Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006472g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 1.7e-302 1042.0 557 100.0
Nitab4.5_0021689g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 8.2e-281 969.9 651 81.6
Sopen09g014130 Solanum pennellii HOM05D006922 ORTHO05D008564 1.8e-259 899.0 550 82.7
Solyc09g031610.4 Solanum lycopersicum HOM05D006922 ORTHO05D008564 5.7e-258 894.0 551 81.3
Peaxi162Scf00116g00214 Petunia axillaris HOM05D006922 ORTHO05D008564 4.5e-247 857.8 572 81.8
Rhsim13G0069900 Rhododendron simsii HOM05D006922 ORTHO05D008564 1.0e-238 830.1 557 75.6
vmacro02966 Vaccinium macrocarpon HOM05D006922 ORTHO05D008564 1.7e-238 829.3 523 80.1
Cc01_g14160 Coffea canephora HOM05D006922 ORTHO05D008564 2.9e-238 828.6 553 78.5
CSS0043924 Camellia sinensis var. sinensis HOM05D006922 ORTHO05D008564 7.5e-234 813.9 568 72.5
QL01p038111 Quercus lobata HOM05D006922 ORTHO05D008564 7.5e-234 813.9 556 71.9
GSVIVG01024745001 Vitis vinifera HOM05D006922 ORTHO05D008564 4.9e-233 811.2 562 72.8
TAR636G2664 Trochodendron aralioides HOM05D006922 ORTHO05D008564 1.4e-232 809.7 558 71.0
CiPaw.13G078100 Carya illinoinensis HOM05D006922 ORTHO05D008564 1.8e-232 809.3 558 74.0
Actinidia25162 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.3e-230 803.1 520 73.3
Gorai.013G260300 Gossypium raimondii HOM05D006922 ORTHO05D008564 2.9e-230 802.0 554 75.3
Gohir.D13G229600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 8.6e-230 800.4 554 74.4
Gohir.A13G224600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 1.5e-229 799.7 554 73.6
Thecc.09G302300 Theobroma cacao HOM05D006922 ORTHO05D008564 1.5e-229 799.7 557 72.9
TWI75G0327 Tripterygium wilfordii HOM05D006922 ORTHO05D008564 3.4e-226 788.5 560 70.7
ClCG02G019570 Citrullus lanatus HOM05D006922 ORTHO05D008564 8.3e-225 783.9 521 74.5
CsaV3_6G016240 Cucumis sativus L. HOM05D006922 ORTHO05D008564 1.1e-224 783.5 518 73.6
Aqoxy4G02590 Aquilegia oxysepala HOM05D006922 ORTHO05D008564 1.9e-224 782.7 562 72.2
PGR102G2313 Punica granatum HOM05D006922 ORTHO05D008564 3.2e-224 781.9 562 70.3
RcHm_v2.0_Chr5g0069361 Rosa chinensis HOM05D006922 ORTHO05D008564 1.2e-223 780.0 553 72.9
Atru.chr3.4225 Acer truncatum HOM05D006922 ORTHO05D008564 1.6e-223 779.6 522 75.5
FvH4_3g38500 Fragaria vesca HOM05D006922 ORTHO05D008564 2.0e-223 779.2 557 69.5
HanXRQChr01g0011191 Helianthus annuus HOM05D006922 ORTHO05D008564 1.0e-222 776.9 518 74.3
Duzib170G0653 Durio zibethinus HOM05D006922 ORTHO05D008564 1.3e-222 776.5 558 74.2
Cfa011691 Carpinus fangiana HOM05D006922 ORTHO05D008564 1.7e-222 776.2 559 73.5
Manes.02G119900 Manihot esculenta HOM05D006922 ORTHO05D008564 1.7e-222 776.2 566 70.8
MD11G1075200 Malus domestica HOM05D006922 ORTHO05D008564 5.0e-222 774.6 557 70.7
Nn2g13696 Nelumbo nucifera HOM05D006922 ORTHO05D008564 5.6e-221 771.2 553 67.3
Haze_24310 Corylus avellana HOM05D006922 ORTHO05D008564 1.2e-220 770.0 630 67.6
Haze_24317 Corylus avellana HOM05D006922 ORTHO05D008564 1.2e-220 770.0 630 67.6
Lsat_1_v5_gn_5_171361 Lactuca sativa HOM05D006922 ORTHO05D008564 1.2e-220 770.0 518 73.7
FAN25G0993 Fragaria x ananassa HOM05D006922 ORTHO05D008564 4.7e-220 768.1 576 66.3
VMungo0647G1020 Vigna mungo HOM05D006922 ORTHO05D008564 6.2e-220 767.7 555 69.5
Sed0026257 Sechium edule HOM05D006922 ORTHO05D008564 2.3e-219 765.8 559 67.1
PSO384G3055 Papaver somniferum HOM05D006922 ORTHO05D008564 4.0e-219 765.0 525 69.5
PSO339G4985 Papaver somniferum HOM05D006922 ORTHO05D008564 5.2e-219 764.6 525 73.1
CANSAT54G2041 Cannabis sativa HOM05D006922 ORTHO05D008564 1.2e-218 763.5 555 70.1
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 2.6e-218 762.3 546 67.9
Potri.001G251000 Populus trichocarpa HOM05D006922 ORTHO05D008564 2.6e-218 762.3 558 70.3
SGA_v2.0_scaffold146G36139 Striga asiatica HOM05D006922 ORTHO05D008564 7.5e-218 760.8 557 67.5
MSTRG.17876 Avicennia marina HOM05D006922 ORTHO05D008564 8.3e-217 757.3 553 67.5
Hund18850 Selenicereus undatus HOM05D006922 ORTHO05D008564 1.1e-216 756.9 551 68.6
Glyma.14G193200 Glycine max HOM05D006922 ORTHO05D008564 1.9e-216 756.1 561 67.4
Cpa.g.sc112.28 Carica papaya HOM05D006922 ORTHO05D008564 3.2e-216 755.4 513 69.6
Lalb_Chr17g0345061 Lupinus albus HOM05D006922 ORTHO05D008564 2.1e-215 752.7 516 71.1
Glyma.02G226300 Glycine max HOM05D006922 ORTHO05D008564 2.7e-215 752.3 561 67.4
Sabra16G0152600 Salix brachista HOM05D006922 ORTHO05D008564 7.8e-215 750.7 555 74.4
ECA248G0600 Erigeron canadensis HOM05D006922 ORTHO05D008564 1.3e-214 750.0 514 69.3
Migut.N00796 Erythranthe guttata HOM05D006922 ORTHO05D008564 3.6e-212 741.9 562 69.4
Phvul.008G261700 Phaseolus vulgaris HOM05D006922 ORTHO05D008564 1.4e-211 740.0 564 66.1
Ah.08g221140 Amaranthus hybridus HOM05D006922 ORTHO05D008564 3.1e-211 738.8 550 72.0
Eucgr.B02258 Eucalyptus grandis HOM05D006922 ORTHO05D008564 5.2e-211 738.0 561 67.9
Medtr5g070310 Medicago truncatula HOM05D006922 ORTHO05D008564 6.8e-211 737.6 562 66.5
Psat2g058840 Pisum sativum HOM05D006922 ORTHO05D008564 2.0e-210 736.1 514 69.6
arahy.Tifrunner.gnm1.ann1.GN6H4S Arachis hypogaea HOM05D006922 ORTHO05D008564 3.4e-210 735.3 573 65.3
arahy.Tifrunner.gnm1.ann1.TP1S59 Arachis hypogaea HOM05D006922 ORTHO05D008564 7.6e-210 734.2 567 67.5
Dinv14441 Davidia involucrata HOM05D006922 ORTHO05D008564 2.9e-209 732.3 558 68.5
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 1.4e-208 729.9 487 78.0
THA.LOC104814912 Tarenaya hassleriana HOM05D006922 ORTHO05D008564 1.2e-207 726.9 505 68.7
TPR.G5774 Trifolium pratense HOM05D006922 ORTHO05D008564 1.2e-207 726.9 564 65.2
Sc12g0000700 Simmondsia chinensis HOM05D006922 ORTHO05D008564 3.0e-206 722.2 429 77.4
ATR0618G165 Amborella trichopoda HOM05D006922 ORTHO05D008564 4.3e-205 718.4 515 68.9
DCAR_007371 Daucus carota HOM05D006922 ORTHO05D008564 2.4e-203 712.6 446 74.2
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 6.8e-203 711.1 498 73.5
FAN21G2294 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.3e-201 706.8 579 64.1
Sp6g20450 Schrenkiella parvula HOM05D006922 ORTHO05D008564 2.4e-200 702.6 557 63.2
EL10Ac7g16162 Beta vulgaris HOM05D006922 ORTHO05D008564 9.3e-200 700.7 547 64.0
MELO3C025853.2 Cucumis melo HOM05D006922 ORTHO05D008564 3.0e-198 695.7 420 76.2
Aa31LG11G520 Aethionema arabicum HOM05D006922 ORTHO05D008564 5.1e-198 694.9 490 69.0
Carub.0008s1938 Capsella rubella HOM05D006922 ORTHO05D008564 5.1e-198 694.9 497 68.8
CDE04G0365 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 8.7e-198 694.1 492 66.5
AUR62020125 Chenopodium quinoa HOM05D006922 ORTHO05D008564 3.8e-193 678.7 517 63.8
VMungo1080G0717 Vigna mungo HOM05D006922 ORTHO05D008564 6.4e-193 677.9 482 65.8
A02p07550 Brassica napus HOM05D006922 ORTHO05D008564 5.4e-192 674.9 486 67.7
Thhalv10013126m.g Eutrema salsugineum HOM05D006922 ORTHO05D008564 6.0e-191 671.4 563 63.1
BraA02t05832Z Brassica rapa HOM05D006922 ORTHO05D008564 1.0e-190 670.6 486 67.3
LjContig00155g0013001 Lotus japonicus HOM05D006922 ORTHO05D008564 1.3e-190 670.2 563 60.6
C02p13110 Brassica napus HOM05D006922 ORTHO05D008564 2.3e-190 669.5 496 66.9
BolC2t07428H Brassica oleracea HOM05D006922 ORTHO05D008564 2.3e-190 669.5 496 66.9
Os01g0141700 Oryza sativa ssp. japonica HOM05D006922 ORTHO05D008564 6.6e-190 667.9 443 68.2
HPP92_019886 Vanilla planifolia HOM05D006922 ORTHO05D008564 8.7e-190 667.5 500 64.4
AUR62001652 Chenopodium quinoa HOM05D006922 ORTHO05D008564 9.6e-189 664.1 561 62.7
BcaB05g22449 Brassica carinata HOM05D006922 ORTHO05D008564 2.8e-188 662.5 435 70.3
BcaC03g14075 Brassica carinata HOM05D006922 ORTHO05D008564 3.6e-188 662.1 435 70.3
AL8G35040 Arabidopsis lyrata HOM05D006922 ORTHO05D008564 9.0e-187 657.5 497 65.6
AT5G58760 Arabidopsis thaliana HOM05D006922 ORTHO05D008564 3.4e-186 655.6 501 66.7
CARHR272670 Cardamine hirsuta HOM05D006922 ORTHO05D008564 6.0e-183 644.8 501 65.5
SHI19141 Sapria himalayana HOM05D006922 ORTHO05D008564 3.7e-180 635.6 476 63.9
Ca_05595_v3 Cicer arietinum L. HOM05D006922 ORTHO05D008564 5.7e-173 611.7 515 60.2
AagrBONN_evm.TU.Sc2ySwM_344.796 Anthoceros agrestis HOM05D006922 ORTHO05D008564 9.3e-168 594.3 469 61.0
Prupe.6G058000 Prunus persica HOM05D006922 ORTHO05D008564 2.1e-167 593.2 557 59.8
SMO200G0225 Selaginella moellendorffii HOM05D006922 ORTHO05D008564 2.5e-165 586.3 435 60.5
Zm00001eb335650 Zea mays HOM05D006922 ORTHO05D008564 4.8e-164 582.0 445 60.0
CBR_g22343 Chara braunii HOM05D006922 ORTHO05D008564 1.8e-163 580.1 469 59.5
Pp3c8_16660 Physcomitrium patens HOM05D006922 ORTHO05D008564 5.9e-154 548.5 429 58.7
FAN11G1737 Fragaria x ananassa HOM05D006922 ORTHO05D008564 8.5e-153 544.7 373 68.9
unitig_0.g440 Utricularia gibba HOM05D006922 ORTHO05D008564 1.1e-147 527.7 513 54.8
HPP92_019877 Vanilla planifolia HOM05D006922 ORTHO05D008564 2.9e-137 493.0 494 53.0
FAN16G0983 Fragaria x ananassa HOM05D006922 ORTHO05D008564 2.1e-95 354.0 265 67.2
Hma1.2p1_0227F.1_g096470 Hydrangea macrophylla HOM05D006922 ORTHO05D008564 7.1e-75 285.8 164 78.0
COL.COLO4_19151 Corchorus olitorius HOM05D006922 ORTHO05D008564 9.6e-56 222.2 287 44.3
Cre13.g577550 Chlamydomonas reinhardtii HOM05D006922 ORTHO05D008564 1.1e-54 218.8 449 32.3
CAN.G3.37 Capsicum annuum HOM05D006922 ORTHO05D008564 4.1e-54 216.9 267 51.3
SEGI_07058 Sequoiadendron giganteum HOM05D006922 ORTHO05D008564 3.8e-52 210.3 143 64.3
PGSC0003DMG400022078 Solanum tuberosum HOM05D006922 ORTHO05D008564 4.2e-51 206.8 140 78.6
Actinidia23246 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.0e-44 185.7 124 73.4
FAN21G0821 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.9e-43 181.4 106 71.7
Actinidia16090 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.9e-35 154.8 97 68.0
Zm00001eb098530 Zea mays HOM05D008428 ORTHO05D010743 2.2e-31 141.4 185 44.3
Zm00001eb204440 Zea mays HOM05D008428 ORTHO05D010743 4.5e-29 133.7 211 43.6
Zm00001eb302770 Zea mays HOM05D008428 ORTHO05D010743 2.9e-28 131.0 211 43.1
Actinidia25165 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.4e-25 122.1 74 73.0
Actinidia16091 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.7e-20 105.1 58 82.8
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 2.7e-18 97.8 341 28.2
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 1.4e-17 95.5 333 25.8
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 5.2e-17 93.6 335 25.7
CDE02G4620 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 8.8e-17 92.8 194 37.6
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 1.2e-16 92.4 328 26.2
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 4.4e-16 90.5 339 23.9
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 1.3e-15 89.0 335 23.3
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 1.3e-15 89.0 331 24.5
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 1.7e-15 88.6 255 27.8
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 3.7e-15 87.4 372 25.0
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 1.4e-14 85.5 258 27.5
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 4.1e-14 84.0 326 24.2
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 7.0e-14 83.2 333 24.3
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 1.2e-13 82.4 352 25.3
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 1.6e-13 82.0 335 23.6
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 1.6e-13 82.0 254 26.0
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 1.6e-13 82.0 315 25.4
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 3.5e-13 80.9 250 28.0
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 4.5e-13 80.5 334 24.0
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 4.5e-13 80.5 288 25.7
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 5.9e-13 80.1 313 24.3
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 5.9e-13 80.1 352 23.6
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 1.0e-12 79.3 286 25.9
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 1.0e-12 79.3 362 24.9
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 1.3e-12 79.0 362 24.9
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 1.7e-12 78.6 323 23.2
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 1.7e-12 78.6 341 22.6
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 5.0e-12 77.0 253 25.3
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 5.0e-12 77.0 335 23.9
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 6.5e-12 76.6 211 26.1
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 1.1e-11 75.9 351 22.8
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 5.5e-11 73.6 216 25.9
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 9.5e-11 72.8 334 24.3
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 1.2e-10 72.4 265 26.8
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.2e-10 72.4 265 26.8
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.2e-10 72.4 358 24.3
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 1.2e-10 72.4 355 24.2
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 1.6e-10 72.0 344 23.0
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.6e-10 72.0 267 27.0
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 2.1e-10 71.6 329 24.3
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 2.1e-10 71.6 230 25.7
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.1e-10 71.6 262 27.1
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.1e-10 71.6 260 26.9
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 8.0e-10 69.7 261 24.9
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 8.0e-10 69.7 219 26.5
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 8.0e-10 69.7 337 24.0
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 3.0e-09 67.8 330 22.7
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 3.0e-09 67.8 334 22.5
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 6.8e-09 66.6 252 25.8
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 8.8e-09 66.2 259 25.9
Actinidia14201 Actinidia chinensis HOM05D000103 ORTHO05D000049 1.2e-08 65.9 51 54.9
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.5e-08 65.5 260 25.4
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 5.7e-08 63.5 213 27.2
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 5.7e-08 63.5 330 22.7
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 5.7e-08 63.5 330 22.7
Lsat_1_v5_gn_3_57841 Lactuca sativa HOM05D003404 ORTHO05D004052 5.7e-08 63.5 48 52.1
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.7e-07 62.0 374 23.3
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 8.3e-07 59.7 265 23.0
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 1.1e-06 59.3 172 27.3
Actinidia14207 Actinidia chinensis HOM05D000103 ORTHO05D008564 1.8e-06 58.5 41 63.4
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 3.1e-06 57.8 120 25.8
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 3.1e-06 57.8 120 25.8
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 3.1e-06 57.8 120 25.8
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 5.4e-06 57.0 105 31.4
AUR62026981 Chenopodium quinoa HOM05D000096 ORTHO05D000045 7.0e-06 56.6 40 65.0


User provided reference genes

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