Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.3e-69 265.4 131 100.0
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.9e-47 192.6 113 86.7
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.1e-31 140.2 110 66.4
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 4.8e-14 81.6 108 43.5
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 5.3e-13 78.2 42 88.1
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 6.9e-13 77.8 42 85.7
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 2.6e-12 75.9 42 81.0
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 2.6e-12 75.9 42 81.0
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.6e-12 75.9 42 81.0
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.4e-12 75.5 43 79.1
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 1.3e-11 73.6 42 83.3
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.2e-11 72.8 42 78.6
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.2e-11 72.8 42 78.6
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 2.9e-11 72.4 42 81.0
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 3.8e-11 72.0 43 76.7
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 3.8e-11 72.0 42 81.0
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 3.8e-11 72.0 48 70.8
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 5.0e-11 71.6 40 80.0
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 5.0e-11 71.6 41 80.5
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 5.0e-11 71.6 42 76.2
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 6.5e-11 71.2 39 87.2
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 8.4e-11 70.9 42 73.8
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 8.4e-11 70.9 73 54.8
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 8.4e-11 70.9 70 60.0
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 8.4e-11 70.9 42 78.6
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.4e-10 70.1 45 75.6
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 1.4e-10 70.1 42 76.2
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 1.4e-10 70.1 42 81.0
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.9e-10 69.7 48 70.8
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 1.9e-10 69.7 41 78.0
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 1.9e-10 69.7 41 80.5
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 2.5e-10 69.3 42 76.2
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 2.5e-10 69.3 42 76.2
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 3.2e-10 68.9 43 74.4
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 3.2e-10 68.9 43 74.4
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 3.2e-10 68.9 43 74.4
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 3.2e-10 68.9 42 78.6
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 3.2e-10 68.9 43 74.4
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 3.2e-10 68.9 42 76.2
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 3.2e-10 68.9 43 74.4
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 4.2e-10 68.6 42 76.2
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 4.2e-10 68.6 43 74.4
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 5.5e-10 68.2 48 64.6
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 5.5e-10 68.2 43 74.4
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 5.5e-10 68.2 43 72.1
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 7.2e-10 67.8 51 62.7
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 7.2e-10 67.8 43 69.8
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 7.2e-10 67.8 49 63.3
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 9.3e-10 67.4 61 57.4
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 9.3e-10 67.4 43 72.1
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 9.3e-10 67.4 42 73.8
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 9.3e-10 67.4 42 73.8
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.2e-09 67.0 49 63.3
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 1.2e-09 67.0 39 79.5
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 1.6e-09 66.6 40 77.5
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 1.6e-09 66.6 48 66.7
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 1.6e-09 66.6 49 69.4
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 1.6e-09 66.6 43 74.4
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.6e-09 66.6 48 66.7
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 1.6e-09 66.6 48 64.6
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 2.1e-09 66.2 43 69.8
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 2.1e-09 66.2 43 69.8
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 2.1e-09 66.2 49 63.3
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 2.1e-09 66.2 54 59.3
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 2.1e-09 66.2 43 72.1
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 2.1e-09 66.2 43 69.8
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 2.1e-09 66.2 42 71.4
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 2.7e-09 65.9 49 63.3
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 2.7e-09 65.9 42 69.0
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 2.7e-09 65.9 43 69.8
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 2.7e-09 65.9 43 72.1
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 2.7e-09 65.9 42 71.4
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 2.7e-09 65.9 48 62.5
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 2.7e-09 65.9 48 62.5
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 2.7e-09 65.9 48 62.5
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 2.7e-09 65.9 58 60.3
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 2.7e-09 65.9 43 67.4
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 2.7e-09 65.9 48 66.7
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 3.5e-09 65.5 43 69.8
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 3.5e-09 65.5 43 69.8
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 3.5e-09 65.5 43 69.8
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 3.5e-09 65.5 43 69.8
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 3.5e-09 65.5 43 69.8
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 3.5e-09 65.5 43 69.8
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 3.5e-09 65.5 43 74.4
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 3.5e-09 65.5 40 75.0
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 4.6e-09 65.1 36 80.6
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 4.6e-09 65.1 42 71.4
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 4.6e-09 65.1 42 71.4
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 4.6e-09 65.1 48 64.6
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 4.6e-09 65.1 42 71.4
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 4.6e-09 65.1 41 75.6
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 6.1e-09 64.7 43 67.4
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 6.1e-09 64.7 42 71.4
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 6.1e-09 64.7 49 63.3
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 6.1e-09 64.7 42 71.4
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 6.1e-09 64.7 42 71.4
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 6.1e-09 64.7 42 71.4
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 6.1e-09 64.7 42 69.0
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 6.1e-09 64.7 108 37.0
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 6.1e-09 64.7 42 71.4
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 6.1e-09 64.7 42 69.0
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 7.9e-09 64.3 42 69.0
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 7.9e-09 64.3 54 57.4
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 7.9e-09 64.3 46 63.0
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 7.9e-09 64.3 42 71.4
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 7.9e-09 64.3 42 66.7
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 7.9e-09 64.3 42 64.3
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 1.0e-08 63.9 43 62.8
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 1.3e-08 63.5 42 69.0
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 1.3e-08 63.5 43 69.8
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 1.8e-08 63.2 42 69.0
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 1.8e-08 63.2 42 69.0
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 1.8e-08 63.2 40 70.0
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 2.3e-08 62.8 42 66.7
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 2.3e-08 62.8 43 65.1
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 3.0e-08 62.4 43 67.4
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 3.0e-08 62.4 43 67.4
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 3.0e-08 62.4 42 66.7
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 6.7e-08 61.2 39 71.8
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 6.7e-08 61.2 42 66.7
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 8.7e-08 60.8 42 64.3
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 1.1e-07 60.5 40 70.0
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 1.1e-07 60.5 42 66.7
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 4.3e-07 58.5 36 69.4
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 5.7e-07 58.2 43 58.1
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 9.7e-07 57.4 42 54.8
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 6.3e-06 54.7 44 52.3


User provided reference genes

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