Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 7.0e-136 487.3 242 100.0
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 7.0e-128 460.7 242 94.6
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 3.5e-111 405.2 242 84.7
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 6.0e-111 404.4 242 84.7
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 1.3e-110 403.3 242 84.7
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 3.2e-96 355.5 222 77.5
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 2.7e-95 352.4 240 73.3
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 1.2e-92 343.6 215 78.1
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 6.2e-92 341.3 223 75.3
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 3.1e-91 339.0 240 72.1
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 6.8e-91 337.8 236 71.2
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 7.6e-90 334.3 240 71.2
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 2.2e-89 332.8 229 73.4
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 2.9e-89 332.4 230 72.6
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 6.4e-89 331.3 230 72.2
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 6.4e-89 331.3 239 69.9
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 1.9e-88 329.7 229 71.6
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 1.9e-88 329.7 221 73.8
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 2.4e-88 329.3 224 74.1
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 5.4e-88 328.2 242 71.5
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 5.4e-88 328.2 228 71.9
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 7.1e-88 327.8 235 73.6
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 1.2e-87 327.0 223 72.6
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 4.6e-87 325.1 224 71.0
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 7.8e-87 324.3 218 73.9
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 1.0e-86 323.9 242 68.6
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 1.3e-86 323.6 230 71.7
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 1.7e-86 323.2 243 70.0
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 2.3e-86 322.8 222 71.2
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 3.9e-86 322.0 222 69.8
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 6.6e-86 321.2 242 67.4
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 1.1e-85 320.5 231 69.7
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 2.5e-85 319.3 240 70.4
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 2.5e-85 319.3 226 69.5
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 3.3e-85 318.9 222 71.2
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 4.3e-85 318.5 225 71.1
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 4.3e-85 318.5 219 72.1
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 9.6e-85 317.4 239 67.4
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 1.3e-84 317.0 222 69.8
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 1.6e-84 316.6 225 69.8
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 2.1e-84 316.2 225 68.4
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 4.8e-84 315.1 216 72.7
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 6.2e-84 314.7 230 70.9
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 8.1e-84 314.3 225 69.3
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 2.4e-83 312.8 242 66.1
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 2.4e-83 312.8 221 70.1
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 2.0e-82 309.7 218 72.5
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 2.0e-82 309.7 242 68.2
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 2.6e-82 309.3 230 66.1
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 4.4e-82 308.5 217 71.0
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 5.8e-82 308.1 230 68.3
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 7.6e-82 307.8 235 65.1
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 7.6e-82 307.8 235 65.1
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 1.7e-81 306.6 219 70.8
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 2.2e-81 306.2 223 69.1
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 6.4e-81 304.7 212 69.8
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 2.4e-80 302.8 223 67.7
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 4.2e-80 302.0 239 65.3
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 5.4e-80 301.6 223 66.8
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 5.4e-80 301.6 223 66.8
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 1.6e-79 300.1 235 66.4
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 3.5e-79 298.9 223 65.9
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 4.6e-79 298.5 223 68.2
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 6.0e-79 298.1 223 67.3
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 6.0e-79 298.1 241 63.1
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 7.9e-79 297.7 223 68.2
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 1.3e-78 297.0 240 63.8
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 2.3e-78 296.2 220 67.7
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 1.9e-77 293.1 229 65.5
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 2.5e-77 292.7 237 63.3
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 2.5e-77 292.7 217 67.7
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 5.6e-77 291.6 240 65.0
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 7.3e-77 291.2 236 64.8
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 7.3e-77 291.2 215 67.4
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 9.6e-77 290.8 223 65.5
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 1.3e-76 290.4 225 63.6
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 1.6e-76 290.0 228 64.5
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 2.1e-76 289.7 220 67.3
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 6.2e-76 288.1 225 63.6
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 4.0e-75 285.4 222 65.3
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 1.5e-74 283.5 233 62.7
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 5.8e-74 281.6 230 63.5
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 6.4e-73 278.1 230 63.0
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 6.4e-73 278.1 230 63.0
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 1.1e-72 277.3 231 59.3
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 1.9e-72 276.6 225 62.2
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 1.6e-71 273.5 228 59.6
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 3.5e-71 272.3 229 62.4
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 8.7e-70 267.7 248 55.6
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 2.8e-68 262.7 227 59.0
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 2.4e-67 259.6 259 57.1
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 2.6e-66 256.1 208 66.3
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.5e-66 255.4 242 58.7
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 7.9e-63 244.6 131 86.3
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 1.3e-62 243.8 234 53.0
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 1.2e-58 230.7 179 66.5
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 1.9e-56 223.4 231 49.4
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 3.2e-56 222.6 129 79.8
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 5.3e-51 205.3 163 67.5
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 7.7e-50 201.4 124 73.4
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 7.7e-50 201.4 124 73.4
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 1.0e-49 201.1 193 57.5
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.8e-49 199.1 169 64.5
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.8e-49 199.1 168 64.9
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 1.1e-48 197.6 205 53.7
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 3.3e-45 186.0 172 59.3
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 1.7e-44 183.7 187 55.6
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 2.1e-39 166.8 253 38.3
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 2.7e-39 166.4 104 72.1
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 1.4e-38 164.1 138 58.0
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 2.6e-37 159.8 120 64.2
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 1.7e-36 157.1 149 55.0
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 8.5e-33 144.8 118 61.0
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 1.5e-32 144.1 140 55.7
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 2.7e-31 139.8 151 46.4
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.7e-28 130.6 76 78.9
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 4.8e-28 129.0 133 53.4
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.8e-27 127.1 76 75.0
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.4e-27 126.7 75 78.7
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 5.3e-27 125.6 76 77.6
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 9.1e-27 124.8 76 76.3
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 9.1e-27 124.8 76 76.3
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.6e-26 124.0 75 77.3
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.6e-26 124.0 75 77.3
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 1.5e-24 117.5 68 76.5
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 5.5e-24 115.5 120 57.5
Zm00001eb096050 Zea mays HOM05D005267 ORTHO05D006303 4.0e-22 109.4 135 51.1
MSTRG.10424 Avicennia marina HOM05D005267 ORTHO05D006303 6.8e-22 108.6 99 57.6
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 1.5e-21 107.5 68 70.6
HPP92_004175 Vanilla planifolia HOM05D002029 ORTHO05D002158 3.5e-18 96.3 96 56.2
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 6.5e-17 92.0 82 59.8
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 2.5e-16 90.1 55 72.7
arahy.Tifrunner.gnm1.ann1.PYJ9JQ Arachis hypogaea HOM05D005267 ORTHO05D006303 5.5e-16 89.0 64 65.6
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 1.2e-15 87.8 80 56.2
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 2.7e-15 86.7 82 50.0
A04p02570 Brassica napus HOM05D005267 ORTHO05D006303 3.6e-15 86.3 100 49.0
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 6.1e-15 85.5 46 80.4
BcaB02g08262 Brassica carinata HOM05D005267 ORTHO05D006303 1.4e-14 84.3 103 49.5
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 3.0e-14 83.2 185 34.6
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.5e-13 80.9 51 70.6
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 1.1e-11 74.7 152 32.2
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 3.1e-11 73.2 166 27.1
MCO14G360 Micromonas commoda HOM05D005267 ORTHO05D006303 4.1e-11 72.8 163 27.6
Cre10.g418700 Chlamydomonas reinhardtii HOM05D005267 ORTHO05D006303 2.0e-10 70.5 173 28.9
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 1.7e-09 67.4 67 52.2
Mapoly0004s0240 Marchantia polymorpha HOM05D005267 ORTHO05D006303 1.7e-09 67.4 169 26.6
Pp3c8_10880 Physcomitrium patens HOM05D005267 ORTHO05D006303 1.6e-07 60.8 206 22.3
AagrBONN_evm.TU.Sc2ySwM_362.204 Anthoceros agrestis HOM05D005267 ORTHO05D006303 3.6e-07 59.7 130 28.5
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 8.9e-06 55.1 36 61.1


User provided reference genes

Program Settings