Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006619g0020 Nicotiana tabacum HOM05D001944 ORTHO05D002405 0.0e+00 1164.1 608 100.0
Nitab4.5_0000181g0180 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.2e-311 1072.4 608 93.1
Peaxi162Scf00167g00092 Petunia axillaris HOM05D001944 ORTHO05D002405 4.4e-203 711.8 621 65.1
CAN.G171.6 Capsicum annuum HOM05D001944 ORTHO05D002405 5.7e-203 711.4 600 67.0
Sopen06g005090 Solanum pennellii HOM05D001944 ORTHO05D002405 2.3e-191 672.9 602 65.4
Solyc06g010240.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 7.3e-190 667.9 602 65.1
Nitab4.5_0006532g0030 Nicotiana tabacum HOM05D001944 ORTHO05D002405 2.2e-130 470.3 614 49.7
Peaxi162Scf00948g00114 Petunia axillaris HOM05D001944 ORTHO05D002405 1.3e-127 461.1 585 51.3
Nitab4.5_0000602g0020 Nicotiana tabacum HOM05D001944 ORTHO05D002405 4.1e-124 449.5 601 48.4
Sopen11g028320 Solanum pennellii HOM05D001944 ORTHO05D002405 8.2e-93 345.5 597 43.0
Solyc11g069610.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 2.9e-90 337.0 597 42.4
CAN.G631.45 Capsicum annuum HOM05D000550 ORTHO05D009781 4.2e-89 333.2 599 41.2
Dinv01067 Davidia involucrata HOM05D001944 ORTHO05D002405 3.9e-66 256.9 503 40.6
CSS0012038 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 7.0e-60 236.1 593 33.6
Oeu013469.1 Olea europaea HOM05D001944 ORTHO05D002405 2.1e-59 234.6 563 35.5
Cc01_g10870 Coffea canephora HOM05D001944 ORTHO05D002405 2.3e-58 231.1 487 36.3
GSVIVG01025215001 Vitis vinifera HOM05D001944 ORTHO05D002405 2.0e-54 218.0 460 38.0
Actinidia07154 Actinidia chinensis HOM05D001944 ORTHO05D002405 1.7e-53 214.9 571 33.3
Lj2C1021G5 Lonicera japonica HOM05D001944 ORTHO05D002405 1.6e-51 208.4 448 38.2
Manes.03G122401 Manihot esculenta HOM05D001944 ORTHO05D002405 4.6e-51 206.8 530 35.1
Hma1.2p1_0307F.1_g119910 Hydrangea macrophylla HOM05D001944 ORTHO05D002405 7.8e-51 206.1 489 35.6
Oeu056302.1 Olea europaea HOM05D001944 ORTHO05D002405 7.8e-51 206.1 477 34.8
Actinidia03719 Actinidia chinensis HOM05D001944 ORTHO05D002405 4.3e-49 200.3 437 37.8
Duzib168G0647 Durio zibethinus HOM05D001944 ORTHO05D002405 1.2e-48 198.7 496 35.7
vmacro03215 Vaccinium macrocarpon HOM05D001944 ORTHO05D002405 2.1e-48 198.0 592 32.6
MSTRG.17786 Avicennia marina HOM05D001944 ORTHO05D002405 4.7e-48 196.8 560 34.5
Prupe.6G104600 Prunus persica HOM05D001944 ORTHO05D002405 3.1e-47 194.1 424 38.2
Thecc.09G343900 Theobroma cacao HOM05D001944 ORTHO05D002405 2.6e-46 191.0 493 34.1
Actinidia20444 Actinidia chinensis HOM05D001944 ORTHO05D002405 1.4e-44 185.3 414 37.4
QL01p026770 Quercus lobata HOM05D001944 ORTHO05D002405 1.4e-44 185.3 504 34.3
TAR636G3431 Trochodendron aralioides HOM05D001944 ORTHO05D002405 2.4e-44 184.5 407 38.3
FAN11G3960 Fragaria x ananassa HOM05D001944 ORTHO05D002405 7.3e-41 172.9 418 36.6
TWI31G0996 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 9.6e-41 172.6 422 35.1
FvH4_3g31740 Fragaria vesca HOM05D001944 ORTHO05D002405 1.2e-40 172.2 420 35.5
MD11G1139900 Malus domestica HOM05D001944 ORTHO05D002405 4.0e-39 167.2 527 33.4
Sc21g0003900 Simmondsia chinensis HOM05D001944 ORTHO05D002405 4.0e-39 167.2 594 30.3
Cfa011296 Carpinus fangiana HOM05D001944 ORTHO05D002405 5.3e-39 166.8 425 36.0
FAN16G2569 Fragaria x ananassa HOM05D001944 ORTHO05D002405 9.0e-39 166.0 419 35.3
FAN21G2742 Fragaria x ananassa HOM05D001944 ORTHO05D002405 9.0e-39 166.0 599 29.9
Dinv32719 Davidia involucrata HOM05D001944 ORTHO05D002405 2.0e-38 164.9 378 36.2
RcHm_v2.0_Chr5g0058411 Rosa chinensis HOM05D001944 ORTHO05D002405 2.0e-38 164.9 421 36.8
CSS0007832 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 9.9e-38 162.5 423 34.8
Rhsim13G0096400 Rhododendron simsii HOM05D001944 ORTHO05D002405 1.7e-37 161.8 514 31.7
Gorai.004G230500 Gossypium raimondii HOM05D001944 ORTHO05D002405 2.9e-37 161.0 497 32.2
MSTRG.18675 Avicennia marina HOM05D001944 ORTHO05D002405 8.4e-37 159.5 495 31.7
MSTRG.12332 Avicennia marina HOM05D001944 ORTHO05D002405 4.2e-36 157.1 455 31.4
Potri.013G006000 Populus trichocarpa HOM05D001944 ORTHO05D002405 4.2e-36 157.1 401 34.2
Sabra05G0007500 Salix brachista HOM05D001944 ORTHO05D002405 5.4e-36 156.8 408 35.3
MD03G1121600 Malus domestica HOM05D001944 ORTHO05D002405 7.1e-36 156.4 500 32.8
Rhsim01G0215200 Rhododendron simsii HOM05D001944 ORTHO05D014293 3.5e-35 154.1 521 32.8
Potri.005G010133 Populus trichocarpa HOM05D001944 ORTHO05D002405 4.6e-35 153.7 345 37.4
Lj3g0013525 Lotus japonicus HOM05D001944 ORTHO05D002405 1.3e-34 152.1 399 35.8
TAR369G0775 Trochodendron aralioides HOM05D001944 ORTHO05D002405 1.3e-34 152.1 474 31.9
CiPaw.14G085200 Carya illinoinensis HOM05D001944 ORTHO05D002405 6.6e-34 149.8 474 33.5
Gohir.A08G199401 Gossypium hirsutum HOM05D001944 ORTHO05D002405 6.6e-34 149.8 370 33.0
Potri.004G212700 Populus trichocarpa HOM05D001944 ORTHO05D002405 6.6e-34 149.8 564 29.3
MD11G1140000 Malus domestica HOM05D001944 ORTHO05D002405 3.6e-32 144.1 419 34.6
TWI79G1706 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 6.2e-32 143.3 417 32.1
Haze_23780 Corylus avellana HOM05D001944 ORTHO05D002405 1.4e-31 142.1 373 34.6
Ca_01379_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 3.1e-31 141.0 491 32.2
Ca_01395_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 3.1e-31 141.0 491 32.2
vmacro14422 Vaccinium macrocarpon HOM05D001944 ORTHO05D002405 3.1e-31 141.0 612 29.7
Prupe.6G104700 Prunus persica HOM05D001944 ORTHO05D002405 6.9e-31 139.8 588 29.6
Cpa.g.sc311.2 Carica papaya HOM05D001944 ORTHO05D002405 2.0e-30 138.3 524 31.7
Migut.N02586 Erythranthe guttata HOM05D001944 ORTHO05D002405 9.9e-30 136.0 485 31.8
COL.COLO4_18305 Corchorus olitorius HOM05D001944 ORTHO05D002405 1.7e-29 135.2 528 30.1
TAR633G2605 Trochodendron aralioides HOM05D001944 ORTHO05D002405 3.8e-29 134.0 272 36.0
PGR102G2473 Punica granatum HOM05D001944 ORTHO05D002405 1.1e-28 132.5 297 36.0
Glyma.12G077400 Glycine max HOM05D001944 ORTHO05D011318 1.9e-28 131.7 523 28.3
Ciclev10027663m.g Citrus clementina HOM05D001944 ORTHO05D002405 1.6e-27 128.6 406 32.0
Glyma.11G196900 Glycine max HOM05D001944 ORTHO05D011318 1.6e-27 128.6 599 27.7
Aqoxy1G01204 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 3.9e-26 124.0 399 31.1
Hund01491 Selenicereus undatus HOM05D001944 ORTHO05D002405 5.1e-26 123.6 419 31.7
Medtr2g095030 Medicago truncatula HOM05D001944 ORTHO05D002405 8.7e-26 122.9 405 32.1
Lj1A201T36 Lonicera japonica HOM05D001944 ORTHO05D002405 1.9e-25 121.7 208 38.0
MELO3C004905.2 Cucumis melo HOM05D001944 ORTHO05D002405 3.3e-25 120.9 407 31.9
EL10Ac9g22555 Beta vulgaris HOM05D001944 ORTHO05D002405 2.1e-24 118.2 501 29.1
DCAR_022760 Daucus carota HOM05D001944 ORTHO05D002405 2.8e-24 117.9 560 28.9
Gohir.D05G104800 Gossypium hirsutum HOM05D001944 ORTHO05D002405 3.7e-24 117.5 187 39.6
CsaV3_1G013920 Cucumis sativus L. HOM05D001944 ORTHO05D002405 6.2e-24 116.7 407 31.9
Gorai.009G108800 Gossypium raimondii HOM05D001944 ORTHO05D002405 1.1e-23 115.9 187 39.0
ClCG03G002980 Citrullus lanatus HOM05D001944 ORTHO05D002405 3.1e-23 114.4 418 31.8
TPR.G11481 Trifolium pratense HOM05D001944 ORTHO05D002405 3.1e-23 114.4 472 29.7
AUR62022774 Chenopodium quinoa HOM05D001944 ORTHO05D002405 1.5e-22 112.1 456 29.6
Lalb_Chr19g0137131 Lupinus albus HOM05D001944 ORTHO05D011318 3.4e-22 110.9 472 28.6
Lsat_1_v5_gn_1_63980 Lactuca sativa HOM05D001944 ORTHO05D002405 5.8e-22 110.2 293 29.7
ECA248G2414 Erigeron canadensis HOM05D001944 ORTHO05D002405 9.9e-22 109.4 278 33.1
Phvul.005G133500 Phaseolus vulgaris HOM05D001944 ORTHO05D002405 1.3e-21 109.0 248 35.5
AUR62029227 Chenopodium quinoa HOM05D001944 ORTHO05D002405 1.7e-21 108.6 459 29.0
Lalb_Chr24g0394751 Lupinus albus HOM05D001944 ORTHO05D002405 2.2e-21 108.2 416 28.6
arahy.Tifrunner.gnm1.ann1.02PMC1 Arachis hypogaea HOM05D001944 ORTHO05D002405 3.8e-21 107.5 420 30.7
arahy.Tifrunner.gnm1.ann1.D4VV12 Arachis hypogaea HOM05D001944 ORTHO05D002405 1.4e-20 105.5 600 27.5
Gohir.A05G105000 Gossypium hirsutum HOM05D001944 ORTHO05D002405 1.4e-20 105.5 149 39.6
Dinv37298 Davidia involucrata HOM05D001944 ORTHO05D002405 1.9e-20 105.1 139 45.3
Glyma.12G175400 Glycine max HOM05D001944 ORTHO05D002405 3.2e-20 104.4 266 33.5
Sed0024562 Sechium edule HOM05D001944 ORTHO05D002405 7.1e-20 103.2 403 30.0
ECA248G3660 Erigeron canadensis HOM05D001944 ORTHO05D002405 9.3e-20 102.8 131 41.2
Phvul.011G081700 Phaseolus vulgaris HOM05D001944 ORTHO05D011318 1.2e-19 102.4 529 28.9
VMungo1080G1631 Vigna mungo HOM05D001944 ORTHO05D002405 1.2e-19 102.4 341 32.6
HanXRQChr01g0019301 Helianthus annuus HOM05D001944 ORTHO05D002405 1.6e-19 102.1 277 31.8
Lalb_Chr01g0004401 Lupinus albus HOM05D001944 ORTHO05D011318 1.6e-19 102.1 500 29.6
AUR62029226 Chenopodium quinoa HOM05D001944 ORTHO05D002405 2.7e-19 101.3 430 30.0
Psat5g279720 Pisum sativum HOM05D001944 ORTHO05D002405 1.8e-18 98.6 588 27.6
Nn2g11517 Nelumbo nucifera HOM05D001944 ORTHO05D002405 3.9e-18 97.4 438 28.3
arahy.Tifrunner.gnm1.ann1.H0XM2A Arachis hypogaea HOM05D001944 ORTHO05D011318 5.1e-18 97.1 483 27.1
arahy.Tifrunner.gnm1.ann1.ST0ZZW Arachis hypogaea HOM05D001944 ORTHO05D011318 5.1e-18 97.1 483 28.2
Actinidia24117 Actinidia chinensis HOM05D001944 ORTHO05D002405 1.5e-17 95.5 253 31.6
Nn2g13727 Nelumbo nucifera HOM05D001944 ORTHO05D002405 7.4e-17 93.2 654 25.7
Sed0004333 Sechium edule HOM05D001944 ORTHO05D002405 9.6e-17 92.8 294 34.4
Ah.01g003060 Amaranthus hybridus HOM05D001944 ORTHO05D002405 1.3e-16 92.4 328 30.8
HanXRQChr01g0019291 Helianthus annuus HOM05D001944 ORTHO05D002405 1.3e-16 92.4 103 45.6
VMungo1127G1376 Vigna mungo HOM05D001944 ORTHO05D011318 2.1e-16 91.7 597 27.8
Lj3g0022042 Lotus japonicus HOM05D001944 ORTHO05D011318 2.8e-16 91.3 678 24.8
Glyma.13G324500 Glycine max HOM05D001944 ORTHO05D002405 2.4e-15 88.2 249 32.1
Migut.D02244 Erythranthe guttata HOM05D001944 ORTHO05D002405 6.9e-15 86.7 133 42.1
HanXRQChr01g0019281 Helianthus annuus HOM05D001944 ORTHO05D002405 1.5e-14 85.5 83 54.2
CSS0009803 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D017225 2.0e-14 85.1 212 33.0
CSS0041121 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D017225 3.4e-14 84.3 212 32.5
Ca_19290_v3 Cicer arietinum L. HOM05D001944 ORTHO05D011318 4.5e-14 84.0 493 27.2
FAN12G2222 Fragaria x ananassa HOM05D001944 ORTHO05D020674 4.5e-14 84.0 445 28.5
ATR0048G049 Amborella trichopoda HOM05D001944 ORTHO05D002405 1.0e-13 82.8 197 34.0
DCAR_006069 Daucus carota HOM05D001944 ORTHO05D002405 1.0e-13 82.8 203 35.5
FAN17G2018 Fragaria x ananassa HOM05D001944 ORTHO05D020674 1.0e-13 82.8 439 27.6
HanXRQChr01g0019271 Helianthus annuus HOM05D001944 ORTHO05D002405 1.0e-13 82.8 277 30.3
Lsat_1_v5_gn_2_98901 Lactuca sativa HOM05D001944 ORTHO05D002405 6.5e-13 80.1 97 41.2
Peaxi162Scf00123g00910 Petunia axillaris HOM05D001944 ORTHO05D002405 8.4e-13 79.7 281 33.1
SalBow3G3117 Salvia bowleyana HOM05D001944 ORTHO05D002405 1.1e-12 79.3 291 33.0
CANSAT54G1673 Cannabis sativa HOM05D001944 ORTHO05D002405 4.2e-12 77.4 145 37.9
PSO339G1466 Papaver somniferum HOM05D001944 ORTHO05D002405 4.2e-12 77.4 407 28.3
FvH4_4g08540 Fragaria vesca HOM05D001944 ORTHO05D020674 5.5e-12 77.0 454 28.9
HanXRQChr14g0452741 Helianthus annuus HOM05D001944 ORTHO05D002405 5.5e-12 77.0 239 31.8
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 7.1e-12 76.6 97 41.2
Medtr4g058650 Medicago truncatula HOM05D001944 ORTHO05D011318 9.3e-12 76.3 283 28.6
ECA238G1293 Erigeron canadensis HOM05D001944 ORTHO05D002405 1.2e-11 75.9 193 32.1
Sopen10g005720 Solanum pennellii HOM05D001944 ORTHO05D002405 1.6e-11 75.5 404 27.5
RcHm_v2.0_Chr4g0405411 Rosa chinensis HOM05D001944 ORTHO05D020674 3.5e-11 74.3 87 49.4
SGA_v2.0_scaffold116G32253 Striga asiatica HOM05D001944 ORTHO05D002405 3.5e-11 74.3 269 29.0
Cc06_g04010 Coffea canephora HOM05D001944 ORTHO05D002405 6.1e-11 73.6 282 29.4
PSO063G0478 Papaver somniferum HOM05D001944 ORTHO05D002405 7.9e-11 73.2 417 29.0
Nitab4.5_0000101g0280 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.3e-10 72.4 276 29.0
Thecc.05G062600 Theobroma cacao HOM05D001944 ORTHO05D002405 1.3e-10 72.4 239 32.2
Aqoxy7G00183 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 1.8e-10 72.0 125 40.8
Nitab4.5_0005320g0010 Nicotiana tabacum HOM05D001944 ORTHO05D002405 3.0e-10 71.2 270 28.9
QL93p2013_0009 Quercus lobata HOM05D001944 ORTHO05D002405 3.0e-10 71.2 158 36.7
QL07p044103 Quercus lobata HOM05D001944 ORTHO05D002405 3.9e-10 70.9 158 36.7
Oeu002984.1 Olea europaea HOM05D001944 ORTHO05D002405 8.7e-10 69.7 160 33.8
Rhsim05G0179600 Rhododendron simsii HOM05D001944 ORTHO05D002405 9.7e-09 66.2 125 40.0
SHI21823 Sapria himalayana HOM05D001944 ORTHO05D002405 1.3e-08 65.9 77 45.5
vmacro20024 Vaccinium macrocarpon HOM05D001944 ORTHO05D017225 1.3e-08 65.9 132 36.4
Ciclev10029237m.g Citrus clementina HOM05D001944 ORTHO05D002405 1.6e-08 65.5 229 31.4
SalBow3G2448 Salvia bowleyana HOM05D001944 ORTHO05D002405 2.8e-08 64.7 181 30.4
THA.LOC104800593 Tarenaya hassleriana HOM05D001944 ORTHO05D002405 2.8e-08 64.7 358 27.7
Solyc10g011940.1 Solanum lycopersicum HOM05D001944 ORTHO05D002405 3.7e-08 64.3 380 26.6
Psat7g192240 Pisum sativum HOM05D001944 ORTHO05D011318 8.2e-08 63.2 368 27.2
EL10Ac7g16595 Beta vulgaris HOM05D001944 ORTHO05D002405 1.1e-07 62.8 105 40.0
PGSC0003DMG400019409 Solanum tuberosum HOM05D001944 ORTHO05D002405 1.1e-07 62.8 389 26.7
THA.LOC104826377 Tarenaya hassleriana HOM05D001944 ORTHO05D002405 4.1e-07 60.8 310 27.7
Migut.J00530 Erythranthe guttata HOM05D001944 ORTHO05D017225 9.0e-07 59.7 288 27.8
Lsat_1_v5_gn_1_53241 Lactuca sativa HOM05D001944 ORTHO05D002405 1.5e-06 58.9 157 30.6
TWI74G0797 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 2.6e-06 58.2 151 32.5
SGA_v2.0_scaffold40G15535 Striga asiatica HOM05D001944 ORTHO05D017225 4.5e-06 57.4 258 29.1
Duzib128G0909 Durio zibethinus HOM05D001944 ORTHO05D002405 5.9e-06 57.0 153 33.3
PSO017G6475 Papaver somniferum HOM05D001944 ORTHO05D002405 5.9e-06 57.0 106 34.9
Os02g0110700 Oryza sativa ssp. japonica HOM05D041147 ORTHO05D037118 7.7e-06 56.6 400 28.8
PSO675G7498 Papaver somniferum HOM05D001944 ORTHO05D002405 7.7e-06 56.6 112 37.5


User provided reference genes

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