Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.3e-232 808.5 407 100.0
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 9.7e-223 776.5 407 96.3
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 4.4e-215 751.1 403 93.5
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 7.0e-213 743.8 407 93.4
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 5.2e-184 647.9 407 81.1
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 2.6e-183 645.6 407 81.3
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 2.4e-173 612.5 413 78.0
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 2.5e-170 602.4 351 85.2
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 2.7e-140 502.7 409 64.3
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 2.7e-132 476.1 406 60.6
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 7.9e-132 474.6 358 66.2
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.8e-131 473.4 410 59.5
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 3.9e-131 472.2 409 60.4
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 2.8e-129 466.1 409 59.2
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 1.5e-127 460.3 410 58.0
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 1.5e-127 460.3 326 66.6
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 3.4e-127 459.1 333 65.8
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 1.3e-126 457.2 345 64.1
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 1.6e-124 450.3 409 57.9
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 3.5e-124 449.1 343 64.1
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 7.9e-124 448.0 420 56.9
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 9.7e-122 441.0 327 65.7
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 2.2e-121 439.9 411 57.7
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 3.7e-121 439.1 340 62.6
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 8.2e-121 438.0 324 64.2
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 1.1e-120 437.6 327 65.4
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 2.4e-120 436.4 360 59.7
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.0e-119 433.3 335 64.2
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 5.9e-119 431.8 408 54.2
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 1.0e-118 431.0 404 55.2
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 1.7e-118 430.3 357 59.7
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 2.2e-118 429.9 342 60.5
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 6.5e-118 428.3 320 63.8
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 6.5e-118 428.3 322 62.7
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 1.1e-117 427.6 404 55.2
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 2.5e-117 426.4 306 64.1
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 4.2e-117 425.6 321 62.3
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 7.2e-117 424.9 408 55.1
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 9.4e-117 424.5 410 52.7
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 1.6e-116 423.7 393 53.4
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.6e-116 422.5 353 60.9
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 6.1e-116 421.8 319 62.7
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 1.4e-115 420.6 407 54.8
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 1.4e-115 420.6 403 54.3
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 1.4e-115 420.6 326 63.5
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.3e-115 419.9 411 51.8
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 6.7e-115 418.3 320 61.6
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 1.1e-114 417.5 340 58.8
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 5.7e-114 415.2 324 61.1
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 5.7e-114 415.2 404 53.5
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 5.7e-114 415.2 348 59.2
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 2.8e-113 412.9 313 62.9
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 3.7e-113 412.5 408 50.7
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 4.8e-113 412.1 416 52.4
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 8.2e-113 411.4 407 54.3
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 5.3e-112 408.7 373 56.0
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 1.2e-111 407.5 409 51.3
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 1.2e-111 407.5 302 62.3
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 2.0e-111 406.8 415 51.8
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 3.4e-111 406.0 473 49.9
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 5.9e-111 405.2 367 53.1
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 1.3e-110 404.1 396 51.8
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 2.2e-110 403.3 328 57.6
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 2.9e-110 402.9 404 52.5
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 5.0e-110 402.1 410 50.5
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 8.5e-110 401.4 328 56.7
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 8.5e-110 401.4 328 57.0
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 2.5e-109 399.8 381 52.5
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 4.2e-109 399.1 393 54.5
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 9.4e-109 397.9 367 52.6
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 7.9e-108 394.8 328 56.1
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 7.9e-108 394.8 328 56.1
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 1.4e-107 394.0 328 55.8
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 1.8e-107 393.7 307 59.9
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 3.0e-107 392.9 326 55.2
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 3.0e-107 392.9 328 55.8
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 5.1e-107 392.1 331 55.3
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 8.8e-107 391.3 325 56.0
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 1.5e-106 390.6 397 51.4
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 2.0e-106 390.2 331 55.0
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 3.3e-106 389.4 309 57.6
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 7.4e-106 388.3 320 60.0
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 7.4e-106 388.3 338 61.2
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 1.3e-105 387.5 399 50.1
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 2.8e-105 386.3 325 54.8
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 4.8e-105 385.6 365 51.8
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 1.4e-104 384.0 320 58.1
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.8e-104 383.6 332 58.1
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 5.3e-104 382.1 413 47.5
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 1.5e-103 380.6 378 48.9
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.7e-102 377.1 336 58.6
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 3.2e-101 372.9 404 49.0
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 1.4e-99 367.5 371 48.8
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 1.8e-99 367.1 314 61.5
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 1.3e-97 360.9 322 54.3
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.7e-97 360.5 418 48.3
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 4.8e-97 359.0 323 54.5
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 6.3e-97 358.6 318 54.4
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 1.2e-95 354.4 315 54.9
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 3.8e-94 349.4 324 53.7
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 1.8e-91 340.5 311 54.0
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 1.8e-91 340.5 394 48.0
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 4.1e-88 329.3 331 48.6
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 1.7e-86 323.9 275 60.0
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 1.0e-78 298.1 343 46.4
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 9.5e-77 291.6 227 59.9
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 3.6e-76 289.7 257 55.6
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.4e-75 287.7 230 57.4
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 8.3e-73 278.5 207 63.3
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 3.2e-72 276.6 283 51.9
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 1.2e-71 274.6 284 51.8
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 8.9e-67 258.5 354 46.0
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 1.5e-66 257.7 371 42.0
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 1.4e-64 251.1 329 43.5
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 5.2e-51 206.1 227 48.9
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 1.0e-46 191.8 266 40.2
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 1.5e-45 188.0 153 69.3
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.4e-40 170.6 133 60.2
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 8.1e-36 155.6 150 48.7
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 5.3e-35 152.9 122 56.6
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 6.9e-35 152.5 320 28.1
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 1.3e-33 148.3 179 40.2
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 1.9e-32 144.4 321 30.2
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 5.4e-32 142.9 194 41.8
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 9.3e-32 142.1 125 61.6
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 2.6e-26 124.0 150 40.7
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 2.2e-25 120.9 76 72.4
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 8.4e-25 119.0 230 31.7
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 4.6e-23 113.2 91 57.1
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 3.0e-22 110.5 316 25.3
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 5.1e-22 109.8 69 69.6
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 5.6e-21 106.3 143 44.8
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 4.8e-20 103.2 93 49.5
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 1.4e-19 101.7 247 27.1
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.9e-16 91.3 88 46.6
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 3.9e-14 83.6 314 24.2
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.5e-13 81.6 70 57.1
Hund28065 Selenicereus undatus HOM05D000003 ORTHO05D000006 1.2e-07 62.0 112 34.8
Hund28074 Selenicereus undatus HOM05D000003 ORTHO05D000006 1.2e-07 62.0 112 34.8
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.3e-06 58.5 43 55.8


User provided reference genes

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