Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 2.2e-228 795.4 446 100.0
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 3.9e-217 758.1 444 95.7
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 2.5e-187 659.1 447 84.6
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 2.1e-186 656.0 433 85.5
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 8.8e-177 624.0 446 81.6
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 1.0e-153 547.4 449 69.9
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 2.0e-152 543.1 449 71.5
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 7.5e-152 541.2 448 70.1
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 7.5e-152 541.2 448 70.1
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 2.0e-149 533.1 450 69.1
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 2.0e-149 533.1 447 68.9
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 3.9e-148 528.9 446 68.6
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 3.9e-148 528.9 465 66.9
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.7e-146 521.9 445 69.2
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 8.0e-146 521.2 444 68.5
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.1e-145 519.2 445 68.8
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 8.9e-145 517.7 453 66.4
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 1.2e-144 517.3 445 68.1
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 2.0e-144 516.5 449 66.8
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 2.6e-144 516.2 447 68.2
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 3.4e-144 515.8 448 67.0
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.4e-144 515.4 445 68.8
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 4.4e-144 515.4 447 67.8
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 4.4e-144 515.4 445 68.5
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 4.4e-144 515.4 446 65.9
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 5.8e-144 515.0 446 67.5
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 1.7e-143 513.5 436 69.0
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 1.7e-143 513.5 447 66.4
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 2.9e-143 512.7 446 67.0
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 3.7e-143 512.3 450 69.6
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 7.0e-142 508.1 426 69.7
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 2.1e-141 506.5 447 65.8
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 2.7e-141 506.1 447 65.8
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 5.1e-140 501.9 448 66.5
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 6.6e-140 501.5 437 68.2
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 1.1e-139 500.7 447 66.2
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 9.5e-139 497.7 450 65.3
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 3.1e-137 492.7 455 64.8
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 5.8e-136 488.4 446 63.5
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 1.3e-135 487.3 446 62.3
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.9e-134 483.4 423 67.6
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 3.9e-132 475.7 453 64.5
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 6.6e-132 474.9 446 63.7
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 1.1e-131 474.2 447 61.1
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 1.9e-131 473.4 446 61.7
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 1.9e-131 473.4 446 63.2
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 3.3e-131 472.6 445 61.3
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 9.5e-131 471.1 445 62.0
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 2.1e-130 469.9 442 61.3
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 6.2e-130 468.4 458 60.5
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 8.1e-130 468.0 447 61.1
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 8.1e-130 468.0 448 60.9
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 1.1e-129 467.6 443 60.0
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 1.8e-129 466.8 445 60.4
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 3.1e-129 466.1 453 62.7
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 6.8e-129 464.9 452 61.1
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 1.2e-128 464.2 453 61.1
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 3.4e-128 462.6 446 61.2
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 9.9e-128 461.1 447 59.7
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 9.9e-128 461.1 448 60.5
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 1.9e-126 456.8 457 61.7
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 4.2e-126 455.7 444 60.4
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 7.1e-126 454.9 441 59.6
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 7.1e-126 454.9 446 60.8
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 1.2e-125 454.1 442 60.4
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 2.7e-125 453.0 459 59.5
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 2.7e-125 453.0 447 60.6
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 4.6e-125 452.2 465 57.2
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 4.6e-125 452.2 449 60.1
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 6.0e-125 451.8 448 59.8
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 5.1e-124 448.7 447 60.2
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 1.1e-123 447.6 444 59.7
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 1.1e-123 447.6 446 60.1
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 3.3e-123 446.0 446 58.5
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 7.3e-123 444.9 446 59.2
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 9.6e-123 444.5 444 59.2
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 2.8e-122 443.0 446 60.8
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 4.8e-122 442.2 444 59.0
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 4.8e-122 442.2 448 60.7
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 8.1e-122 441.4 436 61.5
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 8.1e-122 441.4 436 61.5
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 9.0e-121 438.0 388 67.5
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 2.0e-120 436.8 449 58.6
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 4.9e-119 432.2 446 57.8
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 8.4e-119 431.4 491 55.2
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 1.1e-118 431.0 449 60.1
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 6.0e-117 425.2 476 56.1
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 2.3e-116 423.3 447 58.6
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 3.0e-116 422.9 448 57.4
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 5.6e-115 418.7 420 57.4
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 1.5e-112 410.6 448 55.6
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 5.4e-110 402.1 424 57.3
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 1.5e-107 394.0 448 55.8
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 3.3e-107 392.9 446 55.6
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.3e-107 392.5 326 70.2
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 1.5e-96 357.5 461 49.5
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 2.0e-96 357.1 444 51.8
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 3.8e-95 352.8 380 57.1
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 3.8e-95 352.8 325 65.5
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 1.3e-90 337.8 366 55.5
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 2.8e-90 336.7 449 47.2
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.3e-90 335.5 401 54.6
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 6.9e-89 332.0 429 49.0
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 2.9e-87 326.6 390 52.6
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 8.5e-87 325.1 464 47.8
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 2.5e-86 323.6 460 46.7
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 1.2e-85 321.2 426 47.4
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 7.4e-83 312.0 417 50.1
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 2.0e-80 303.9 278 64.7
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 1.0e-76 291.6 348 52.6
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 1.2e-69 268.1 271 57.9
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 2.0e-67 260.8 231 64.9
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 1.9e-62 244.2 337 49.0
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 2.1e-61 240.7 207 69.6
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 2.3e-60 237.3 246 57.7
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 5.7e-59 232.6 275 56.0
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 1.1e-57 228.4 371 45.8
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 2.3e-52 210.7 249 56.2
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.3e-50 202.2 206 59.2
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 9.1e-49 198.7 198 56.1
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 1.1e-46 191.8 368 38.0
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 2.1e-45 187.6 455 34.5
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 3.6e-45 186.8 375 35.5
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 9.2e-41 172.2 149 67.1
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.8e-40 169.1 197 54.3
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 2.9e-39 167.2 175 58.9
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 6.6e-39 166.0 269 42.8
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 1.1e-33 148.7 162 59.3
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 1.4e-33 148.3 466 30.3
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 2.4e-33 147.5 129 67.4
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 7.3e-30 136.0 133 60.2
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.8e-28 131.3 180 50.6
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 6.4e-26 122.9 204 43.6
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 5.6e-22 109.8 147 51.7
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 6.2e-21 106.3 92 65.2
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 3.4e-19 100.5 67 83.6
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 1.3e-15 88.6 95 55.8
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 6.6e-15 86.3 60 75.0
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 1.9e-14 84.7 107 54.2
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 4.7e-13 80.1 190 40.0
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 6.0e-08 63.2 37 81.1
Cre01.g043400 Chlamydomonas reinhardtii HOM05D005278 ORTHO05D006500 5.6e-06 56.6 183 28.4


User provided reference genes

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