-101 371.7 352 55.1
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 2.0e-100 370.2 334 56.9
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 7.4e-100 368.2 372 52.4
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 2.2e-99 366.7 315 60.0
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 1.0e-96 357.8 325 57.5
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 2.3e-93 346.7 299 59.5
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 4.5e-89 332.4 296 59.8
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 5.0e-88 328.9 373 45.8
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 6.1e-86 322.0 293 58.0
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 4.0e-85 319.3 288 58.7
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 2.0e-84 317.0 257 63.8
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 5.7e-84 315.5 365 47.4
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 3.7e-83 312.8 288 56.2
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 4.7e-78 295.8 300 51.3
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 2.6e-76 290.0 293 54.3
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 6.3e-75 285.4 293 51.5
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 3.5e-73 279.6 327 45.9
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 3.0e-69 266.5 366 42.9
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-68 264.6 296 51.7
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 2.7e-65 253.4 293 49.8
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 1.3e-64 251.1 245 53.5
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 6.0e-57 225.7 246 50.8
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 3.0e-56 223.4 182 61.0
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 4.1e-50 203.0 131 74.8
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 1.1e-45 188.3 171 63.2
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 7.5e-44 182.2 369 35.0
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 8.9e-37 158.7 377 32.6
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 4.9e-35 152.9 125 56.0
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 7.1e-34 149.1 112 63.4
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 7.1e-34 149.1 112 63.4
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 7.1e-34 149.1 112 63.4
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 3.5e-33 146.7 129 56.6
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 4.6e-33 146.4 105 67.6
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 5.1e-32 142.9 108 64.8
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 3.1e-29 133.7 84 72.6
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 6.9e-29 132.5 375 30.7
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 4.4e-28 129.8 90 67.8
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 7.1e-26 122.5 80 76.2
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 1.8e-21 107.8 75 73.3
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 7.6e-20 102.4 76 61.8
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 5.1e-16 89.7 54 75.9
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 1.1e-15 88.6 85 55.3
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 5.3e-13 79.7 61 63.9
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 5.3e-13 79.7 61 63.9
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 9.0e-13 79.0 57 61.4
arahy.Tifrunner.gnm1.ann1.SQV5XE Arachis hypogaea HOM05D005332 ORTHO05D004201 9.6e-07 58.9 41 68.3
arahy.Tifrunner.gnm1.ann1.G2MMRU Arachis hypogaea HOM05D005332 ORTHO05D006861 4.8e-06 56.6 40 72.5


User provided reference genes

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