Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 1.1e-184 649.8 326 100.0
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 1.2e-170 603.2 315 96.2
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 2.5e-157 558.9 310 88.7
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 1.8e-155 552.7 310 89.0
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 5.3e-155 551.2 310 89.0
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 5.0e-153 544.7 336 82.7
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 1.0e-145 520.4 287 90.6
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 2.7e-114 416.0 292 68.8
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 3.5e-114 415.6 306 67.3
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 2.9e-113 412.5 296 68.2
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 1.6e-111 406.8 327 63.0
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 1.8e-110 403.3 309 64.1
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.2e-109 400.6 305 65.2
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 7.5e-109 397.9 316 63.6
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 4.9e-108 395.2 273 70.3
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 1.4e-107 393.7 290 66.2
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 3.2e-107 392.5 308 64.3
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 5.4e-107 391.7 264 73.1
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 9.2e-107 391.0 305 63.6
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 1.6e-106 390.2 309 63.1
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 2.0e-106 389.8 270 68.5
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 2.0e-106 389.8 264 70.5
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 2.7e-106 389.4 287 66.6
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 2.7e-106 389.4 264 72.0
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 4.6e-106 388.7 268 69.0
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 7.8e-106 387.9 270 69.3
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.0e-105 387.5 275 68.4
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 1.0e-105 387.5 270 69.3
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 2.3e-105 386.3 279 66.7
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 2.3e-105 386.3 291 63.9
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 2.3e-105 386.3 259 71.4
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 2.3e-105 386.3 305 62.0
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 3.0e-105 386.0 263 70.3
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 3.0e-105 386.0 292 67.5
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 3.9e-105 385.6 266 69.2
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 1.1e-104 384.0 286 65.7
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 1.1e-104 384.0 277 68.2
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 1.5e-104 383.6 272 69.1
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 1.9e-104 383.3 289 66.4
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 1.9e-104 383.3 270 68.1
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 2.5e-104 382.9 280 66.1
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 3.3e-104 382.5 264 68.9
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 4.3e-104 382.1 266 69.5
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 5.6e-104 381.7 307 61.6
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 7.3e-104 381.3 291 66.0
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 7.3e-104 381.3 270 68.9
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 7.3e-104 381.3 269 69.5
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 2.1e-103 379.8 262 71.0
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 2.8e-103 379.4 265 70.6
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 2.8e-103 379.4 270 68.1
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 2.8e-103 379.4 271 67.9
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 3.6e-103 379.0 268 69.0
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 4.7e-103 378.6 270 65.6
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 6.2e-103 378.3 265 70.2
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 8.0e-103 377.9 298 63.8
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 8.0e-103 377.9 285 61.8
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 8.0e-103 377.9 275 67.3
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 2.3e-102 376.3 265 67.5
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 3.1e-102 375.9 306 60.1
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 1.2e-101 374.0 271 66.1
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 1.5e-101 373.6 290 62.8
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 2.0e-101 373.2 279 66.7
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 2.0e-101 373.2 271 65.7
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 4.4e-101 372.1 265 67.5
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.7e-100 370.2 274 66.4
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 2.2e-100 369.8 265 65.3
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 1.4e-99 367.1 275 65.8
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 2.4e-99 366.3 274 66.4
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 7.0e-99 364.8 275 65.1
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 2.0e-98 363.2 265 64.5
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 2.7e-98 362.8 276 63.4
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 4.6e-98 362.1 275 64.7
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 4.6e-98 362.1 269 65.1
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 6.0e-98 361.7 215 79.5
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 7.8e-98 361.3 297 58.9
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 1.7e-97 360.1 277 65.7
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 1.7e-97 360.1 275 64.0
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 1.7e-97 360.1 266 66.9
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 3.9e-97 359.0 305 58.7
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 8.6e-97 357.8 243 69.5
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 1.1e-96 357.5 280 62.1
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 1.5e-96 357.1 311 59.2
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 2.5e-96 356.3 314 58.0
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 4.3e-96 355.5 277 62.5
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 5.6e-96 355.1 275 63.3
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 4.7e-95 352.1 299 57.2
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 4.7e-95 352.1 299 57.2
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 8.1e-95 351.3 305 56.7
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 5.2e-94 348.6 373 50.7
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 6.8e-94 348.2 366 51.6
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 1.2e-93 347.4 257 63.8
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 3.4e-93 345.9 304 57.2
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 4.4e-93 345.5 243 70.4
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 5.8e-93 345.1 302 56.3
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 7.5e-93 344.7 234 68.4
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 1.3e-92 344.0 273 59.7
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 2.9e-92 342.8 264 61.7
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 4.6e-90 335.5 309 54.4
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 1.0e-89 334.3 287 56.4
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 3.0e-89 332.8 215 74.4
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 1.9e-88 330.1 237 64.6
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 5.6e-88 328.6 303 54.8
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 9.9e-85 317.8 280 54.3
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.3e-84 317.4 280 54.3
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 2.9e-84 316.2 270 55.2
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 3.8e-84 315.8 235 65.1
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 1.7e-81 307.0 247 62.8
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 3.9e-81 305.8 301 56.8
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 1.2e-79 300.8 261 58.6
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 4.0e-78 295.8 188 74.5
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 6.9e-78 295.0 183 76.0
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 3.9e-73 279.3 244 54.9
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 4.9e-68 262.3 206 60.7
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 6.0e-66 255.4 263 52.9
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 4.8e-63 245.7 225 54.2
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 1.5e-53 214.2 213 51.6
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 2.3e-49 200.3 174 57.5
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 8.7e-49 198.4 234 46.6
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 2.8e-47 193.4 124 71.8
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 3.8e-44 183.0 124 71.0
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 3.3e-40 169.9 169 53.3
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 6.1e-26 122.5 92 66.3
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.9e-19 100.9 75 70.7
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.9e-19 100.9 75 70.7
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 2.1e-18 97.4 164 39.0
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 6.7e-17 92.4 68 63.2
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 1.2e-16 91.7 68 66.2
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 1.3e-15 88.2 214 31.3
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 1.7e-15 87.8 116 40.5
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 1.7e-15 87.8 212 33.5
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 2.2e-15 87.4 196 33.2
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 4.8e-15 86.3 217 31.3
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 6.3e-15 85.9 225 31.1
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 1.4e-14 84.7 197 31.0
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.4e-14 84.0 222 30.6
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 3.1e-14 83.6 227 29.5
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 3.1e-14 83.6 128 35.9
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 9.1e-14 82.0 116 37.9
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 9.1e-14 82.0 194 32.0
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 1.2e-13 81.6 200 30.0
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 1.2e-13 81.6 186 31.7
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 1.6e-13 81.3 216 30.6
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 1.6e-13 81.3 186 31.2
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 2.0e-13 80.9 191 29.3
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 2.0e-13 80.9 153 34.0
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 2.0e-13 80.9 217 30.9
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 2.7e-13 80.5 225 31.1
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 2.7e-13 80.5 155 33.5
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 3.5e-13 80.1 186 31.7
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 3.5e-13 80.1 186 31.7
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 3.5e-13 80.1 114 46.5
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 5.9e-13 79.3 239 30.1
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 5.9e-13 79.3 126 34.9
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 7.7e-13 79.0 193 31.6
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 7.7e-13 79.0 225 30.7
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 1.7e-12 77.8 193 32.1
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 2.2e-12 77.4 191 29.3
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 3.8e-12 76.6 196 30.6
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 3.8e-12 76.6 142 32.4
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 8.5e-12 75.5 131 35.9
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 1.1e-11 75.1 138 31.9
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 1.9e-11 74.3 213 28.6
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 3.2e-11 73.6 126 34.1
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 3.2e-11 73.6 162 32.7
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 4.2e-11 73.2 195 28.7
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 7.2e-11 72.4 224 28.6
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 9.4e-11 72.0 226 28.8
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 1.2e-10 71.6 217 29.5
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 1.2e-10 71.6 125 36.0
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 6.1e-10 69.3 126 37.3
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 6.1e-10 69.3 264 25.8
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 8.0e-10 68.9 203 29.1
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 1.0e-09 68.6 90 40.0
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.0e-09 68.6 269 27.1
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 1.4e-09 68.2 90 40.0
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 8.8e-09 65.5 181 29.3
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 7.5e-08 62.4 107 32.7
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 2.8e-07 60.5 63 44.4
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 2.8e-07 60.5 192 28.6
Phvul.L001633 Phaseolus vulgaris HOM05D008272 ORTHO05D010429 3.7e-07 60.1 48 54.2
GSVIVG01009661001 Vitis vinifera HOM05D003844 ORTHO05D004534 4.8e-07 59.7 145 29.0
EL10Ac1g01762 Beta vulgaris HOM05D003844 ORTHO05D004534 1.4e-06 58.2 158 27.2
AUR62033852 Chenopodium quinoa HOM05D003844 ORTHO05D004534 2.4e-06 57.4 128 29.7
AUR62041676 Chenopodium quinoa HOM05D003844 ORTHO05D004534 2.4e-06 57.4 126 30.2
Dinv36050 Davidia involucrata HOM05D003844 ORTHO05D004534 3.1e-06 57.0 149 26.8


User provided reference genes

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