Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 4.0e-53 211.1 99 100.0
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 1.7e-43 179.1 83 98.8
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 4.8e-43 177.6 83 97.6
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 4.8e-43 177.6 83 97.6
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.6e-41 172.6 83 95.2
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 2.3e-40 168.7 84 94.0
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 3.6e-38 161.4 81 88.9
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 7.5e-36 153.7 78 85.9
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 2.2e-35 152.1 83 79.5
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 6.3e-35 150.6 122 63.1
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 8.3e-35 150.2 75 89.3
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 8.3e-35 150.2 83 79.5
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 1.1e-34 149.8 75 85.3
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 1.4e-34 149.4 83 80.7
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 3.1e-34 148.3 74 89.2
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 4.1e-34 147.9 75 86.7
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 5.4e-34 147.5 83 79.5
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 7.0e-34 147.1 83 78.3
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 9.2e-34 146.7 75 84.0
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.6e-33 146.0 75 85.3
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 2.0e-33 145.6 82 78.0
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.7e-33 145.2 74 86.5
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.7e-33 145.2 74 86.5
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 3.5e-33 144.8 83 78.3
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 4.5e-33 144.4 74 85.1
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 4.5e-33 144.4 75 84.0
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 5.9e-33 144.1 75 81.3
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 5.9e-33 144.1 76 82.9
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 7.8e-33 143.7 75 82.7
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 7.8e-33 143.7 75 84.0
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 7.8e-33 143.7 75 82.7
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 1.0e-32 143.3 75 82.7
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 1.0e-32 143.3 77 77.9
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 1.3e-32 142.9 80 77.5
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 2.3e-32 142.1 75 81.3
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 2.3e-32 142.1 82 76.8
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.9e-32 141.7 82 75.6
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 3.8e-32 141.4 75 84.0
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 5.0e-32 141.0 75 81.3
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 5.0e-32 141.0 78 80.8
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 6.6e-32 140.6 82 74.4
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 6.6e-32 140.6 82 76.8
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 6.6e-32 140.6 75 80.0
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 8.6e-32 140.2 75 81.3
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 8.6e-32 140.2 75 81.3
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 1.1e-31 139.8 75 77.3
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 1.1e-31 139.8 75 80.0
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 1.1e-31 139.8 75 80.0
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 1.5e-31 139.4 75 82.7
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 1.5e-31 139.4 75 82.7
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.5e-31 139.4 74 82.4
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 1.5e-31 139.4 75 80.0
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 1.5e-31 139.4 83 74.7
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 1.9e-31 139.0 79 77.2
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 2.5e-31 138.7 75 81.3
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 2.5e-31 138.7 75 80.0
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 2.5e-31 138.7 75 82.7
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 2.5e-31 138.7 75 80.0
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.5e-31 138.7 75 81.3
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 3.3e-31 138.3 73 83.6
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 3.3e-31 138.3 65 92.3
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 3.3e-31 138.3 75 80.0
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 4.3e-31 137.9 73 82.2
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 5.6e-31 137.5 75 76.0
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 7.3e-31 137.1 75 76.0
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 7.3e-31 137.1 73 80.8
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 9.5e-31 136.7 81 76.5
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 9.5e-31 136.7 75 77.3
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 9.5e-31 136.7 75 77.3
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 9.5e-31 136.7 75 77.3
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 9.5e-31 136.7 75 80.0
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.2e-30 136.3 75 81.3
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 1.2e-30 136.3 75 76.0
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.2e-30 136.3 75 76.0
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 1.6e-30 136.0 75 80.0
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.1e-30 135.6 73 80.8
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 2.8e-30 135.2 83 71.1
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.8e-30 135.2 76 77.6
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 2.8e-30 135.2 75 78.7
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 3.6e-30 134.8 75 78.7
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 4.7e-30 134.4 77 76.6
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 4.7e-30 134.4 75 74.7
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 4.7e-30 134.4 90 70.0
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 4.7e-30 134.4 75 76.0
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 6.1e-30 134.0 74 78.4
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 6.1e-30 134.0 73 79.5
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 6.1e-30 134.0 72 80.6
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 8.0e-30 133.7 73 79.5
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 8.0e-30 133.7 74 77.0
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 8.0e-30 133.7 75 76.0
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 1.4e-29 132.9 74 79.7
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 1.4e-29 132.9 68 80.9
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 1.4e-29 132.9 75 78.7
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 2.3e-29 132.1 74 75.7
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 2.3e-29 132.1 75 73.3
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 2.3e-29 132.1 75 74.7
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 4.0e-29 131.3 75 76.0
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 4.0e-29 131.3 79 70.9
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 5.2e-29 131.0 74 77.0
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 5.2e-29 131.0 74 77.0
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 8.9e-29 130.2 75 74.7
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 8.9e-29 130.2 67 80.6
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 1.2e-28 129.8 81 70.4
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.2e-28 129.8 75 74.7
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.2e-28 129.8 75 77.3
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.2e-28 129.8 75 77.3
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 1.5e-28 129.4 75 73.3
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 1.5e-28 129.4 75 74.7
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 2.6e-28 128.6 92 67.4
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 2.6e-28 128.6 75 73.3
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 2.6e-28 128.6 75 76.0
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.4e-28 128.3 92 67.4
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.4e-28 127.9 75 73.3
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.3e-27 126.3 75 76.0
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 1.3e-27 126.3 84 64.3
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.1e-26 123.2 69 75.4
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.1e-26 123.2 62 87.1
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 1.8e-26 122.5 75 70.7
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 7.0e-26 120.6 62 83.9
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 1.6e-25 119.4 75 69.3
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 2.0e-25 119.0 75 68.0
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 2.7e-25 118.6 76 73.7
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 5.9e-25 117.5 75 64.0
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 1.3e-24 116.3 75 68.0
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 1.3e-24 116.3 75 69.3
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 3.0e-24 115.2 79 62.0
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.0e-24 114.4 75 70.7
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 5.0e-24 114.4 62 83.9
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.1e-23 113.2 67 73.1
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.9e-23 112.5 65 73.8
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 2.5e-23 112.1 64 75.0
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.5e-23 112.1 75 62.7
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 5.6e-23 110.9 69 72.5
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 5.6e-23 110.9 62 75.8
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 9.5e-23 110.2 75 65.3
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 2.1e-22 109.0 65 73.8
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.8e-22 108.6 71 71.8
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 6.2e-22 107.5 59 79.7
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 4.0e-21 104.8 66 69.7
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 5.2e-21 104.4 71 67.6
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 4.4e-20 101.3 57 77.2
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.2e-19 99.0 75 57.3
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 3.7e-19 98.2 52 78.8
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 8.3e-19 97.1 70 57.1
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.2e-17 93.2 53 79.2
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 1.2e-17 93.2 46 84.8
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.8e-14 82.0 74 58.1
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.6e-14 81.6 42 85.7
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 1.1e-13 80.1 59 61.0
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.4e-13 79.7 41 85.4


User provided reference genes

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