Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 2.1e-183 645.6 330 100.0
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 4.7e-167 591.3 330 92.4
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 2.8e-156 555.4 329 85.7
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 6.3e-156 554.3 330 85.8
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 4.1e-155 551.6 330 85.8
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 3.9e-153 545.0 327 85.3
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 7.3e-152 540.8 336 83.3
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 7.3e-120 434.5 331 68.3
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 4.6e-114 415.2 333 64.6
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.6e-111 406.8 331 63.7
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 3.1e-110 402.5 332 63.6
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 1.5e-109 400.2 328 62.8
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.6e-109 399.4 332 63.6
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 1.3e-108 397.1 330 62.1
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 1.7e-108 396.7 316 63.9
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 4.9e-108 395.2 324 65.7
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 6.4e-108 394.8 329 61.4
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 1.4e-107 393.7 328 62.8
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 1.9e-107 393.3 313 63.6
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 7.1e-107 391.3 329 63.2
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 3.5e-106 389.0 333 63.1
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 3.0e-105 386.0 329 63.2
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 6.7e-105 384.8 331 61.6
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 6.7e-105 384.8 256 73.0
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 4.3e-104 382.1 295 68.5
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 1.3e-103 380.6 331 62.5
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 1.3e-103 380.6 333 60.4
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.3e-103 380.6 325 61.5
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 2.1e-103 379.8 303 64.7
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.4e-102 377.1 325 62.5
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.1e-102 375.9 296 66.9
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 4.0e-102 375.6 326 60.4
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 6.9e-102 374.8 323 63.8
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 9.0e-102 374.4 323 63.8
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 2.0e-101 373.2 334 59.6
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 3.4e-101 372.5 330 60.9
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.5e-101 372.1 323 61.6
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.3e-100 370.5 334 59.3
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.7e-100 370.2 330 62.1
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 2.2e-100 369.8 288 66.0
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 4.9e-100 368.6 303 61.7
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 3.2e-99 365.9 303 61.7
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 7.1e-99 364.8 253 70.8
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 7.1e-99 364.8 325 60.3
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.2e-98 364.0 320 60.3
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 1.2e-98 364.0 328 57.9
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 1.2e-98 364.0 310 61.0
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 1.6e-98 363.6 306 62.4
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 3.5e-98 362.5 324 59.0
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 3.5e-98 362.5 328 57.6
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 4.6e-98 362.1 303 60.1
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 7.9e-98 361.3 334 58.1
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 7.9e-98 361.3 324 58.3
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 7.9e-98 361.3 325 58.5
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 1.3e-97 360.5 332 57.5
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.8e-97 360.1 332 59.0
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 2.3e-97 359.8 311 60.8
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 3.9e-97 359.0 303 60.1
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 3.9e-97 359.0 339 59.6
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 6.7e-97 358.2 307 60.9
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 6.7e-97 358.2 301 60.5
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 6.7e-97 358.2 301 60.5
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 8.7e-97 357.8 292 64.4
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.1e-96 357.5 321 60.7
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 1.5e-96 357.1 301 60.1
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.3e-96 355.9 321 60.1
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 7.4e-96 354.8 299 60.9
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 9.6e-96 354.4 301 59.8
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 2.1e-95 353.2 301 59.8
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 3.7e-95 352.4 329 56.8
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 1.1e-94 350.9 327 58.1
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.1e-94 350.9 326 59.2
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 6.9e-94 348.2 335 57.3
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 6.9e-94 348.2 327 59.0
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 1.2e-93 347.4 332 58.1
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 2.0e-93 346.7 306 59.2
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 3.4e-93 345.9 332 56.0
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 5.8e-93 345.1 297 63.0
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 5.8e-93 345.1 297 63.0
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 1.3e-92 344.0 328 54.6
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 2.2e-92 343.2 328 58.8
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 2.9e-92 342.8 335 55.2
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 6.5e-92 341.7 322 55.6
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 8.4e-92 341.3 328 55.2
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 1.1e-91 340.9 330 53.6
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 1.4e-91 340.5 262 66.0
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 7.9e-90 334.7 305 55.4
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 7.9e-90 334.7 324 54.3
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 6.7e-89 331.6 322 55.0
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 8.7e-89 331.3 327 52.3
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 1.1e-88 330.9 328 54.9
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 3.3e-88 329.3 332 53.6
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 4.3e-88 328.9 320 51.6
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 7.4e-88 328.2 329 52.6
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 9.7e-88 327.8 333 52.9
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.2e-87 326.6 320 51.6
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 6.3e-87 325.1 320 51.6
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 8.2e-87 324.7 328 54.0
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.8e-86 323.6 328 53.7
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 3.1e-86 322.8 280 63.2
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 4.1e-86 322.4 329 55.3
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 1.2e-85 320.9 326 50.9
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.6e-85 319.7 323 51.1
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.6e-85 319.7 323 51.4
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 3.4e-85 319.3 323 51.1
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.4e-85 319.3 323 51.4
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 1.0e-84 317.8 277 60.3
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 3.2e-83 312.8 265 59.6
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.6e-82 310.5 328 50.0
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.1e-82 310.1 328 50.3
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.6e-82 308.9 328 50.3
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 7.9e-82 308.1 346 48.6
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.4e-81 307.4 331 50.8
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.4e-81 307.4 320 50.9
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 3.0e-81 306.2 258 58.5
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 6.7e-81 305.1 300 54.3
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 8.8e-81 304.7 325 51.7
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 1.1e-80 304.3 328 50.3
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.1e-80 304.3 350 48.0
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.5e-80 303.1 315 50.8
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 3.3e-80 302.8 329 49.8
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 3.3e-80 302.8 327 49.8
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 3.3e-80 302.8 346 50.6
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 3.3e-80 302.8 255 60.8
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 4.3e-80 302.4 255 58.0
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 4.3e-80 302.4 328 51.8
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 9.7e-80 301.2 329 48.6
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 2.8e-79 299.7 306 50.3
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 4.8e-79 298.9 250 59.6
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 8.2e-79 298.1 302 50.0
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 1.4e-78 297.4 323 49.5
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 1.8e-78 297.0 257 59.1
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 4.1e-78 295.8 325 48.9
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 6.9e-78 295.0 334 48.2
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 1.2e-77 294.3 333 46.5
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 1.5e-77 293.9 331 46.5
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 7.7e-77 291.6 329 47.1
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 1.0e-76 291.2 267 60.3
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 1.7e-76 290.4 306 49.3
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 2.9e-76 289.7 285 51.2
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 1.9e-75 287.0 305 50.8
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 4.2e-75 285.8 324 47.8
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 7.2e-75 285.0 300 51.0
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 4.7e-74 282.3 324 46.9
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 6.1e-74 282.0 308 50.0
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 7.9e-74 281.6 325 45.8
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.4e-73 280.8 329 45.6
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 2.3e-73 280.0 327 45.9
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 7.0e-70 268.5 272 49.6
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 2.5e-67 260.0 288 46.5
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 2.0e-64 250.4 157 75.8
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 4.4e-64 249.2 278 50.4
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 5.3e-62 242.3 237 53.2
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 3.2e-59 233.0 159 67.9
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.0e-57 228.0 214 54.2
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.0e-56 223.8 154 71.4
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 7.5e-56 221.9 179 57.5
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.2e-52 210.3 148 71.6
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 8.5e-52 208.4 231 52.4
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 4.2e-51 206.1 223 52.5
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 2.0e-48 197.2 238 46.2
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 2.6e-48 196.8 286 46.2
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 2.3e-44 183.7 210 49.0
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.9e-43 180.6 232 44.8
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 5.9e-37 159.1 258 36.8
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 5.0e-36 156.0 107 74.8
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 5.0e-36 156.0 234 40.2
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.7e-31 141.0 89 74.2
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 1.3e-28 131.3 83 83.1
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 2.3e-25 120.6 93 63.4
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 2.6e-24 117.1 84 69.0
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.8e-24 115.9 76 71.1
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 4.6e-21 106.3 77 62.3
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 4.6e-21 106.3 125 40.8
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.2e-10 71.6 56 64.3
Ciclev10027336m.g Citrus clementina HOM05D003303 ORTHO05D003887 1.1e-06 58.5 101 41.6


User provided reference genes

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