Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006564g0050 Nicotiana tabacum HOM05D006738 ORTHO05D008191 2.9e-73 278.5 140 100.0
PGSC0003DMG400005175 Solanum tuberosum HOM05D006738 ORTHO05D008191 7.5e-66 253.8 138 91.3
Solyc06g064810.3 Solanum lycopersicum HOM05D006738 ORTHO05D008191 2.2e-65 252.3 138 90.6
Sopen06g023320 Solanum pennellii HOM05D006738 ORTHO05D008191 2.2e-65 252.3 138 90.6
Migut.C01346 Erythranthe guttata HOM05D006738 ORTHO05D008191 1.2e-55 219.9 140 80.7
ECA234G1792 Erigeron canadensis HOM05D006738 ORTHO05D008191 1.1e-53 213.4 140 77.1
Lsat_1_v5_gn_5_78501 Lactuca sativa HOM05D006738 ORTHO05D008191 7.3e-53 210.7 137 75.2
Sc20g0004710 Simmondsia chinensis HOM05D006738 ORTHO05D008191 2.1e-52 209.1 140 75.7
Peaxi162Scf00269g01621 Petunia axillaris HOM05D006738 ORTHO05D008191 8.1e-52 207.2 138 79.0
CSS0018644 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 1.4e-51 206.5 143 77.6
CSS0019392 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 1.4e-51 206.5 143 77.6
unitig_748.g7730 Utricularia gibba HOM05D000331 ORTHO05D003399 8.9e-51 203.8 141 75.9
FAN04G1736 Fragaria x ananassa HOM05D006738 ORTHO05D008191 2.2e-49 199.1 142 72.5
arahy.Tifrunner.gnm1.ann1.67ZQRX Arachis hypogaea HOM05D006738 ORTHO05D008191 3.8e-49 198.4 138 73.2
arahy.Tifrunner.gnm1.ann1.WI646Q Arachis hypogaea HOM05D006738 ORTHO05D008191 3.8e-49 198.4 138 72.5
FvH4_5g25840 Fragaria vesca HOM05D006738 ORTHO05D008191 4.9e-49 198.0 142 72.5
FAN18G1689 Fragaria x ananassa HOM05D006738 ORTHO05D008191 4.9e-49 198.0 142 72.5
QL09p002987 Quercus lobata HOM05D006738 ORTHO05D008191 1.1e-48 196.8 143 69.9
Lj3g0020973 Lotus japonicus HOM05D006738 ORTHO05D008191 1.4e-48 196.4 139 71.9
VMungo1215G3331 Vigna mungo HOM05D006738 ORTHO05D008191 4.1e-48 194.9 136 72.1
Aqoxy6G00074 Aquilegia oxysepala HOM05D006738 ORTHO05D008191 5.4e-48 194.5 142 71.8
FAN08G0599 Fragaria x ananassa HOM05D006738 ORTHO05D008191 5.4e-48 194.5 142 71.8
CsaV3_5G040220 Cucumis sativus L. HOM05D006738 ORTHO05D008191 9.2e-48 193.7 139 74.1
PGR042G2463 Punica granatum HOM05D006738 ORTHO05D008191 9.2e-48 193.7 138 68.8
RcHm_v2.0_Chr7g0216321 Rosa chinensis HOM05D006738 ORTHO05D008191 9.2e-48 193.7 142 71.1
CDE05G2754 Ceratophyllum demersum HOM05D006738 ORTHO05D008191 1.2e-47 193.4 134 73.1
MD15G1400100 Malus domestica HOM05D006738 ORTHO05D008191 1.6e-47 193.0 139 71.2
Prupe.1G547300 Prunus persica HOM05D006738 ORTHO05D008191 1.6e-47 193.0 139 71.2
arahy.Tifrunner.gnm1.ann1.H480WY Arachis hypogaea HOM05D006738 ORTHO05D008191 2.1e-47 192.6 134 72.4
BolC6t36356H Brassica oleracea HOM05D006738 ORTHO05D008191 2.1e-47 192.6 138 70.3
EL10Ac9g22957 Beta vulgaris HOM05D006738 ORTHO05D008191 2.7e-47 192.2 141 68.8
Oeu048220.2 Olea europaea HOM05D006738 ORTHO05D008191 2.7e-47 192.2 138 71.7
Ah.01g012440 Amaranthus hybridus HOM05D006738 ORTHO05D008191 3.5e-47 191.8 138 73.2
BcaC08g43833 Brassica carinata HOM05D006738 ORTHO05D008191 4.6e-47 191.4 138 69.6
C06p12150 Brassica napus HOM05D006738 ORTHO05D008191 4.6e-47 191.4 138 69.6
BraA09t38801Z Brassica rapa HOM05D006738 ORTHO05D008191 7.8e-47 190.7 140 70.0
A09p32610 Brassica napus HOM05D006738 ORTHO05D008191 2.3e-46 189.1 140 69.3
Cc10_g09240 Coffea canephora HOM05D006738 ORTHO05D008191 3.0e-46 188.7 139 71.2
TWI14G1101 Tripterygium wilfordii HOM05D006738 ORTHO05D008191 3.0e-46 188.7 138 67.4
Haze_13918 Corylus avellana HOM05D006738 ORTHO05D008191 3.9e-46 188.3 145 68.3
Cpa.g.sc21.54 Carica papaya HOM05D006738 ORTHO05D008191 5.1e-46 188.0 135 71.1
MD08G1215600 Malus domestica HOM05D006738 ORTHO05D008191 5.1e-46 188.0 139 69.8
Sed0003815 Sechium edule HOM05D006738 ORTHO05D008191 1.9e-45 186.0 141 70.2
Potri.019G076400 Populus trichocarpa HOM05D006738 ORTHO05D008191 2.5e-45 185.7 140 70.0
AT1G33810 Arabidopsis thaliana HOM05D006738 ORTHO05D008191 3.3e-45 185.3 140 68.6
MELO3C022198.2 Cucumis melo HOM05D006738 ORTHO05D008191 3.3e-45 185.3 139 71.9
COL.COLO4_24620 Corchorus olitorius HOM05D006738 ORTHO05D008191 4.3e-45 184.9 139 68.3
DCAR_002119 Daucus carota HOM05D006738 ORTHO05D008191 9.6e-45 183.7 140 70.7
Gohir.A05G252100 Gossypium hirsutum HOM05D006738 ORTHO05D008191 1.6e-44 183.0 139 69.1
CANSAT11G1518 Cannabis sativa HOM05D006738 ORTHO05D008191 2.1e-44 182.6 139 67.6
Eucgr.F02960 Eucalyptus grandis HOM05D006738 ORTHO05D008191 2.1e-44 182.6 139 67.6
AL1G48260 Arabidopsis lyrata HOM05D006738 ORTHO05D008191 2.8e-44 182.2 141 66.7
Duzib211G0443 Durio zibethinus HOM05D006738 ORTHO05D008191 2.8e-44 182.2 141 68.8
Thecc.08G171800 Theobroma cacao HOM05D006738 ORTHO05D008191 2.8e-44 182.2 140 68.6
Gohir.D05G253900 Gossypium hirsutum HOM05D006738 ORTHO05D008191 3.6e-44 181.8 139 68.3
Sabra19G0086800 Salix brachista HOM05D006738 ORTHO05D008191 3.6e-44 181.8 140 67.9
Dinv41794 Davidia involucrata HOM05D006738 ORTHO05D008191 3.1e-43 178.7 146 65.8
HPP92_002035 Vanilla planifolia HOM05D006738 ORTHO05D008191 4.0e-43 178.3 134 69.4
SGA_v2.0_scaffold24G10619 Striga asiatica HOM05D006738 ORTHO05D008191 5.2e-43 177.9 139 68.3
Manes.02G195900 Manihot esculenta HOM05D006738 ORTHO05D008191 2.0e-42 176.0 143 65.0
Atru.chr12.822 Acer truncatum HOM05D006738 ORTHO05D008191 2.6e-42 175.6 141 65.2
Ciclev10022763m.g Citrus clementina HOM05D006738 ORTHO05D008191 5.8e-42 174.5 142 64.8
GSVIVG01025906001 Vitis vinifera HOM05D006738 ORTHO05D008191 5.8e-42 174.5 144 64.6
AUR62032974 Chenopodium quinoa HOM05D006738 ORTHO05D008191 9.9e-42 173.7 143 65.0
Lj2A790G37 Lonicera japonica HOM05D006738 ORTHO05D008191 1.3e-41 173.3 115 77.4
CiPaw.04G011300 Carya illinoinensis HOM05D006738 ORTHO05D008191 2.2e-41 172.6 141 63.8
THA.LOC104815902 Tarenaya hassleriana HOM05D006738 ORTHO05D008191 2.2e-41 172.6 138 66.7
TPR.G34128 Trifolium pratense HOM05D006738 ORTHO05D008191 2.2e-41 172.6 138 65.2
Phvul.002G133500 Phaseolus vulgaris HOM05D006738 ORTHO05D008191 4.9e-41 171.4 136 64.7
AUR62017706 Chenopodium quinoa HOM05D006738 ORTHO05D008191 8.4e-41 170.6 137 66.4
Psat0s2394g0120 Pisum sativum HOM05D006738 ORTHO05D008191 1.4e-40 169.9 136 66.2
QL09p004200 Quercus lobata HOM05D006738 ORTHO05D008191 4.2e-40 168.3 143 62.2
Glyma.01G010600 Glycine max HOM05D006738 ORTHO05D008191 7.1e-40 167.5 137 65.0
QL09p004074 Quercus lobata HOM05D006738 ORTHO05D008191 9.3e-40 167.2 143 61.5
Nn5g27492 Nelumbo nucifera HOM05D006738 ORTHO05D008191 1.2e-39 166.8 140 65.0
Aa31LG6G8130 Aethionema arabicum HOM05D000065 ORTHO05D000162 2.7e-39 165.6 131 61.1
Medtr4g031650 Medicago truncatula HOM05D006738 ORTHO05D008191 2.7e-39 165.6 138 61.6
CiPaw.03G017200 Carya illinoinensis HOM05D006738 ORTHO05D008191 6.0e-39 164.5 141 61.7
PSO782G5196 Papaver somniferum HOM05D006738 ORTHO05D008191 7.8e-39 164.1 138 63.8
BcaB07g33015 Brassica carinata HOM05D006738 ORTHO05D008191 6.6e-38 161.0 138 60.9
Os08g0112600 Oryza sativa ssp. japonica HOM05D006738 ORTHO05D008191 8.7e-38 160.6 142 59.2
Sp1g29140 Schrenkiella parvula HOM05D006738 ORTHO05D008191 1.1e-37 160.2 134 59.7
Rhsim07G0068100 Rhododendron simsii HOM05D006738 ORTHO05D008191 2.5e-37 159.1 158 57.6
Lalb_Chr01g0000011 Lupinus albus HOM05D006738 ORTHO05D008191 3.3e-37 158.7 134 62.7
PSO170G3684 Papaver somniferum HOM05D006738 ORTHO05D008191 3.3e-37 158.7 139 63.3
Thhalv10009075m.g Eutrema salsugineum HOM05D006738 ORTHO05D008191 5.6e-37 157.9 138 59.4
CARHR033210 Cardamine hirsuta HOM05D006738 ORTHO05D008191 9.6e-37 157.1 139 59.7
ATR1089G071 Amborella trichopoda HOM05D006738 ORTHO05D008191 2.8e-36 155.6 135 61.5
Carub.0001s3198 Capsella rubella HOM05D006738 ORTHO05D008191 2.6e-34 149.1 141 58.2
QL09p000479 Quercus lobata HOM05D006738 ORTHO05D008191 2.6e-34 149.1 119 68.1
Cfa008114 Carpinus fangiana HOM05D006738 ORTHO05D008191 4.9e-33 144.8 138 57.2
Gorai.009G265500 Gossypium raimondii HOM05D006738 ORTHO05D008191 2.1e-31 139.4 114 64.9
MBI03_g14516_MAGBIO Magnolia biondii HOM05D006738 ORTHO05D008191 6.0e-31 137.9 98 70.4
QL09p000342 Quercus lobata HOM05D006738 ORTHO05D008191 1.0e-30 137.1 142 56.3
QL09p000618 Quercus lobata HOM05D006738 ORTHO05D008191 1.3e-30 136.7 112 67.0
Actinidia29399 Actinidia chinensis HOM05D006738 ORTHO05D008191 1.4e-27 126.7 110 60.0
AagrBONN_evm.TU.Sc2ySwM_228.5134 Anthoceros agrestis HOM05D006738 ORTHO05D008191 3.1e-27 125.6 127 47.2
CiPaw.09G026000 Carya illinoinensis HOM05D006738 ORTHO05D008191 3.1e-27 125.6 141 48.9
vmacro13762 Vaccinium macrocarpon HOM05D006738 ORTHO05D008191 5.3e-27 124.8 131 55.7
ClCG08G000640 Citrullus lanatus HOM05D006738 ORTHO05D008191 2.6e-26 122.5 345 31.9
Cc10_g16410 Coffea canephora HOM05D006738 ORTHO05D008191 2.6e-26 122.5 77 76.6
SMO118G0306 Selaginella moellendorffii HOM05D006738 ORTHO05D008191 3.4e-26 122.1 135 47.4
Pp3c3_5650 Physcomitrium patens HOM05D006738 ORTHO05D008191 7.6e-26 120.9 128 46.9
Mapoly0047s0047 Marchantia polymorpha HOM05D006738 ORTHO05D008191 1.6e-23 113.2 111 51.4
Zm00001eb236960 Zea mays HOM05D002538 ORTHO05D008191 3.0e-22 109.0 113 50.4
QL09p003020 Quercus lobata HOM05D006738 ORTHO05D008191 8.7e-22 107.5 70 74.3
HanXRQChr10g0309751 Helianthus annuus HOM05D006738 ORTHO05D008191 1.6e-20 103.2 76 69.7
SEGI_33861 Sequoiadendron giganteum HOM05D006738 ORTHO05D008191 2.1e-20 102.8 115 49.6
Zm00001eb260580 Zea mays HOM05D006738 ORTHO05D008191 3.7e-20 102.1 119 46.2
FAN13G2380 Fragaria x ananassa HOM05D006738 ORTHO05D008191 9.0e-19 97.4 140 45.7
Oeu017736.2 Olea europaea HOM05D006738 ORTHO05D008191 7.6e-18 94.4 87 59.8
CiPaw.16G110800 Carya illinoinensis HOM05D006738 ORTHO05D008191 1.4e-16 90.1 66 68.2
Hma1.2p1_0935F.1_g238700 Hydrangea macrophylla HOM05D006738 ORTHO05D008191 1.0e-14 84.0 42 90.5
Medtr4g031845 Medicago truncatula HOM05D006738 ORTHO05D008191 2.5e-13 79.3 67 59.7
SHI08988 Sapria himalayana HOM05D006738 ORTHO05D008191 3.3e-13 79.0 77 50.6
Glyma.09G210500 Glycine max HOM05D006738 ORTHO05D008191 1.1e-11 73.9 73 52.1
Hma1.2p1_0935F.1_g238670 Hydrangea macrophylla HOM05D006738 ORTHO05D008191 1.2e-10 70.5 50 72.0
PRCOL_00001928 Prasinoderma coloniale HOM05D006738 ORTHO05D008191 6.5e-09 64.7 71 39.4
Zm00001eb166970 Zea mays HOM05D002538 ORTHO05D003162 2.3e-06 56.2 79 41.8
Zm00001eb223600 Zea mays HOM05D002538 ORTHO05D008191 2.3e-06 56.2 75 44.0
Zm00001eb351370 Zea mays HOM05D002538 ORTHO05D003162 2.3e-06 56.2 81 43.2


User provided reference genes

Program Settings