Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006555g0060 Nicotiana tabacum HOM05D006431 ORTHO05D007918 2.8e-171 605.1 293 100.0
Nitab4.5_0001801g0020 Nicotiana tabacum HOM05D006431 ORTHO05D007918 5.3e-138 494.6 332 77.4
Sopen10g032630 Solanum pennellii HOM05D006431 ORTHO05D007918 1.2e-126 456.8 328 71.6
CAN.G841.8 Capsicum annuum HOM05D006431 ORTHO05D007918 1.6e-126 456.4 328 71.3
Solyc10g083160.2 Solanum lycopersicum HOM05D006431 ORTHO05D007918 2.7e-126 455.7 328 71.3
Peaxi162Scf01662g00115 Petunia axillaris HOM05D006431 ORTHO05D007918 7.0e-122 441.0 326 68.4
Cc00_g18360 Coffea canephora HOM05D006431 ORTHO05D007918 1.3e-99 367.1 326 57.1
Actinidia04011 Actinidia chinensis HOM05D006431 ORTHO05D007918 1.1e-98 364.0 331 55.6
Actinidia03906 Actinidia chinensis HOM05D006431 ORTHO05D007918 1.8e-98 363.2 331 55.6
CSS0044043 Camellia sinensis var. sinensis HOM05D006431 ORTHO05D007918 3.1e-98 362.5 331 56.8
FvH4_6g19780 Fragaria vesca HOM05D006431 ORTHO05D007918 1.5e-95 353.6 312 58.0
RcHm_v2.0_Chr3g0475131 Rosa chinensis HOM05D006431 ORTHO05D007918 1.9e-95 353.2 312 58.3
Atru.chr8.1414 Acer truncatum HOM05D006431 ORTHO05D007918 2.5e-95 352.8 326 55.2
GSVIVG01033921001 Vitis vinifera HOM05D006431 ORTHO05D007918 3.3e-95 352.4 328 54.3
FAN05G1952 Fragaria x ananassa HOM05D006431 ORTHO05D007918 4.2e-95 352.1 311 57.9
Potri.006G206200 Populus trichocarpa HOM05D006431 ORTHO05D007918 5.5e-95 351.7 331 54.7
Dinv31736 Davidia involucrata HOM05D006431 ORTHO05D007918 1.6e-94 350.1 305 58.7
FAN09G4399 Fragaria x ananassa HOM05D006431 ORTHO05D007918 1.6e-94 350.1 293 61.1
FAN02G3461 Fragaria x ananassa HOM05D006431 ORTHO05D007918 3.6e-94 349.0 312 57.4
QL07p037629 Quercus lobata HOM05D006431 ORTHO05D007918 3.6e-94 349.0 327 55.0
Rhsim03G0067800 Rhododendron simsii HOM05D006431 ORTHO05D007918 6.1e-94 348.2 321 58.3
FAN05G2067 Fragaria x ananassa HOM05D006431 ORTHO05D007918 8.0e-94 347.8 311 57.6
Manes.08G030500 Manihot esculenta HOM05D006431 ORTHO05D007918 1.0e-93 347.4 331 53.8
FAN14G3124 Fragaria x ananassa HOM05D006431 ORTHO05D007918 1.8e-93 346.7 324 56.2
MD14G1033800 Malus domestica HOM05D006431 ORTHO05D007918 2.3e-93 346.3 328 54.6
MSTRG.26617 Avicennia marina HOM05D006431 ORTHO05D007918 5.2e-93 345.1 327 54.7
Medtr7g105640 Medicago truncatula HOM05D006431 ORTHO05D007918 8.9e-93 344.4 308 57.1
arahy.Tifrunner.gnm1.ann1.P24J4F Arachis hypogaea HOM05D006431 ORTHO05D007918 1.5e-92 343.6 324 53.7
TPR.G23342 Trifolium pratense HOM05D006431 ORTHO05D007918 3.4e-92 342.4 308 57.5
Lj1g0021923 Lotus japonicus HOM05D006431 ORTHO05D007918 5.7e-92 341.7 308 57.5
CANSAT64G0076 Cannabis sativa HOM05D006431 ORTHO05D007918 9.8e-92 340.9 314 56.7
Ciclev10011702m.g Citrus clementina HOM05D006431 ORTHO05D007918 1.3e-91 340.5 312 57.1
HanXRQChr01g0025171 Helianthus annuus HOM05D006431 ORTHO05D007918 1.3e-91 340.5 309 57.0
vmacro07456 Vaccinium macrocarpon HOM05D006431 ORTHO05D007918 1.7e-91 340.1 373 49.1
SGA_v2.0_scaffold35G14028 Striga asiatica HOM05D006431 ORTHO05D007918 2.2e-91 339.7 306 55.9
Migut.L01812 Erythranthe guttata HOM05D006431 ORTHO05D007918 4.9e-91 338.6 309 57.0
COL.COLO4_29622 Corchorus olitorius HOM05D006431 ORTHO05D007918 6.3e-91 338.2 327 52.6
CiPaw.10G014500 Carya illinoinensis HOM05D006431 ORTHO05D007918 1.1e-90 337.4 324 54.6
Glyma.03G199700 Glycine max HOM05D006431 ORTHO05D007918 1.1e-90 337.4 308 57.8
Lj1A1036G18 Lonicera japonica HOM05D006431 ORTHO05D007918 2.4e-90 336.3 324 54.6
Nn2g14247 Nelumbo nucifera HOM05D006431 ORTHO05D007918 3.1e-90 335.9 324 53.7
Thecc.05G099600 Theobroma cacao HOM05D006431 ORTHO05D007918 4.1e-90 335.5 326 52.1
Glyma.19G197300 Glycine max HOM05D006431 ORTHO05D007918 1.2e-89 334.0 308 57.1
DCAR_013426 Daucus carota HOM05D006431 ORTHO05D007918 1.6e-89 333.6 310 57.1
arahy.Tifrunner.gnm1.ann1.262DHG Arachis hypogaea HOM05D006431 ORTHO05D007918 3.5e-89 332.4 333 52.9
VMungo1383G3444 Vigna mungo HOM05D006431 ORTHO05D007918 3.5e-89 332.4 310 56.1
PSO801G0006 Papaver somniferum HOM05D006431 ORTHO05D007918 4.5e-89 332.0 308 56.5
PSO801G0231 Papaver somniferum HOM05D006431 ORTHO05D007918 1.3e-88 330.5 308 56.5
Psat3g030600 Pisum sativum HOM05D006431 ORTHO05D007918 1.7e-88 330.1 308 56.5
Duzib093G0136 Durio zibethinus HOM05D006431 ORTHO05D007918 2.3e-88 329.7 325 51.4
Ca_09036_v3 Cicer arietinum L. HOM05D006431 ORTHO05D007918 1.5e-87 327.0 343 50.1
Lalb_Chr20g0111521 Lupinus albus HOM05D006431 ORTHO05D007918 1.5e-87 327.0 308 55.5
ECA248G2099 Erigeron canadensis HOM05D006431 ORTHO05D007918 1.9e-87 326.6 328 50.9
Aqoxy2G01023 Aquilegia oxysepala HOM05D006431 ORTHO05D007918 3.3e-87 325.9 310 53.5
Phvul.001G193600 Phaseolus vulgaris HOM05D006431 ORTHO05D007918 3.3e-87 325.9 316 54.4
SalBow5G2287 Salvia bowleyana HOM05D006431 ORTHO05D007918 9.5e-87 324.3 307 55.7
Cfa016661 Carpinus fangiana HOM05D006431 ORTHO05D007918 1.6e-86 323.6 328 51.8
Gorai.006G151400 Gossypium raimondii HOM05D006431 ORTHO05D007918 1.6e-86 323.6 326 50.9
Lsat_1_v5_gn_1_57580 Lactuca sativa HOM05D006431 ORTHO05D007918 1.6e-86 323.6 301 55.8
Gohir.A09G137300 Gossypium hirsutum HOM05D006431 ORTHO05D007918 2.8e-86 322.8 324 51.2
AUR62006262 Chenopodium quinoa HOM05D006431 ORTHO05D007918 3.6e-86 322.4 327 50.8
THA.LOC104826813 Tarenaya hassleriana HOM05D006431 ORTHO05D007918 6.1e-86 321.6 329 50.5
Eucgr.A02614 Eucalyptus grandis HOM05D006431 ORTHO05D007918 1.8e-85 320.1 312 54.5
PGR004G1888 Punica granatum HOM05D006431 ORTHO05D007918 2.3e-85 319.7 328 51.8
Prupe.7G099200 Prunus persica HOM05D006431 ORTHO05D007918 5.2e-85 318.5 328 52.4
AUR62028512 Chenopodium quinoa HOM05D006431 ORTHO05D007918 6.8e-85 318.2 311 53.1
ClCG10G018580 Citrullus lanatus HOM05D006431 ORTHO05D007918 6.8e-85 318.2 314 51.6
Haze_19670 Corylus avellana HOM05D006431 ORTHO05D007918 8.9e-85 317.8 382 46.1
TWI74G1016 Tripterygium wilfordii HOM05D006431 ORTHO05D007918 8.9e-85 317.8 331 50.8
Ah.15g090560 Amaranthus hybridus HOM05D006431 ORTHO05D007918 3.4e-84 315.8 327 49.5
Sc02g0000490 Simmondsia chinensis HOM05D006431 ORTHO05D007918 5.8e-84 315.1 328 50.0
EL10Ac7g16823 Beta vulgaris HOM05D006431 ORTHO05D007918 7.5e-84 314.7 314 53.8
CsaV3_3G037660 Cucumis sativus L. HOM05D006431 ORTHO05D007918 2.2e-83 313.2 330 49.4
Sed0017910 Sechium edule HOM05D006431 ORTHO05D007918 2.2e-83 313.2 315 51.4
Oeu017704.1 Olea europaea HOM05D006431 ORTHO05D007918 8.3e-83 311.2 457 40.3
Aa31sc52G40 Aethionema arabicum HOM05D006431 ORTHO05D007918 1.4e-82 310.5 358 48.0
Thhalv10013633m.g Eutrema salsugineum HOM05D006431 ORTHO05D007918 7.0e-82 308.1 312 51.6
Os12g0157200 Oryza sativa ssp. japonica HOM05D006431 ORTHO05D007918 7.0e-82 308.1 324 48.5
Hund03878 Selenicereus undatus HOM05D006431 ORTHO05D007918 9.2e-82 307.8 310 52.3
unitig_899.g15199 Utricularia gibba HOM05D006431 ORTHO05D007918 9.2e-82 307.8 327 47.4
MELO3C009510.2 Cucumis melo HOM05D006431 ORTHO05D007918 1.6e-81 307.0 310 52.6
Zm00001eb407020 Zea mays HOM05D006431 ORTHO05D007918 1.6e-81 307.0 315 51.7
ATR0772G016 Amborella trichopoda HOM05D006431 ORTHO05D007918 3.5e-81 305.8 312 49.4
AT5G06260 Arabidopsis thaliana HOM05D006431 ORTHO05D007918 3.5e-81 305.8 312 51.3
Sp6g36610 Schrenkiella parvula HOM05D006431 ORTHO05D007918 3.5e-81 305.8 312 51.9
CARHR206960 Cardamine hirsuta HOM05D006431 ORTHO05D007918 1.7e-80 303.5 312 51.9
C09p70630 Brassica napus HOM05D006431 ORTHO05D007918 2.3e-80 303.1 312 51.0
Carub.0006s0514 Capsella rubella HOM05D006431 ORTHO05D007918 8.6e-80 301.2 315 51.1
BcaC06g32355 Brassica carinata HOM05D006431 ORTHO05D007918 1.1e-79 300.8 316 50.3
AL6G16280 Arabidopsis lyrata HOM05D006431 ORTHO05D007918 1.5e-79 300.4 312 50.6
BraA10t45060Z Brassica rapa HOM05D006431 ORTHO05D007918 1.2e-78 297.4 312 50.6
BcaC06g32336 Brassica carinata HOM05D006431 ORTHO05D007918 3.6e-78 295.8 315 51.4
BolC9t59819H Brassica oleracea HOM05D006431 ORTHO05D007918 3.6e-78 295.8 315 51.4
HPP92_023016 Vanilla planifolia HOM05D006431 ORTHO05D007918 1.1e-77 294.3 331 45.6
Sabra06G0159100 Salix brachista HOM05D006431 ORTHO05D007918 3.5e-73 279.3 473 37.4
MBI17_g39691_MAGBIO Magnolia biondii HOM05D006431 ORTHO05D007918 1.3e-72 277.3 160 77.5
MBI17_g45031_MAGBIO Magnolia biondii HOM05D006431 ORTHO05D007918 1.7e-72 276.9 160 77.5
Pp3c10_6920 Physcomitrium patens HOM05D006431 ORTHO05D007918 2.6e-68 263.1 312 44.6
Cpa.g.sc104.72 Carica papaya HOM05D006431 ORTHO05D007918 2.4e-66 256.5 346 43.1
Mapoly0002s0288 Marchantia polymorpha HOM05D006431 ORTHO05D007918 3.3e-63 246.1 324 42.0
MBI18_g45360_MAGBIO Magnolia biondii HOM05D006431 ORTHO05D007918 1.2e-62 244.2 163 68.1
SMO358G0080 Selaginella moellendorffii HOM05D006431 ORTHO05D007918 1.2e-62 244.2 312 42.0
A10p30220 Brassica napus HOM05D006431 ORTHO05D007918 6.2e-62 241.9 260 49.2
CDE12G0869 Ceratophyllum demersum HOM05D006431 ORTHO05D007918 1.6e-49 200.7 289 45.0
Thhalv10029204m.g Eutrema salsugineum HOM05D006431 ORTHO05D007918 1.4e-42 177.6 229 44.5
PSO339G1068 Papaver somniferum HOM05D006431 ORTHO05D007918 5.1e-40 169.1 206 47.6
SEGI_13589 Sequoiadendron giganteum HOM05D006431 ORTHO05D007918 9.3e-34 148.3 120 54.2
HPP92_023056 Vanilla planifolia HOM05D006431 ORTHO05D007918 1.8e-29 134.0 97 62.9
Cre10.g436950 Chlamydomonas reinhardtii HOM05D006431 ORTHO05D007918 3.2e-26 123.2 123 45.5
AagrBONN_evm.TU.Sc2ySwM_368.1429 Anthoceros agrestis HOM05D006431 ORTHO05D007918 1.2e-25 121.3 245 29.4
MBI17_g27947_MAGBIO Magnolia biondii HOM05D006431 ORTHO05D007918 1.2e-25 121.3 67 74.6
MBI17_g46230_MAGBIO Magnolia biondii HOM05D006431 ORTHO05D007918 3.5e-25 119.8 62 79.0
SEGI_02239 Sequoiadendron giganteum HOM05D006431 ORTHO05D007918 3.7e-22 109.8 59 71.2
Mapoly0102s0056 Marchantia polymorpha HOM05D002111 ORTHO05D002160 4.5e-12 76.3 121 32.2
CBR_g49969 Chara braunii HOM05D002111 ORTHO05D002160 1.3e-11 74.7 125 32.8
AT4G34070 Arabidopsis thaliana HOM05D006431 ORTHO05D007918 6.5e-11 72.4 82 45.1
CBR_g38909 Chara braunii HOM05D002111 ORTHO05D002160 6.5e-11 72.4 124 29.0
Cre10.g439550 Chlamydomonas reinhardtii HOM05D002111 ORTHO05D002160 9.4e-10 68.6 119 31.9
MCO11G192 Micromonas commoda HOM05D006431 ORTHO05D007918 2.1e-09 67.4 180 26.7
CAN.G220.74 Capsicum annuum HOM05D002111 ORTHO05D002160 7.9e-09 65.5 125 33.6
Sopen12g032760 Solanum pennellii HOM05D002111 ORTHO05D002160 1.0e-08 65.1 126 31.7
PGSC0003DMG400029252 Solanum tuberosum HOM05D002111 ORTHO05D002160 1.0e-08 65.1 126 31.7
Solyc12g096950.2 Solanum lycopersicum HOM05D002111 ORTHO05D002160 1.4e-08 64.7 126 31.7
Os06g0221100 Oryza sativa ssp. japonica HOM05D002111 ORTHO05D002160 2.3e-08 63.9 123 29.3
CAN.G566.16 Capsicum annuum HOM05D002111 ORTHO05D002160 3.0e-08 63.5 126 31.0
Lj5g0023029 Lotus japonicus HOM05D002111 ORTHO05D002160 3.0e-08 63.5 123 31.7
Zm00001eb306200 Zea mays HOM05D002111 ORTHO05D002160 3.0e-08 63.5 126 29.4
CANSAT78G1669 Cannabis sativa HOM05D002111 ORTHO05D002160 8.8e-08 62.0 123 31.7
Solyc09g090670.3 Solanum lycopersicum HOM05D002111 ORTHO05D002160 8.8e-08 62.0 125 32.0
Sopen09g033610 Solanum pennellii HOM05D002111 ORTHO05D002160 8.8e-08 62.0 125 32.0
TPR.G28844 Trifolium pratense HOM05D002111 ORTHO05D002160 8.8e-08 62.0 123 31.7
Medtr1g073340 Medicago truncatula HOM05D002111 ORTHO05D002160 1.1e-07 61.6 123 30.9
arahy.Tifrunner.gnm1.ann1.B8DRML Arachis hypogaea HOM05D002111 ORTHO05D002160 2.0e-07 60.8 123 30.1
Eucgr.H02928 Eucalyptus grandis HOM05D002111 ORTHO05D002160 2.0e-07 60.8 123 32.5
Os07g0438700 Oryza sativa ssp. japonica HOM05D002111 ORTHO05D002160 2.0e-07 60.8 127 30.7
PGSC0003DMG400017147 Solanum tuberosum HOM05D002111 ORTHO05D002160 2.0e-07 60.8 125 32.0
CDE10G1312 Ceratophyllum demersum HOM05D002111 ORTHO05D002160 2.6e-07 60.5 123 28.5
Migut.B00256 Erythranthe guttata HOM05D002111 ORTHO05D002160 3.3e-07 60.1 123 31.7
Lsat_1_v5_gn_1_4140 Lactuca sativa HOM05D002111 ORTHO05D002160 3.3e-07 60.1 123 27.6
Lsat_1_v5_gn_3_117720 Lactuca sativa HOM05D002111 ORTHO05D002160 3.3e-07 60.1 123 27.6
Lsat_1_v5_gn_7_101900 Lactuca sativa HOM05D002111 ORTHO05D002160 3.3e-07 60.1 123 27.6
Lsat_1_v5_gn_8_152961 Lactuca sativa HOM05D002111 ORTHO05D002160 3.3e-07 60.1 123 27.6
Potri.010G065900 Populus trichocarpa HOM05D002111 ORTHO05D002160 3.3e-07 60.1 123 30.9
Actinidia35815 Actinidia chinensis HOM05D002111 ORTHO05D002160 4.4e-07 59.7 125 30.4
Manes.15G045500 Manihot esculenta HOM05D002111 ORTHO05D002160 4.4e-07 59.7 123 30.1
DCAR_010085 Daucus carota HOM05D002111 ORTHO05D002160 5.7e-07 59.3 123 27.6
GSVIVG01027912001 Vitis vinifera HOM05D002111 ORTHO05D002160 7.4e-07 58.9 123 30.1
CsaV3_1G024120 Cucumis sativus L. HOM05D006431 ORTHO05D007918 9.7e-07 58.5 78 38.5
PSO764G0281 Papaver somniferum HOM05D002111 ORTHO05D002160 9.7e-07 58.5 123 30.9
Peaxi162Scf00153g01715 Petunia axillaris HOM05D002111 ORTHO05D002160 9.7e-07 58.5 123 31.7
Nitab4.5_0011782g0030 Nicotiana tabacum HOM05D002111 ORTHO05D002160 1.3e-06 58.2 109 33.0
Pp3c23_20180 Physcomitrium patens HOM05D002111 ORTHO05D002160 1.3e-06 58.2 123 27.6
CSS0008784 Camellia sinensis var. sinensis HOM05D002111 ORTHO05D002160 1.7e-06 57.8 125 28.8
Nitab4.5_0008835g0050 Nicotiana tabacum HOM05D002111 ORTHO05D002160 1.7e-06 57.8 109 33.0
PSO832G3785 Papaver somniferum HOM05D002111 ORTHO05D002160 2.8e-06 57.0 123 30.1
Pp3c8_17090 Physcomitrium patens HOM05D002111 ORTHO05D002160 2.8e-06 57.0 123 28.5
ClCG05G004020 Citrullus lanatus HOM05D002111 ORTHO05D002160 3.7e-06 56.6 125 28.0
Nitab4.5_0000194g0220 Nicotiana tabacum HOM05D002111 ORTHO05D002160 3.7e-06 56.6 123 30.9
Nitab4.5_0002751g0070 Nicotiana tabacum HOM05D002111 ORTHO05D002160 3.7e-06 56.6 123 30.9
Prupe.1G047600 Prunus persica HOM05D002111 ORTHO05D002160 3.7e-06 56.6 123 28.5
SalBow6G2507 Salvia bowleyana HOM05D002111 ORTHO05D002160 4.8e-06 56.2 123 30.1
SalBow6G5083 Salvia bowleyana HOM05D002111 ORTHO05D002160 4.8e-06 56.2 123 30.1
Ca_09803_v3 Cicer arietinum L. HOM05D002111 ORTHO05D002160 6.3e-06 55.8 120 31.7
Ca_30484_v3 Cicer arietinum L. HOM05D002111 ORTHO05D002160 6.3e-06 55.8 120 31.7
FvH4_7g01241 Fragaria vesca HOM05D015851 ORTHO05D007918 6.3e-06 55.8 33 72.7
HanXRQChr14g0445771 Helianthus annuus HOM05D002111 ORTHO05D002160 6.3e-06 55.8 123 27.6


User provided reference genes

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