Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 0.0e+00 1264.2 646 100.0
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.4e-308 1062.4 664 84.3
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 1.1e-292 1009.6 664 80.1
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 1.8e-292 1008.8 664 80.1
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 4.2e-289 997.7 664 78.9
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 2.9e-261 905.2 664 72.9
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 1.8e-247 859.4 518 85.9
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 9.9e-238 827.0 665 64.7
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 3.2e-236 822.0 664 63.7
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 6.7e-234 814.3 630 65.1
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 5.3e-231 804.7 665 62.4
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 1.2e-227 793.5 669 63.2
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 2.3e-226 789.3 665 62.4
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 3.9e-226 788.5 665 61.4
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 3.3e-225 785.4 630 63.2
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 9.6e-225 783.9 665 61.2
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 6.2e-224 781.2 665 60.2
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 1.4e-223 780.0 665 61.5
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 1.2e-222 776.9 631 63.4
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 2.6e-222 775.8 667 61.0
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 3.4e-222 775.4 689 59.1
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 5.8e-222 774.6 630 62.5
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 2.2e-221 772.7 630 62.1
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 2.2e-221 772.7 576 68.2
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 5.0e-221 771.5 664 60.5
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 6.5e-221 771.2 630 61.3
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 5.5e-220 768.1 630 61.6
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 2.7e-219 765.8 665 60.2
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 3.5e-219 765.4 630 60.6
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 3.5e-219 765.4 664 59.8
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 1.0e-218 763.8 690 58.4
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 1.8e-218 763.1 664 60.1
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 5.1e-218 761.5 652 60.9
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 6.7e-218 761.1 665 59.4
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 6.7e-218 761.1 631 60.5
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 2.2e-216 756.1 629 62.0
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 6.3e-216 754.6 575 66.1
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 6.3e-216 754.6 630 59.5
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 1.1e-215 753.8 630 59.7
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 2.4e-215 752.7 666 59.6
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 5.3e-215 751.5 630 60.0
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 6.9e-215 751.1 691 56.4
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 2.0e-214 749.6 630 60.3
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 2.0e-214 749.6 665 58.9
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 2.0e-214 749.6 630 60.0
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 2.6e-214 749.2 665 59.4
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 3.4e-214 748.8 630 60.2
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 3.4e-214 748.8 695 56.7
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 1.3e-213 746.9 630 60.5
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 1.4e-210 736.9 629 61.4
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 1.4e-210 736.9 629 60.4
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 2.5e-209 732.6 629 60.3
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 7.4e-209 731.1 634 58.8
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 2.2e-208 729.6 619 61.2
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 3.7e-208 728.8 630 58.7
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 3.7e-208 728.8 699 55.8
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 6.3e-208 728.0 630 59.5
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 8.2e-208 727.6 630 60.5
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 1.1e-207 727.2 630 58.9
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.2e-206 723.8 574 64.3
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 1.7e-205 719.9 666 56.3
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 2.2e-205 719.5 647 57.3
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 8.5e-205 717.6 666 56.5
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 1.4e-204 716.8 712 54.5
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 2.5e-204 716.1 666 56.5
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 3.2e-204 715.7 666 56.3
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 9.4e-204 714.1 630 57.8
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 2.7e-203 712.6 630 57.8
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 2.3e-202 709.5 666 56.0
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 2.3e-202 709.5 666 55.9
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 1.1e-201 707.2 706 53.4
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 1.5e-201 706.8 630 57.3
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 2.0e-201 706.4 666 55.0
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 1.1e-199 700.7 671 54.7
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 1.8e-199 699.9 630 59.2
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 1.5e-198 696.8 666 54.5
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 2.2e-197 693.0 725 51.9
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 3.8e-197 692.2 630 57.9
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 6.5e-197 691.4 630 56.2
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 1.9e-196 689.9 691 52.8
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.3e-194 682.9 665 56.4
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 2.8e-192 676.0 647 57.5
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 2.0e-190 669.8 667 54.3
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 2.3e-186 656.4 717 51.0
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 2.0e-185 653.3 630 54.1
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 3.4e-185 652.5 690 52.8
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 4.5e-182 642.1 529 59.9
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 2.9e-181 639.4 529 61.4
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 1.1e-180 637.5 631 52.8
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 2.7e-179 632.9 631 52.8
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 1.0e-178 630.9 594 56.7
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 1.4e-178 630.6 631 53.7
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 2.2e-176 623.2 661 51.1
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 2.2e-176 623.2 644 52.8
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 4.2e-172 609.0 630 51.6
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.8e-171 606.3 597 53.6
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 1.5e-164 583.9 499 60.9
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 4.7e-163 578.9 665 49.3
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 6.0e-158 562.0 665 47.8
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 1.6e-139 500.7 652 43.3
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 7.6e-137 491.9 627 44.0
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 1.7e-133 480.7 357 68.1
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 5.3e-114 416.0 662 38.8
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 6.9e-106 389.0 537 43.2
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 4.8e-99 366.3 315 60.3
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 7.4e-84 315.8 365 51.0
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 7.7e-81 305.8 306 53.9
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 8.2e-75 285.8 359 47.4
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 6.1e-70 269.6 246 58.9
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 3.5e-65 253.8 662 30.2
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 5.9e-57 226.5 247 49.4
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 1.2e-38 165.6 313 32.6
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 6.0e-33 146.7 528 28.0
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 6.6e-32 143.3 113 61.9
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 2.2e-27 128.3 172 40.7
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 7.3e-23 113.2 115 53.0
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 9.9e-20 102.8 290 26.9
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 6.9e-13 80.1 64 56.2
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 5.8e-12 77.0 50 70.0
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 7.6e-12 76.6 73 56.2
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.2e-11 75.1 47 72.3
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 4.9e-11 73.9 152 34.2
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 8.4e-11 73.2 42 76.2
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 8.4e-11 73.2 86 47.7
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.4e-10 72.4 73 54.8
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 1.9e-10 72.0 42 76.2
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 2.4e-10 71.6 61 55.7
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 2.4e-10 71.6 61 55.7
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 1.6e-09 68.9 42 78.6
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 4.6e-09 67.4 102 36.3
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 3.7e-06 57.8 91 35.2
SGA_v2.0_scaffold17G07933 Striga asiatica HOM05D002544 ORTHO05D399483 8.1e-06 56.6 36 63.9


User provided reference genes

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