Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.5e-242 842.4 420 100.0
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.9e-177 625.5 389 83.5
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 2.9e-177 625.5 389 81.5
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 1.5e-170 603.2 389 79.4
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 1.2e-148 530.4 487 62.0
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 7.1e-136 488.0 421 63.4
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.6e-135 486.9 421 63.2
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 3.5e-135 485.7 421 63.2
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 2.9e-129 466.1 423 61.9
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 3.7e-124 449.1 388 61.3
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 1.1e-123 447.6 390 60.8
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 5.8e-122 441.8 388 62.1
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 1.7e-121 440.3 388 60.3
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 2.9e-121 439.5 259 79.2
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 2.5e-120 436.4 388 60.1
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 2.5e-120 436.4 389 60.4
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 9.3e-120 434.5 257 79.8
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 1.6e-119 433.7 397 59.9
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.1e-119 433.3 257 79.0
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 2.1e-119 433.3 391 59.1
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 3.5e-119 432.6 390 59.5
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 3.5e-119 432.6 390 59.5
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 7.9e-119 431.4 388 59.3
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 1.0e-118 431.0 388 60.1
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 3.9e-118 429.1 389 60.4
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 6.7e-118 428.3 388 58.2
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 6.7e-118 428.3 257 79.0
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.1e-117 427.6 296 73.0
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 1.9e-117 426.8 257 76.3
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 3.3e-117 426.0 391 60.1
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 5.7e-117 425.2 388 59.3
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 3.7e-116 422.5 388 58.8
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 3.7e-116 422.5 256 78.1
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 4.8e-116 422.2 259 77.2
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 6.3e-116 421.8 419 55.6
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 6.3e-116 421.8 282 72.7
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 8.2e-116 421.4 389 58.6
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 1.1e-115 421.0 256 77.7
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 1.2e-114 417.5 390 57.7
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.5e-114 417.2 256 76.6
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 2.6e-114 416.4 391 57.5
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 2.6e-114 416.4 389 59.1
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 4.5e-114 415.6 388 58.5
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 1.0e-113 414.5 253 75.5
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 1.7e-113 413.7 253 77.5
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 3.8e-113 412.5 390 57.9
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 5.0e-113 412.1 388 58.2
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 1.9e-112 410.2 388 59.3
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 3.2e-112 409.5 389 56.8
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 4.2e-112 409.1 389 57.3
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 4.2e-112 409.1 256 75.8
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 1.6e-111 407.1 389 55.5
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 1.6e-111 407.1 389 56.6
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 2.1e-111 406.8 388 55.7
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 2.7e-111 406.4 388 55.9
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 3.6e-111 406.0 388 57.0
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 7.9e-111 404.8 393 56.5
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 1.3e-110 404.1 388 55.2
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 8.8e-110 401.4 270 71.5
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 4.3e-109 399.1 255 72.9
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 2.8e-108 396.4 389 55.8
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 3.7e-108 396.0 389 55.3
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 4.8e-108 395.6 318 62.3
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 8.2e-108 394.8 256 71.9
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 1.1e-107 394.4 256 73.4
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 3.1e-107 392.9 387 55.3
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 4.1e-107 392.5 391 55.2
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 4.1e-107 392.5 389 55.0
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 6.9e-107 391.7 341 59.8
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.2e-106 391.0 391 54.7
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 5.9e-106 388.7 386 56.2
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 1.3e-105 387.5 389 54.8
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 2.9e-105 386.3 389 53.7
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 6.5e-105 385.2 263 70.3
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 1.1e-104 384.4 394 55.1
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 1.6e-103 380.6 391 54.0
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.6e-103 379.4 278 66.5
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 3.6e-103 379.4 234 76.5
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 4.7e-103 379.0 389 55.5
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 6.1e-103 378.6 263 67.3
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 2.3e-102 376.7 384 53.9
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 3.0e-102 376.3 394 53.6
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.0e-102 376.3 388 54.9
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 1.1e-101 374.4 400 50.8
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.3e-101 372.9 414 54.1
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 4.4e-101 372.5 395 53.2
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 3.6e-95 352.8 395 51.6
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 6.1e-95 352.1 389 50.1
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 8.0e-95 351.7 389 49.6
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 8.0e-95 351.7 372 54.8
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 1.1e-93 347.8 389 48.8
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 2.0e-93 347.1 258 64.0
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 3.3e-93 346.3 387 49.4
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 4.8e-92 342.4 210 73.8
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 8.2e-92 341.7 207 74.4
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 1.3e-89 334.3 390 47.7
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 1.3e-89 334.3 344 53.8
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 2.9e-89 333.2 338 52.7
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 1.5e-88 330.9 403 48.9
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 1.6e-87 327.4 261 58.6
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 6.1e-87 325.5 389 46.3
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 1.4e-86 324.3 365 51.5
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 1.2e-85 321.2 257 60.7
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 1.5e-85 320.9 264 57.2
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 2.8e-84 316.6 264 56.4
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 4.1e-83 312.8 388 44.1
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 4.1e-83 312.8 388 44.1
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 1.2e-82 311.2 273 55.3
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 2.7e-82 310.1 388 43.8
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 7.7e-82 308.5 390 44.1
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 2.9e-81 306.6 264 55.7
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 1.1e-80 304.7 264 55.3
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 5.5e-80 302.4 264 54.9
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 1.6e-79 300.8 174 82.2
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.1e-75 288.1 397 44.8
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 1.7e-73 280.8 172 77.3
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 2.2e-68 263.8 262 50.4
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 1.6e-66 257.7 174 67.2
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 2.0e-66 257.3 167 71.3
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 1.0e-65 255.0 159 72.3
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.7e-57 227.6 219 51.6
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 6.6e-57 225.7 413 38.3
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.3e-56 223.4 153 69.3
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.6e-55 221.1 150 72.7
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.1e-43 181.8 159 59.1
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 9.5e-40 168.7 113 70.8
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 2.8e-39 167.2 248 39.9
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 6.8e-38 162.5 119 64.7
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.6e-31 141.4 100 70.0
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 5.3e-30 136.3 80 77.5
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 5.4e-27 126.3 117 53.0
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 1.5e-21 108.2 215 40.0
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.4e-19 100.9 57 73.7
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.1e-14 85.5 186 38.7
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 4.0e-14 83.6 51 78.4
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 5.3e-14 83.2 183 37.7
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.2e-12 77.8 48 70.8
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 2.9e-12 77.4 76 53.9
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 4.2e-11 73.6 53 69.8
MD11G1180000 Malus domestica HOM05D006479 ORTHO05D008310 4.8e-07 60.1 189 27.0
Gohir.D05G078100 Gossypium hirsutum HOM05D006479 ORTHO05D008310 8.2e-07 59.3 76 35.5
Gorai.009G079600 Gossypium raimondii HOM05D006479 ORTHO05D008310 8.2e-07 59.3 76 35.5
Gohir.A05G075300 Gossypium hirsutum HOM05D006479 ORTHO05D008310 3.1e-06 57.4 76 35.5
MD00G1031900 Malus domestica HOM05D006479 ORTHO05D008310 3.1e-06 57.4 136 28.7
Sc21g0006530 Simmondsia chinensis HOM05D006479 ORTHO05D008310 4.0e-06 57.0 128 29.7
QL01p020440 Quercus lobata HOM05D006479 ORTHO05D008310 5.3e-06 56.6 136 27.9
AUR62020174 Chenopodium quinoa HOM05D006479 ORTHO05D008310 6.9e-06 56.2 75 37.3
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 6.9e-06 56.2 74 31.1
EL10Ac7g16227 Beta vulgaris HOM05D006479 ORTHO05D008310 9.0e-06 55.8 75 37.3


User provided reference genes

Program Settings