Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 2.2e-188 662.1 338 100.0
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 4.2e-179 631.3 338 95.3
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 1.6e-167 592.8 341 88.3
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 1.1e-166 590.1 341 87.7
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 1.6e-162 576.2 341 85.9
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 4.3e-160 568.2 338 86.1
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.2e-133 480.3 338 70.4
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 2.3e-129 466.1 299 75.3
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 4.4e-128 461.8 341 67.2
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 5.7e-128 461.5 299 73.2
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 7.5e-128 461.1 341 66.9
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 7.5e-128 461.1 331 69.8
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 2.2e-127 459.5 328 69.2
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 2.8e-127 459.1 259 85.3
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 4.9e-127 458.4 338 67.2
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 2.4e-126 456.1 329 69.3
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 3.1e-126 455.7 297 72.4
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 9.2e-126 454.1 297 73.1
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 7.7e-125 451.1 298 71.1
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 4.3e-123 445.3 315 68.9
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 7.3e-123 444.5 340 65.3
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 1.2e-122 443.7 298 69.5
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 2.1e-122 443.0 319 68.0
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 2.8e-122 442.6 339 65.8
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 2.8e-122 442.6 339 65.5
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 3.6e-122 442.2 297 71.0
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 1.0e-121 440.7 296 69.6
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 1.0e-121 440.7 338 64.5
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 1.4e-121 440.3 316 67.4
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 1.8e-121 439.9 329 65.0
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 1.8e-121 439.9 329 65.0
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 2.3e-121 439.5 336 65.8
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 4.0e-121 438.7 296 70.3
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 6.8e-121 438.0 296 68.9
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 1.2e-120 437.2 339 64.3
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 1.5e-120 436.8 296 70.6
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 2.6e-120 436.0 340 63.5
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 4.4e-120 435.3 343 64.1
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 7.5e-120 434.5 297 70.0
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 2.2e-119 433.0 328 64.6
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 2.2e-119 433.0 327 64.8
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 2.9e-119 432.6 339 62.2
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 4.9e-119 431.8 340 63.2
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 6.4e-119 431.4 337 62.9
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 8.3e-119 431.0 340 66.5
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 8.3e-119 431.0 337 64.1
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 1.4e-118 430.3 337 65.3
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 1.8e-118 429.9 325 64.0
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 3.2e-118 429.1 348 60.6
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 5.4e-118 428.3 328 65.2
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 1.2e-117 427.2 314 69.1
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 2.7e-117 426.0 319 64.9
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 3.5e-117 425.6 296 68.6
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 5.9e-117 424.9 327 63.0
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 5.9e-117 424.9 329 64.7
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 3.9e-116 422.2 358 58.7
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 8.6e-116 421.0 297 69.0
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 8.6e-116 421.0 298 67.4
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 1.9e-115 419.9 318 64.2
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 3.3e-115 419.1 354 60.5
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 7.3e-115 417.9 311 63.7
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 9.5e-115 417.5 296 66.6
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 1.2e-114 417.2 336 62.2
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 1.6e-114 416.8 343 61.5
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.6e-114 416.8 332 64.5
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 1.6e-114 416.8 331 62.8
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 1.6e-114 416.8 368 58.7
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 2.1e-114 416.4 362 59.7
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.1e-114 416.4 334 62.3
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.1e-114 416.4 340 61.8
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.1e-114 416.4 340 61.8
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 2.1e-114 416.4 318 67.3
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 2.8e-114 416.0 316 63.6
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 3.6e-114 415.6 332 61.4
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 1.4e-113 413.7 327 64.2
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 1.8e-113 413.3 298 68.1
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 1.8e-113 413.3 295 67.1
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 3.1e-113 412.5 329 63.8
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 4.0e-113 412.1 342 60.5
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 5.2e-113 411.8 295 66.8
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 8.9e-113 411.0 295 66.4
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 2.0e-112 409.8 297 68.7
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.6e-112 409.5 296 65.9
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 4.4e-112 408.7 392 54.3
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 5.8e-112 408.3 296 68.6
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 7.5e-112 407.9 333 61.6
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 9.8e-112 407.5 296 67.9
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 9.8e-112 407.5 295 66.8
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 3.7e-111 405.6 289 66.1
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 4.9e-111 405.2 295 66.8
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 8.3e-111 404.4 295 65.1
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.1e-110 404.1 351 59.3
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 1.9e-110 403.3 341 60.4
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 3.2e-110 402.5 340 60.0
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 4.1e-110 402.1 297 64.0
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 4.1e-110 402.1 297 64.0
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.5e-109 399.1 297 63.3
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 3.0e-108 396.0 295 65.1
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 2.5e-107 392.9 318 60.4
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 3.3e-107 392.5 299 62.9
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.1e-106 389.8 332 62.0
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 1.1e-105 387.5 294 65.6
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.1e-105 386.0 296 63.9
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 5.2e-105 385.2 303 63.4
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 2.0e-104 383.3 338 60.4
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.9e-103 379.4 338 58.9
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 4.9e-103 378.6 338 58.6
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 2.1e-101 373.2 318 56.6
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.5e-99 367.1 333 53.8
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 5.6e-99 365.2 338 54.7
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 2.3e-97 359.8 303 57.4
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 4.4e-96 355.5 296 59.1
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 7.8e-93 344.7 252 71.8
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 3.6e-90 335.9 290 55.9
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 2.4e-89 333.2 315 52.1
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 4.0e-89 332.4 271 60.5
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 1.7e-87 327.0 297 55.6
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 7.8e-85 318.2 276 57.6
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 4.0e-81 305.8 292 51.7
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 6.9e-81 305.1 307 56.4
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 8.7e-76 288.1 381 42.5
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.1e-73 281.2 296 45.6
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.3e-71 274.2 297 45.5
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 1.4e-70 270.8 298 46.0
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 2.4e-70 270.0 316 48.7
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.1e-67 261.2 200 63.0
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 9.6e-67 258.1 292 42.8
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.5e-64 250.8 163 71.2
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.2e-62 243.0 202 60.9
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 2.3e-60 236.9 264 44.7
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 5.7e-51 205.7 196 53.1
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 2.8e-50 203.4 229 46.7
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 4.4e-43 179.5 283 36.4
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 3.6e-37 159.8 115 73.9
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 3.0e-36 156.8 84 84.5
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 8.2e-34 148.7 119 54.6
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 2.1e-29 134.0 140 53.6
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 3.6e-29 133.3 102 63.7
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 2.2e-26 124.0 72 77.8
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.6e-24 117.9 68 73.5
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 1.6e-24 117.9 92 56.5
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 1.3e-23 114.8 119 48.7
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 3.8e-23 113.2 70 72.9
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 5.5e-22 109.4 110 47.3
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 5.5e-22 109.4 119 47.9
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 6.8e-20 102.4 87 51.7
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 8.8e-20 102.1 117 46.2
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 7.5e-19 99.0 178 36.0
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 8.6e-15 85.5 60 63.3
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 8.6e-15 85.5 58 67.2
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 5.5e-14 82.8 64 59.4
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.6e-13 81.3 85 55.3
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 3.1e-09 67.0 64 53.1
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 4.1e-09 66.6 47 63.8
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 3.5e-08 63.5 91 35.2
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 6.6e-07 59.3 51 49.0


User provided reference genes

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