Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 5.4e-104 380.9 186 100.0
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.5e-77 293.1 185 78.9
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 1.1e-35 154.1 274 40.1
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 3.5e-34 149.1 274 39.8
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 5.5e-32 141.7 227 42.7
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.6e-31 140.2 235 41.3
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 6.1e-31 138.3 230 41.7
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.0e-30 137.5 282 37.2
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.3e-30 136.3 235 39.1
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 8.8e-30 134.4 230 40.9
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 5.4e-27 125.2 214 39.3
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 3.3e-24 115.9 219 37.4
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 3.3e-24 115.9 207 38.2
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.2e-24 115.5 202 39.6
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 7.2e-24 114.8 202 39.6
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 2.8e-23 112.8 215 36.3
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 2.8e-23 112.8 219 38.4
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.7e-23 112.1 202 38.6
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 6.1e-23 111.7 143 42.0
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 6.1e-23 111.7 143 42.0
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 6.1e-23 111.7 150 42.7
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 6.1e-23 111.7 167 41.9
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 8.0e-23 111.3 144 41.7
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 1.0e-22 110.9 217 36.4
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 1.4e-22 110.5 217 35.9
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.4e-22 110.5 207 37.2
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 1.4e-22 110.5 157 38.2
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 2.3e-22 109.8 131 42.7
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 2.3e-22 109.8 220 35.0
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 4.0e-22 109.0 139 42.4
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 4.0e-22 109.0 215 35.3
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 5.2e-22 108.6 163 42.3
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 6.8e-22 108.2 216 35.6
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.5e-21 107.1 212 35.8
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 2.0e-21 106.7 220 35.0
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 2.6e-21 106.3 218 34.4
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 2.6e-21 106.3 219 34.7
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.4e-21 105.5 213 33.8
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 4.4e-21 105.5 218 32.1
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 4.4e-21 105.5 131 44.3
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 5.7e-21 105.1 197 39.6
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 5.7e-21 105.1 139 41.7
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 7.5e-21 104.8 218 35.3
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 7.5e-21 104.8 156 42.3
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 9.8e-21 104.4 141 38.3
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.7e-20 103.6 147 43.5
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 2.2e-20 103.2 215 33.5
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 2.2e-20 103.2 211 37.0
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 2.8e-20 102.8 138 41.3
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 2.8e-20 102.8 219 33.3
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 2.8e-20 102.8 231 32.9
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 4.9e-20 102.1 194 34.5
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 6.3e-20 101.7 219 35.6
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 6.3e-20 101.7 225 35.6
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 6.3e-20 101.7 225 35.6
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 8.3e-20 101.3 181 35.9
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 1.1e-19 100.9 151 41.1
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 1.1e-19 100.9 210 34.3
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 1.1e-19 100.9 163 39.9
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 1.4e-19 100.5 188 37.2
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 1.4e-19 100.5 219 35.6
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.8e-19 100.1 208 34.6
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 1.8e-19 100.1 159 40.9
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 2.4e-19 99.8 147 39.5
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 2.4e-19 99.8 147 39.5
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.4e-19 99.8 214 35.0
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.4e-19 99.8 214 31.8
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.1e-19 99.4 208 34.6
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 3.1e-19 99.4 210 36.7
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 5.4e-19 98.6 214 31.3
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 9.2e-19 97.8 222 34.2
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 9.2e-19 97.8 145 42.1
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.2e-18 97.4 234 32.5
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.2e-18 97.4 140 40.0
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 3.5e-18 95.9 215 34.9
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 4.5e-18 95.5 237 32.1
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 5.9e-18 95.1 171 35.7
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.9e-18 95.1 144 38.9
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 7.8e-18 94.7 131 41.2
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.0e-17 94.4 132 40.2
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.3e-17 94.0 132 39.4
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 2.3e-17 93.2 144 36.8
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 3.9e-17 92.4 162 37.0
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 5.0e-17 92.0 208 31.2
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 6.6e-17 91.7 137 38.7
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 6.6e-17 91.7 214 35.0
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 6.6e-17 91.7 180 33.9
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 1.9e-16 90.1 139 37.4
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 3.3e-16 89.4 212 32.5
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 5.6e-16 88.6 161 34.8
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 7.3e-16 88.2 210 34.3
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 2.1e-15 86.7 234 30.8
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 2.8e-15 86.3 119 42.0
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 3.6e-15 85.9 139 33.8
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 1.0e-14 84.3 123 38.2
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 2.3e-14 83.2 125 39.2
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 4.0e-14 82.4 91 44.0
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 1.2e-13 80.9 202 34.2
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 7.5e-13 78.2 239 28.0
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 1.7e-12 77.0 221 29.0
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 2.2e-12 76.6 124 37.1
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 3.7e-12 75.9 166 33.1
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 8.3e-12 74.7 50 66.0
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 8.3e-12 74.7 163 29.4
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 5.4e-11 72.0 140 33.6
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 3.5e-10 69.3 148 33.1
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 1.3e-09 67.4 136 33.8
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 1.3e-09 67.4 163 32.5
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 1.7e-09 67.0 50 62.0
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 8.6e-09 64.7 141 33.3
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 8.6e-09 64.7 128 32.8
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 1.1e-08 64.3 132 34.1
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 1.1e-08 64.3 132 34.1
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 2.5e-08 63.2 42 66.7
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 3.3e-08 62.8 139 33.8
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 9.5e-08 61.2 124 34.7
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 9.5e-08 61.2 124 34.7
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 9.5e-08 61.2 124 34.7
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 9.5e-08 61.2 144 31.9
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 1.6e-07 60.5 129 34.1
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 1.6e-07 60.5 129 34.1
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.6e-07 60.5 39 66.7
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 1.6e-07 60.5 39 56.4
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 2.8e-07 59.7 131 34.4
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 2.8e-07 59.7 184 29.3
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 3.6e-07 59.3 129 34.1
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 3.6e-07 59.3 141 32.6
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 4.7e-07 58.9 198 29.3
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 4.7e-07 58.9 139 31.7
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 4.7e-07 58.9 96 37.5
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 6.2e-07 58.5 118 35.6
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.4e-06 57.4 92 39.1
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 2.3e-06 56.6 92 38.0
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 4.0e-06 55.8 37 64.9
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 4.0e-06 55.8 49 44.9
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 4.0e-06 55.8 37 56.8


User provided reference genes

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