Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 6.0e-62 240.7 127 100.0
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.6e-46 189.5 129 78.3
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 2.1e-46 189.1 129 78.3
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 8.2e-27 124.0 129 55.8
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 5.8e-25 117.9 125 54.4
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 1.4e-23 113.2 127 51.2
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 5.5e-23 111.3 127 54.3
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 1.8e-21 106.3 128 50.0
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 6.3e-19 97.8 70 67.1
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 4.5e-17 91.7 89 55.1
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.0e-16 90.5 125 47.2
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 1.3e-16 90.1 74 60.8
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 2.2e-16 89.4 92 54.3
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 2.9e-16 89.0 85 56.5
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 3.8e-16 88.6 90 54.4
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 8.5e-16 87.4 90 54.4
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 2.5e-15 85.9 70 60.0
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 2.5e-15 85.9 87 52.9
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 3.2e-15 85.5 68 58.8
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 4.2e-15 85.1 89 51.7
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 5.5e-15 84.7 89 52.8
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 9.4e-15 84.0 67 61.2
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 1.6e-14 83.2 65 64.6
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.6e-14 83.2 85 54.1
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 3.6e-14 82.0 73 54.8
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 4.6e-14 81.6 120 44.2
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 4.6e-14 81.6 120 44.2
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 6.1e-14 81.3 78 52.6
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 6.1e-14 81.3 105 47.6
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 7.9e-14 80.9 69 56.5
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 7.9e-14 80.9 78 53.8
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.0e-13 80.5 69 56.5
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.8e-13 79.7 86 48.8
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.8e-13 79.7 86 48.8
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 2.3e-13 79.3 80 55.0
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 2.3e-13 79.3 83 49.4
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 2.3e-13 79.3 83 49.4
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 3.0e-13 79.0 89 50.6
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.9e-13 78.6 86 47.7
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 6.7e-13 77.8 67 58.2
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 1.5e-12 76.6 69 56.5
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 1.5e-12 76.6 83 48.2
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 2.5e-12 75.9 63 58.7
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 2.5e-12 75.9 63 58.7
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 4.3e-12 75.1 77 51.9
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 5.7e-12 74.7 69 53.6
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 7.4e-12 74.3 69 53.6
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 9.7e-12 73.9 87 51.7
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 1.3e-11 73.6 69 50.7
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.7e-11 73.2 76 51.3
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 2.8e-11 72.4 77 49.4
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 3.7e-11 72.0 72 54.2
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 4.8e-11 71.6 78 48.7
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 4.8e-11 71.6 70 57.1
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 4.8e-11 71.6 70 55.7
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 4.8e-11 71.6 70 57.1
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 4.8e-11 71.6 70 55.7
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 4.8e-11 71.6 70 57.1
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 4.8e-11 71.6 70 55.7
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 4.8e-11 71.6 70 57.1
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 6.3e-11 71.2 87 52.9
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 8.2e-11 70.9 70 54.3
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 1.1e-10 70.5 70 55.7
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 1.1e-10 70.5 70 54.3
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 1.1e-10 70.5 70 55.7
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 1.1e-10 70.5 70 54.3
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 1.1e-10 70.5 81 49.4
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.8e-10 69.7 81 49.4
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 2.4e-10 69.3 70 54.3
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 2.4e-10 69.3 73 49.3
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 3.1e-10 68.9 64 50.0
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 5.3e-10 68.2 67 55.2
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 6.9e-10 67.8 70 52.9
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 6.9e-10 67.8 62 58.1
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 6.9e-10 67.8 62 53.2
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 9.1e-10 67.4 70 52.9
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 9.1e-10 67.4 70 52.9
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 9.1e-10 67.4 78 48.7
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 1.2e-09 67.0 80 48.8
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 1.5e-09 66.6 65 50.8
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.5e-09 66.6 64 57.8
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 2.0e-09 66.2 70 51.4
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 2.0e-09 66.2 70 51.4
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 2.6e-09 65.9 70 51.4
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 2.6e-09 65.9 70 51.4
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 2.6e-09 65.9 70 51.4
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 3.4e-09 65.5 70 50.0
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 3.4e-09 65.5 81 48.1
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 4.5e-09 65.1 80 47.5
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.0e-08 63.9 70 50.0
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.0e-08 63.9 81 49.4
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.0e-08 63.9 81 46.9
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 1.3e-08 63.5 80 46.2
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 1.3e-08 63.5 80 46.2
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 1.3e-08 63.5 62 56.5
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 1.7e-08 63.2 79 45.6
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 1.7e-08 63.2 80 43.8
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 2.2e-08 62.8 62 51.6
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 2.9e-08 62.4 80 45.0
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 5.0e-08 61.6 61 49.2
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 6.5e-08 61.2 81 46.9
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 8.5e-08 60.8 77 45.5
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 8.5e-08 60.8 79 41.8
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 1.9e-07 59.7 83 45.8
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.9e-07 59.7 80 43.8
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.9e-07 59.7 81 46.9
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 2.5e-07 59.3 81 44.4
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 2.5e-07 59.3 79 45.6
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 2.5e-07 59.3 61 49.2
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 2.5e-07 59.3 62 50.0
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 3.2e-07 58.9 81 43.2
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 3.2e-07 58.9 81 43.2
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 3.2e-07 58.9 81 43.2
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 3.2e-07 58.9 81 43.2
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 4.2e-07 58.5 81 42.0
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 4.2e-07 58.5 81 42.0
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 4.2e-07 58.5 81 42.0
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 4.2e-07 58.5 47 61.7
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 4.2e-07 58.5 77 42.9
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 4.2e-07 58.5 80 45.0
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 4.2e-07 58.5 78 43.6
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 5.5e-07 58.2 79 44.3
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 5.5e-07 58.2 81 43.2
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 5.5e-07 58.2 61 47.5
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 5.5e-07 58.2 81 43.2
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 5.5e-07 58.2 80 43.8
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 7.2e-07 57.8 78 47.4
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 1.2e-06 57.0 62 46.8
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.2e-06 57.0 81 40.7
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 1.2e-06 57.0 81 43.2
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.6e-06 56.6 81 40.7
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.6e-06 56.6 67 41.8
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 1.6e-06 56.6 61 47.5
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 2.1e-06 56.2 67 46.3
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 2.1e-06 56.2 80 45.0
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.1e-06 56.2 61 47.5
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 2.1e-06 56.2 82 40.2
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 2.1e-06 56.2 82 40.2
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 2.7e-06 55.8 81 40.7
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 2.7e-06 55.8 81 40.7
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 2.7e-06 55.8 81 40.7
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 2.7e-06 55.8 81 40.7
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 2.7e-06 55.8 80 42.5
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 2.7e-06 55.8 81 44.4
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 2.7e-06 55.8 77 40.3
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 3.6e-06 55.5 70 44.3
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 3.6e-06 55.5 62 45.2
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 3.6e-06 55.5 61 45.9
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 3.6e-06 55.5 85 36.5
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 3.6e-06 55.5 81 42.0
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 4.7e-06 55.1 81 40.7
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 4.7e-06 55.1 47 57.4
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 4.7e-06 55.1 82 41.5
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 4.7e-06 55.1 80 42.5
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 6.1e-06 54.7 62 45.2
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 6.1e-06 54.7 62 45.2
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 6.1e-06 54.7 67 41.8
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 7.9e-06 54.3 80 40.0


User provided reference genes

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