Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006514g0010 Nicotiana tabacum HOM05D006455 ORTHO05D008098 3.3e-300 1034.2 524 100.0
Nitab4.5_0000077g0170 Nicotiana tabacum HOM05D006455 ORTHO05D008098 3.0e-285 984.6 524 95.6
Sopen09g013040 Solanum pennellii HOM05D006455 ORTHO05D008098 1.7e-240 835.9 509 82.9
Peaxi162Scf00315g00814 Petunia axillaris HOM05D006455 ORTHO05D008098 3.1e-229 798.5 491 83.7
Solyc09g020150.4 Solanum lycopersicum HOM05D006455 ORTHO05D008098 1.5e-220 769.6 495 80.0
Migut.D00764 Erythranthe guttata HOM05D006455 ORTHO05D008098 1.7e-171 606.7 515 59.4
Cc04_g10320 Coffea canephora HOM05D006455 ORTHO05D008098 5.0e-171 605.1 512 59.8
GSVIVG01001915001 Vitis vinifera HOM05D006455 ORTHO05D008098 1.5e-167 593.6 511 60.3
TAR362G0985 Trochodendron aralioides HOM05D006455 ORTHO05D008098 1.3e-166 590.5 511 60.1
Haze_08072 Corylus avellana HOM05D006455 ORTHO05D008098 3.7e-166 589.0 511 60.1
Cfa012584 Carpinus fangiana HOM05D006455 ORTHO05D008098 1.2e-164 583.9 511 59.5
CiPaw.12G071600 Carya illinoinensis HOM05D006455 ORTHO05D008098 2.9e-163 579.3 514 57.6
MSTRG.18514 Avicennia marina HOM05D006455 ORTHO05D008098 2.5e-162 576.2 511 58.1
SGA_v2.0_scaffold158G37512 Striga asiatica HOM05D006455 ORTHO05D008098 3.0e-160 569.3 529 56.3
Manes.12G057502 Manihot esculenta HOM05D006455 ORTHO05D008098 2.7e-156 556.2 513 56.5
Manes.12G057904 Manihot esculenta HOM05D006455 ORTHO05D008098 3.5e-156 555.8 513 56.5
Lj1A106T21 Lonicera japonica HOM05D006455 ORTHO05D008098 4.2e-154 548.9 499 59.1
Manes.12G057700 Manihot esculenta HOM05D006455 ORTHO05D008098 3.6e-153 545.8 513 56.3
Manes.12G057901 Manihot esculenta HOM05D006455 ORTHO05D008098 3.6e-153 545.8 513 56.3
FvH4_5g32260 Fragaria vesca HOM05D006455 ORTHO05D008098 6.8e-152 541.6 511 54.2
FAN18G4165 Fragaria x ananassa HOM05D006455 ORTHO05D008098 4.4e-151 538.9 511 53.8
Rhsim13G0055500 Rhododendron simsii HOM05D006455 ORTHO05D008098 5.7e-151 538.5 520 55.0
CSS0002127 Camellia sinensis var. sinensis HOM05D006455 ORTHO05D008098 1.3e-150 537.3 432 60.2
TWI75G0274 Tripterygium wilfordii HOM05D006455 ORTHO05D008098 6.3e-150 535.0 513 55.2
CsaV3_3G001300 Cucumis sativus L. HOM05D006455 ORTHO05D008098 8.3e-150 534.6 519 52.2
Gohir.A11G144500 Gossypium hirsutum HOM05D006455 ORTHO05D008098 8.3e-150 534.6 507 55.2
HanXRQChr01g0013871 Helianthus annuus HOM05D006455 ORTHO05D008098 1.8e-149 533.5 512 55.7
HanXRQChr01g0014041 Helianthus annuus HOM05D006455 ORTHO05D008098 2.4e-149 533.1 509 55.8
Gorai.007G161800 Gossypium raimondii HOM05D006455 ORTHO05D008098 3.1e-149 532.7 507 54.8
ECA248G0009 Erigeron canadensis HOM05D006455 ORTHO05D008098 4.1e-149 532.3 510 54.7
Lsat_1_v5_gn_5_176300 Lactuca sativa HOM05D006455 ORTHO05D008098 3.5e-148 529.3 517 54.5
Prupe.2G049600 Prunus persica HOM05D006455 ORTHO05D008098 5.9e-148 528.5 510 52.9
Hund02815 Selenicereus undatus HOM05D006455 ORTHO05D008098 5.9e-148 528.5 509 53.0
FAN13G0315 Fragaria x ananassa HOM05D006455 ORTHO05D008098 1.0e-147 527.7 510 53.1
Thecc.01G205700 Theobroma cacao HOM05D006455 ORTHO05D008098 1.3e-147 527.3 511 55.2
Atru.chr6.3495 Acer truncatum HOM05D006455 ORTHO05D008098 2.9e-147 526.2 524 53.8
RcHm_v2.0_Chr7g0228451 Rosa chinensis HOM05D006455 ORTHO05D008098 6.5e-147 525.0 510 54.9
PGSC0003DMG402020303 Solanum tuberosum HOM05D006455 ORTHO05D008098 8.6e-147 524.6 341 80.6
Nn1g09557 Nelumbo nucifera HOM05D006455 ORTHO05D008098 1.5e-146 523.9 510 54.3
AUR62028628 Chenopodium quinoa HOM05D006455 ORTHO05D008098 9.5e-146 521.2 509 51.7
Eucgr.K02350 Eucalyptus grandis HOM05D006455 ORTHO05D008098 1.4e-144 517.3 512 54.1
MD02G1270700 Malus domestica HOM05D006455 ORTHO05D008098 2.3e-144 516.5 510 51.2
Potri.014G174300 Populus trichocarpa HOM05D006455 ORTHO05D008098 2.3e-144 516.5 514 54.7
Ciclev10014895m.g Citrus clementina HOM05D006455 ORTHO05D008098 5.2e-144 515.4 519 53.6
QL12p000818 Quercus lobata HOM05D006455 ORTHO05D008098 5.2e-144 515.4 503 54.5
CANSAT21G2240 Cannabis sativa HOM05D006455 ORTHO05D008098 1.2e-143 514.2 512 52.7
AUR62008053 Chenopodium quinoa HOM05D006455 ORTHO05D008098 1.3e-142 510.8 512 49.4
Sc05g0001610 Simmondsia chinensis HOM05D006455 ORTHO05D008098 2.2e-142 510.0 513 51.7
Aqoxy2G04132 Aquilegia oxysepala HOM05D006455 ORTHO05D008098 2.4e-141 506.5 510 51.4
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 3.1e-141 506.1 490 54.3
ClCG10G001240 Citrullus lanatus HOM05D006455 ORTHO05D008098 1.2e-140 504.2 496 55.6
PGR044G2428 Punica granatum HOM05D006455 ORTHO05D008098 1.0e-139 501.1 514 51.9
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 2.3e-139 500.0 519 49.1
MELO3C013818.2 Cucumis melo HOM05D006455 ORTHO05D008098 1.9e-138 496.9 496 53.2
Sabra14G0133600 Salix brachista HOM05D006455 ORTHO05D008098 7.3e-138 495.0 515 52.4
COL.COLO4_29922 Corchorus olitorius HOM05D006455 ORTHO05D008098 5.2e-136 488.8 526 52.3
AT5G48340 Arabidopsis thaliana HOM05D006455 ORTHO05D008098 1.5e-135 487.3 510 51.0
Lalb_Chr16g0391751 Lupinus albus HOM05D006455 ORTHO05D008098 2.2e-134 483.4 511 50.1
Sp2g18700 Schrenkiella parvula HOM05D006455 ORTHO05D008098 1.4e-133 480.7 513 50.3
BcaC06g30805 Brassica carinata HOM05D006455 ORTHO05D008098 2.4e-133 479.9 515 50.9
A06p39230 Brassica napus HOM05D006455 ORTHO05D008098 9.2e-133 478.0 513 51.1
CARHR183890 Cardamine hirsuta HOM05D006455 ORTHO05D008098 9.2e-133 478.0 509 50.9
AL8G21110 Arabidopsis lyrata HOM05D006455 ORTHO05D008098 1.2e-132 477.6 513 50.7
Sed0000077 Sechium edule HOM05D006455 ORTHO05D008098 2.0e-132 476.9 500 51.6
BraA06t26837Z Brassica rapa HOM05D006455 ORTHO05D008098 3.5e-132 476.1 515 51.7
Carub.0008s0792 Capsella rubella HOM05D006455 ORTHO05D008098 1.0e-131 474.6 514 49.8
Cpa.g.sc8.27 Carica papaya HOM05D006455 ORTHO05D008098 3.9e-131 472.6 497 51.7
BcaC06g30808 Brassica carinata HOM05D006455 ORTHO05D008098 1.1e-130 471.1 513 51.5
PSO210G7796 Papaver somniferum HOM05D006455 ORTHO05D008098 4.3e-130 469.2 513 49.5
PSO210G0904 Papaver somniferum HOM05D006455 ORTHO05D008098 5.6e-130 468.8 512 49.8
BolC7t44431H Brassica oleracea HOM05D006455 ORTHO05D008098 1.2e-129 467.6 516 50.6
Lj4g0021895 Lotus japonicus HOM05D006455 ORTHO05D008098 2.8e-129 466.5 511 50.3
Aa31LG5G9090 Aethionema arabicum HOM05D006455 ORTHO05D008098 4.7e-129 465.7 508 50.2
vmacro02844 Vaccinium macrocarpon HOM05D006455 ORTHO05D008098 6.2e-129 465.3 496 52.8
C07p39110 Brassica napus HOM05D006455 ORTHO05D008098 8.0e-129 464.9 513 50.9
SHI10210 Sapria himalayana HOM05D006455 ORTHO05D008098 3.1e-128 463.0 518 50.2
ATR0743G062 Amborella trichopoda HOM05D006455 ORTHO05D008098 4.4e-127 459.1 517 47.6
Ca_30349_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 1.4e-125 454.1 514 49.4
Thhalv10003907m.g Eutrema salsugineum HOM05D006455 ORTHO05D008098 9.2e-125 451.4 490 50.2
VMungo0251G3325 Vigna mungo HOM05D006455 ORTHO05D008098 1.2e-124 451.1 516 48.3
Psat4g108080 Pisum sativum HOM05D006455 ORTHO05D008098 6.6e-123 445.3 512 46.3
Actinidia23129 Actinidia chinensis HOM05D006455 ORTHO05D008098 1.1e-122 444.5 514 50.0
Glyma.16G105200 Glycine max HOM05D006455 ORTHO05D008098 1.5e-122 444.1 491 47.7
TPR.G31161 Trifolium pratense HOM05D006455 ORTHO05D008098 3.3e-122 443.0 515 49.1
arahy.Tifrunner.gnm1.ann1.E0JCGG Arachis hypogaea HOM05D006455 ORTHO05D008098 2.1e-121 440.3 493 49.1
Manes.12G057900 Manihot esculenta HOM05D006455 ORTHO05D008098 8.1e-121 438.3 493 47.5
arahy.Tifrunner.gnm1.ann1.U8H9H1 Arachis hypogaea HOM05D006455 ORTHO05D008098 1.1e-120 438.0 494 49.0
Manes.12G058105 Manihot esculenta HOM05D006455 ORTHO05D008098 2.2e-118 430.3 493 47.5
Ca_22482_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 4.9e-118 429.1 496 49.2
Phvul.003G279900 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 4.9e-118 429.1 506 48.0
Gohir.D11G150900 Gossypium hirsutum HOM05D006455 ORTHO05D008098 1.4e-117 427.6 386 57.5
DCAR_000439 Daucus carota HOM05D006455 ORTHO05D008098 2.1e-116 423.7 344 58.7
Ah.11g050710 Amaranthus hybridus HOM05D006455 ORTHO05D008098 5.1e-115 419.1 509 46.0
Os01g0897100 Oryza sativa ssp. japonica HOM05D006455 ORTHO05D008098 3.3e-114 416.4 509 45.2
Medtr8g071270 Medicago truncatula HOM05D006455 ORTHO05D008098 2.8e-113 413.3 495 47.1
EL10Ac5g10573 Beta vulgaris HOM05D006455 ORTHO05D008098 3.8e-110 402.9 394 53.0
SEGI_16096 Sequoiadendron giganteum HOM05D006455 ORTHO05D008098 4.7e-105 386.0 525 43.6
MBI07_g34151_MAGBIO Magnolia biondii HOM05D006455 ORTHO05D008098 6.2e-105 385.6 501 46.7
Zm00001eb144730 Zea mays HOM05D006455 ORTHO05D008098 2.6e-103 380.2 492 43.9
Oeu030353.1 Olea europaea HOM05D006455 ORTHO05D008098 6.9e-96 355.5 327 58.4
HPP92_001271 Vanilla planifolia HOM05D006455 ORTHO05D008098 7.1e-93 345.5 335 50.4
Dinv07639 Davidia involucrata HOM05D006455 ORTHO05D008098 3.5e-92 343.2 393 47.3
Manes.12G058904 Manihot esculenta HOM05D006455 ORTHO05D008098 6.9e-88 328.9 270 59.6
Manes.12G057503 Manihot esculenta HOM05D006455 ORTHO05D008098 9.3e-69 265.4 198 63.6
Manes.12G057505 Manihot esculenta HOM05D006455 ORTHO05D008098 9.3e-69 265.4 198 63.6
HPP92_001254 Vanilla planifolia HOM05D006455 ORTHO05D008098 3.1e-64 250.4 219 56.6
Mapoly0109s0061 Marchantia polymorpha HOM05D006455 ORTHO05D008098 6.9e-64 249.2 544 31.4
Pp3c10_13370 Physcomitrium patens HOM05D006455 ORTHO05D008098 9.4e-61 238.8 530 32.8
SMO200G0077 Selaginella moellendorffii HOM05D006455 ORTHO05D008098 3.9e-59 233.4 497 32.4
CDE05G1197 Ceratophyllum demersum HOM05D006455 ORTHO05D008098 9.1e-56 222.2 217 50.2
PGSC0003DMG400020304 Solanum tuberosum HOM05D006455 ORTHO05D008098 7.0e-48 196.1 115 86.1
AagrBONN_evm.TU.Sc2ySwM_228.5553 Anthoceros agrestis HOM05D006455 ORTHO05D008098 1.6e-47 194.9 394 32.5
Manes.12G057504 Manihot esculenta HOM05D006455 ORTHO05D008098 2.1e-36 157.9 192 50.0
CBR_g48756 Chara braunii HOM05D006455 ORTHO05D000497 2.3e-35 154.5 207 37.7
Oeu030354.1 Olea europaea HOM05D006455 ORTHO05D008098 1.7e-30 138.3 116 59.5
Zm00001eb128100 Zea mays HOM05D006455 ORTHO05D008098 1.6e-28 131.7 142 45.8
Zm00001eb274660 Zea mays HOM05D006455 ORTHO05D008098 3.0e-27 127.5 142 45.1
Manes.12G060108 Manihot esculenta HOM05D006455 ORTHO05D008098 2.6e-26 124.4 174 46.6
EL10Ac5g10574 Beta vulgaris HOM05D006455 ORTHO05D008098 5.7e-26 123.2 115 52.2
Zm00001eb128090 Zea mays HOM05D006455 ORTHO05D008098 1.1e-21 109.0 173 36.4
Phvul.003G297266 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 3.6e-20 104.0 122 44.3
Oeu003682.1 Olea europaea HOM05D006455 ORTHO05D008098 4.9e-17 93.6 116 46.6
Cre03.g197250 Chlamydomonas reinhardtii HOM05D006455 ORTHO05D008098 1.7e-14 85.1 224 29.5
Actinidia33399 Actinidia chinensis HOM05D006455 ORTHO05D008098 4.9e-09 67.0 39 71.8


User provided reference genes

Program Settings