Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 2.5e-153 545.8 359 100.0
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 1.0e-103 380.9 359 66.0
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 5.9e-99 365.2 364 65.4
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 2.0e-94 350.1 363 63.4
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 2.6e-94 349.7 366 63.1
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 3.7e-93 345.9 365 63.0
Peaxi162Scf00064g00737 Petunia axillaris HOM05D004095 ORTHO05D003197 3.5e-43 179.9 341 44.9
CAN.G1517.6 Capsicum annuum HOM05D004095 ORTHO05D003197 1.8e-42 177.6 371 43.4
PGSC0003DMG400029333 Solanum tuberosum HOM05D004095 ORTHO05D003197 2.8e-40 170.2 367 40.9
Peaxi162Scf00045g02255 Petunia axillaris HOM05D004095 ORTHO05D003197 3.2e-36 156.8 158 59.5
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 2.7e-35 153.7 378 38.9
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 3.7e-32 143.3 392 41.1
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 2.0e-30 137.5 386 37.0
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 7.7e-30 135.6 383 36.0
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.3e-29 134.8 383 35.0
MSTRG.1174 Avicennia marina HOM05D004095 ORTHO05D003197 1.4e-28 131.3 379 38.3
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.9e-28 131.0 221 42.1
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 2.1e-27 127.5 386 37.8
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 1.8e-26 124.4 372 34.9
MSTRG.22345 Avicennia marina HOM05D004095 ORTHO05D003197 1.1e-25 121.7 370 38.1
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 4.3e-25 119.8 226 39.8
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 1.7e-24 117.9 374 32.1
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 3.7e-24 116.7 230 39.1
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 3.7e-24 116.7 395 33.7
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 4.1e-23 113.2 363 33.9
Sc15g0004790 Simmondsia chinensis HOM05D004095 ORTHO05D003197 9.1e-23 112.1 379 33.0
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 2.0e-22 110.9 378 36.8
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 2.6e-22 110.5 372 33.9
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 2.6e-22 110.5 397 35.8
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 2.6e-22 110.5 398 34.4
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 5.9e-22 109.4 412 33.3
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 7.7e-22 109.0 376 34.3
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 1.0e-21 108.6 254 35.4
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.3e-21 108.2 373 39.7
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 2.2e-21 107.5 369 33.6
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 2.9e-21 107.1 404 34.2
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 5.0e-21 106.3 366 32.5
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 6.5e-21 105.9 224 38.8
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 8.5e-21 105.5 369 33.9
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 8.5e-21 105.5 289 33.2
AUR62041467 Chenopodium quinoa HOM05D004095 ORTHO05D003197 1.1e-20 105.1 252 34.1
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 1.4e-20 104.8 375 32.5
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 4.2e-20 103.2 257 34.6
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 9.4e-20 102.1 371 33.7
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 9.4e-20 102.1 234 35.9
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 2.1e-19 100.9 365 32.6
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 2.7e-19 100.5 255 33.7
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 3.6e-19 100.1 380 37.4
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 4.7e-19 99.8 373 41.8
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 6.1e-19 99.4 377 34.7
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 6.1e-19 99.4 373 42.1
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 1.0e-18 98.6 374 33.2
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 6.7e-18 95.9 219 34.7
Lj4A799T84 Lonicera japonica HOM05D004095 ORTHO05D003197 8.8e-18 95.5 359 34.0
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 8.8e-18 95.5 369 32.2
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 1.1e-17 95.1 221 33.0
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 1.1e-17 95.1 404 32.2
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 1.5e-17 94.7 238 35.3
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 1.5e-17 94.7 370 31.1
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 2.6e-17 94.0 372 33.9
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 2.6e-17 94.0 234 32.9
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 3.3e-17 93.6 376 28.7
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 4.4e-17 93.2 229 34.9
Thecc.02G059700 Theobroma cacao HOM05D015147 ORTHO05D003197 5.7e-17 92.8 120 40.8
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 1.3e-16 91.7 391 29.9
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 1.7e-16 91.3 367 26.7
DCAR_009498 Daucus carota HOM05D004095 ORTHO05D003197 2.2e-16 90.9 422 31.0
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 4.8e-16 89.7 376 27.9
Cfa005239 Carpinus fangiana HOM05D004095 ORTHO05D003197 6.3e-16 89.4 227 33.9
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 1.1e-15 88.6 371 29.9
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 4.1e-15 86.7 369 28.2
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 5.3e-15 86.3 219 33.3
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 5.3e-15 86.3 219 33.3
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 7.0e-15 85.9 233 32.2
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 9.1e-15 85.5 361 29.9
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 9.1e-15 85.5 226 34.1
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 9.1e-15 85.5 367 31.1
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 1.2e-14 85.1 362 31.2
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 2.0e-14 84.3 253 30.8
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 2.0e-14 84.3 234 32.9
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 2.6e-14 84.0 373 31.1
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 4.5e-14 83.2 371 29.1
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 5.9e-14 82.8 411 29.7
Actinidia17001 Actinidia chinensis HOM05D004095 ORTHO05D003197 5.9e-14 82.8 225 40.4
Gorai.008G131100 Gossypium raimondii HOM05D004095 ORTHO05D003197 7.7e-14 82.4 220 35.0
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 7.7e-14 82.4 404 29.2
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 1.0e-13 82.0 387 28.7
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.2e-13 80.9 220 34.1
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 2.9e-13 80.5 366 32.2
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 5.0e-13 79.7 371 28.3
C01p03060 Brassica napus HOM05D004095 ORTHO05D003197 1.5e-12 78.2 372 29.0
Thecc.02G060400 Theobroma cacao HOM05D015147 ORTHO05D003197 1.5e-12 78.2 92 41.3
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 2.5e-12 77.4 222 33.3
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 3.2e-12 77.0 223 32.3
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 4.2e-12 76.6 224 29.9
Prupe.1G362500 Prunus persica HOM05D004095 ORTHO05D003197 9.4e-12 75.5 372 26.3
Lsat_1_v5_gn_8_29800 Lactuca sativa HOM05D004095 ORTHO05D003197 1.2e-11 75.1 457 29.5
QL11p050200 Quercus lobata HOM05D004095 ORTHO05D003197 1.2e-11 75.1 381 30.4
Actinidia15439 Actinidia chinensis HOM05D004095 ORTHO05D003197 1.6e-11 74.7 242 33.5
Duzib052G0919 Durio zibethinus HOM05D015147 ORTHO05D003197 1.6e-11 74.7 99 38.4
Aqoxy6G02168 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 2.1e-11 74.3 218 30.3
BolC1t00292H Brassica oleracea HOM05D004095 ORTHO05D003197 2.1e-11 74.3 372 29.8
RcHm_v2.0_Chr6g0303321 Rosa chinensis HOM05D004095 ORTHO05D003197 2.1e-11 74.3 219 33.3
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 3.6e-11 73.6 221 31.7
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 4.7e-11 73.2 231 31.6
TAR625G0988 Trochodendron aralioides HOM05D004095 ORTHO05D003197 4.7e-11 73.2 201 30.8
Haze_02143 Corylus avellana HOM05D015147 ORTHO05D003197 6.1e-11 72.8 222 31.5
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 8.0e-11 72.4 228 30.7
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 8.0e-11 72.4 388 29.9
BcaNung00778 Brassica carinata HOM05D004095 ORTHO05D003197 1.8e-10 71.2 231 27.7
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 3.0e-10 70.5 83 41.0
A07p41430 Brassica napus HOM05D008819 ORTHO05D003197 3.9e-10 70.1 216 31.0
HanXRQChr12g0366821 Helianthus annuus HOM05D004095 ORTHO05D003197 3.9e-10 70.1 439 27.8
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 3.9e-10 70.1 368 27.4
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 5.2e-10 69.7 396 28.8
COL.COLO4_17333 Corchorus olitorius HOM05D015147 ORTHO05D003197 5.2e-10 69.7 98 32.7
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 5.2e-10 69.7 222 31.5
Lj1g0024400 Lotus japonicus HOM05D004095 ORTHO05D003197 6.7e-10 69.3 83 41.0
GSVIVG01024025001 Vitis vinifera HOM05D004095 ORTHO05D003197 6.7e-10 69.3 232 30.6
PGR119G1825 Punica granatum HOM05D004095 ORTHO05D003197 1.1e-09 68.6 113 35.4
Migut.N03174 Erythranthe guttata HOM05D004095 ORTHO05D003197 2.0e-09 67.8 220 29.1
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 3.3e-09 67.0 230 27.4
Cpa.g.sc26.299 Carica papaya HOM05D004095 ORTHO05D003197 3.3e-09 67.0 306 27.5
CANSAT25G2395 Cannabis sativa HOM05D004095 ORTHO05D003197 4.4e-09 66.6 418 30.6
Nitab4.5_0001944g0070 Nicotiana tabacum HOM05D004095 ORTHO05D003197 4.4e-09 66.6 188 32.4
BraA09t36805Z Brassica rapa HOM05D004095 ORTHO05D003197 5.7e-09 66.2 92 42.4
QL02p012206 Quercus lobata HOM05D004095 ORTHO05D003197 7.4e-09 65.9 337 24.3
Eucgr.H00956 Eucalyptus grandis HOM05D066110 ORTHO05D003197 1.3e-08 65.1 227 30.4
A09p11580 Brassica napus HOM05D004095 ORTHO05D003197 1.7e-08 64.7 91 40.7
Prupe.7G171900 Prunus persica HOM05D004095 ORTHO05D003197 1.7e-08 64.7 437 28.6
Carub.0003s3193 Capsella rubella HOM05D004095 ORTHO05D003197 2.2e-08 64.3 93 39.8
Migut.O00908 Erythranthe guttata HOM05D004095 ORTHO05D003197 2.2e-08 64.3 220 28.6
BcaB07g31703 Brassica carinata HOM05D004095 ORTHO05D003197 2.8e-08 63.9 369 29.5
C09p13630 Brassica napus HOM05D004095 ORTHO05D003197 2.8e-08 63.9 91 41.8
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 3.7e-08 63.5 301 27.2
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.7e-08 63.5 186 28.5
FAN19G1292 Fragaria x ananassa HOM05D024588 ORTHO05D003197 4.8e-08 63.2 82 40.2
MD02G1126500 Malus domestica HOM05D004095 ORTHO05D003197 4.8e-08 63.2 90 41.1
BcaC04g22942 Brassica carinata HOM05D004095 ORTHO05D003197 6.3e-08 62.8 91 40.7
A03p63990 Brassica napus HOM05D004095 ORTHO05D003197 6.3e-08 62.8 397 24.7
Medtr1g025620 Medicago truncatula HOM05D013708 ORTHO05D003197 6.3e-08 62.8 261 29.5
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 8.2e-08 62.4 220 28.6
BcaC06g36322 Brassica carinata HOM05D004095 ORTHO05D003197 1.1e-07 62.0 98 38.8
C07p05400 Brassica napus HOM05D004095 ORTHO05D003197 1.1e-07 62.0 98 38.8
Sp7g33720 Schrenkiella parvula HOM05D004095 ORTHO05D003197 1.1e-07 62.0 225 28.4
AT2G17787 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 1.4e-07 61.6 171 31.6
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 1.4e-07 61.6 213 31.0
BolC6t40021H Brassica oleracea HOM05D008819 ORTHO05D003197 1.4e-07 61.6 223 29.1
CARHR069410 Cardamine hirsuta HOM05D008819 ORTHO05D003197 1.8e-07 61.2 203 32.5
Dinv39538 Davidia involucrata HOM05D004095 ORTHO05D003197 1.8e-07 61.2 198 39.9
BcaC08g47318 Brassica carinata HOM05D008819 ORTHO05D003197 2.4e-07 60.8 216 27.3
A07p03170 Brassica napus HOM05D004095 ORTHO05D003197 2.4e-07 60.8 387 26.9
HPP92_007327 Vanilla planifolia HOM05D004095 ORTHO05D003197 3.1e-07 60.5 238 29.8
AT1G75860 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 4.1e-07 60.1 207 31.4
Thhalv10019693m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 4.1e-07 60.1 216 29.2
C06p49830 Brassica napus HOM05D008819 ORTHO05D003197 5.3e-07 59.7 216 28.2
BolC7t40940H Brassica oleracea HOM05D004095 ORTHO05D003197 5.3e-07 59.7 98 37.8
CANSAT11G2253 Cannabis sativa HOM05D004095 ORTHO05D003197 5.3e-07 59.7 97 39.2
Thhalv10027062m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 5.3e-07 59.7 246 29.7
Glyma.17G259300 Glycine max HOM05D013708 ORTHO05D003197 5.3e-07 59.7 81 43.2
ECA233G2314 Erigeron canadensis HOM05D004095 ORTHO05D003197 7.0e-07 59.3 482 28.4
AL3G50810 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 1.2e-06 58.5 133 33.8
BraA03t15466Z Brassica rapa HOM05D004095 ORTHO05D003197 1.2e-06 58.5 397 24.2
BraA07t28113Z Brassica rapa HOM05D004095 ORTHO05D003197 1.6e-06 58.2 385 26.0
Glyma.14G220400 Glycine max HOM05D013708 ORTHO05D003197 1.6e-06 58.2 85 41.2
A01p02760 Brassica napus HOM05D004095 ORTHO05D003197 2.0e-06 57.8 229 24.9
Carub.0002s2277 Capsella rubella HOM05D008819 ORTHO05D003197 2.0e-06 57.8 212 30.2
CARHR108180 Cardamine hirsuta HOM05D004095 ORTHO05D003197 2.0e-06 57.8 361 24.9
RcHm_v2.0_Chr2g0098961 Rosa chinensis HOM05D024588 ORTHO05D003197 2.0e-06 57.8 84 38.1
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 2.0e-06 57.8 228 28.1
Thhalv10022767m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 2.6e-06 57.4 82 37.8
SGA_v2.0_scaffold19G08554 Striga asiatica HOM05D004095 ORTHO05D003197 2.6e-06 57.4 368 28.5
HanXRQChr13g0387151 Helianthus annuus HOM05D004095 ORTHO05D003197 3.5e-06 57.0 249 35.3
Ah.00g000350 Amaranthus hybridus HOM05D004095 ORTHO05D003197 4.5e-06 56.6 254 37.4
AL2G35870 Arabidopsis lyrata HOM05D008819 ORTHO05D003197 4.5e-06 56.6 229 30.1
C07p23350 Brassica napus HOM05D008819 ORTHO05D003197 4.5e-06 56.6 223 27.4
CiPaw.06G122100 Carya illinoinensis HOM05D029580 ORTHO05D028671 4.5e-06 56.6 332 26.8
TPR.G26385 Trifolium pratense HOM05D013708 ORTHO05D003197 4.5e-06 56.6 127 32.3
BcaNung03339 Brassica carinata HOM05D008819 ORTHO05D003197 5.9e-06 56.2 223 27.4
MBI05_g23379_MAGBIO Magnolia biondii HOM05D004095 ORTHO05D003197 5.9e-06 56.2 78 39.7


User provided reference genes

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