Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006409g0090 Nicotiana tabacum HOM05D000533 ORTHO05D002807 8.1e-55 216.9 111 100.0
Lsat_1_v5_gn_5_65981 Lactuca sativa HOM05D000533 ORTHO05D001069 7.9e-34 147.1 118 72.9
CAN.G1045.10 Capsicum annuum HOM05D000533 ORTHO05D002807 3.7e-31 138.3 96 80.2
Migut.D01248 Erythranthe guttata HOM05D000533 ORTHO05D001069 4.8e-31 137.9 117 70.1
Solyc00g500041.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 4.8e-31 137.9 96 80.2
Solyc00g500086.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 4.8e-31 137.9 96 80.2
Solyc00g500123.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 4.8e-31 137.9 96 80.2
Solyc00g500193.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 4.8e-31 137.9 96 80.2
CAN.G1298.18 Capsicum annuum HOM05D000533 ORTHO05D002807 6.2e-31 137.5 96 80.2
CAN.G1470.9 Capsicum annuum HOM05D000533 ORTHO05D002807 6.2e-31 137.5 96 80.2
PGSC0003DMG402008783 Solanum tuberosum HOM05D000533 ORTHO05D002807 1.1e-30 136.7 96 79.2
CAN.G1526.1 Capsicum annuum HOM05D000533 ORTHO05D002807 5.3e-30 134.4 96 79.2
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 9.0e-30 133.7 117 70.1
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 9.0e-30 133.7 117 70.1
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 9.0e-30 133.7 117 70.1
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 9.0e-30 133.7 117 70.1
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 9.0e-30 133.7 117 70.1
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 9.0e-30 133.7 117 70.1
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 9.0e-30 133.7 117 70.1
Nitab4.5_0000660g0060 Nicotiana tabacum HOM05D000533 ORTHO05D002807 9.0e-30 133.7 118 68.6
CSS0030738 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D001069 1.5e-29 132.9 99 71.7
vmacro22393 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 3.4e-29 131.7 96 75.0
vmacro22419 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 3.4e-29 131.7 96 75.0
Sopen02g002710 Solanum pennellii HOM05D000533 ORTHO05D002807 5.8e-29 131.0 93 77.4
DCAR_032541 Daucus carota HOM05D000533 ORTHO05D002807 9.9e-29 130.2 96 76.0
EL10Ac6g14288 Beta vulgaris HOM05D000533 ORTHO05D002807 1.7e-28 129.4 96 76.0
EL10As15g24097 Beta vulgaris HOM05D000533 ORTHO05D002807 1.7e-28 129.4 96 76.0
Hma1.2p1_0660F.1_g197440 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 4.9e-28 127.9 96 74.0
Hma1.2p1_2753F.1_g327925 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 4.9e-28 127.9 96 74.0
Solyc11g021233.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 6.4e-28 127.5 91 76.9
HanXRQChr00c0336g0573691 Helianthus annuus HOM05D000533 ORTHO05D002807 8.4e-28 127.1 96 74.0
GSVIVG01012613001 Vitis vinifera HOM05D000533 ORTHO05D001069 8.4e-28 127.1 117 66.7
Gorai.005G106600 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.4e-27 126.3 117 65.8
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 1.9e-27 125.9 118 65.3
Sed0004290 Sechium edule HOM05D000533 ORTHO05D002807 3.2e-27 125.2 96 71.9
Sed0023589 Sechium edule HOM05D000533 ORTHO05D002807 3.2e-27 125.2 96 71.9
Sed0023659 Sechium edule HOM05D000533 ORTHO05D002807 3.2e-27 125.2 96 71.9
Gohir.A01G139542 Gossypium hirsutum HOM05D000533 ORTHO05D002807 4.2e-27 124.8 117 64.1
arahy.Tifrunner.gnm1.ann1.1262SD Arachis hypogaea HOM05D000533 ORTHO05D002807 5.5e-27 124.4 97 71.1
arahy.Tifrunner.gnm1.ann1.510BCU Arachis hypogaea HOM05D000533 ORTHO05D002807 5.5e-27 124.4 97 71.1
Psat0s6989g0240 Pisum sativum HOM05D000533 ORTHO05D001069 7.1e-27 124.0 118 63.6
Psat1g050080 Pisum sativum HOM05D000533 ORTHO05D001069 7.1e-27 124.0 118 63.6
Psat3g095040 Pisum sativum HOM05D000533 ORTHO05D001069 7.1e-27 124.0 118 63.6
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 7.1e-27 124.0 118 63.6
PGR111G0022 Punica granatum HOM05D000533 ORTHO05D002807 7.1e-27 124.0 96 70.8
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 9.3e-27 123.6 118 64.4
Lj2C1229T2 Lonicera japonica HOM05D000533 ORTHO05D002807 1.2e-26 123.2 96 69.8
Ah.10g027030 Amaranthus hybridus HOM05D000533 ORTHO05D002807 1.6e-26 122.9 96 72.9
arahy.Tifrunner.gnm1.ann1.840LER Arachis hypogaea HOM05D000533 ORTHO05D002807 1.6e-26 122.9 97 70.1
MELO3C027055.2 Cucumis melo HOM05D000533 ORTHO05D002807 2.7e-26 122.1 96 69.8
Lju5009P0T26 Lonicera japonica HOM05D000533 ORTHO05D002807 3.5e-26 121.7 96 71.9
RcHm_v2.0_Chr3g0470801 Rosa chinensis HOM05D000533 ORTHO05D002807 4.6e-26 121.3 96 69.8
AL9U11959 Arabidopsis lyrata HOM05D000533 ORTHO05D002807 6.0e-26 120.9 103 68.0
Gohir.D02G093940 Gossypium hirsutum HOM05D000533 ORTHO05D002807 6.0e-26 120.9 117 63.2
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 6.0e-26 120.9 96 69.8
FAN01G2990 Fragaria x ananassa HOM05D000533 ORTHO05D002807 7.9e-26 120.6 94 71.3
ATCG01100 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 1.0e-25 120.2 103 68.0
CARHR282470 Cardamine hirsuta HOM05D000533 ORTHO05D002807 1.0e-25 120.2 103 68.0
Nn064s42206 Nelumbo nucifera HOM05D000533 ORTHO05D002807 1.8e-25 119.4 96 68.8
LjContig00318g0007609 Lotus japonicus HOM05D000533 ORTHO05D002807 2.3e-25 119.0 97 67.0
LjContig00319g0005103 Lotus japonicus HOM05D000533 ORTHO05D002807 2.3e-25 119.0 97 67.0
Lalb_Chr07g0191821 Lupinus albus HOM05D000533 ORTHO05D001069 2.3e-25 119.0 118 60.2
Psat0s1160g0400 Pisum sativum HOM05D000533 ORTHO05D002807 3.9e-25 118.2 97 68.0
Psat4g172360 Pisum sativum HOM05D000533 ORTHO05D002807 3.9e-25 118.2 97 68.0
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 5.1e-25 117.9 96 68.8
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 8.7e-25 117.1 97 69.1
SalBow1G0006 Salvia bowleyana HOM05D000533 ORTHO05D002807 1.1e-24 116.7 105 67.6
C05p53830 Brassica napus HOM05D000533 ORTHO05D002807 1.5e-24 116.3 103 66.0
C09p40310 Brassica napus HOM05D000533 ORTHO05D002807 1.5e-24 116.3 103 66.0
BolC2t10600H Brassica oleracea HOM05D000533 ORTHO05D002807 1.5e-24 116.3 103 66.0
BolSC35t60689H Brassica oleracea HOM05D000533 ORTHO05D002807 1.5e-24 116.3 103 66.0
BolSC44t60825H Brassica oleracea HOM05D000533 ORTHO05D002807 1.5e-24 116.3 103 66.0
BolSC45t60906H Brassica oleracea HOM05D000533 ORTHO05D002807 1.5e-24 116.3 103 66.0
BolSC46t60955H Brassica oleracea HOM05D000533 ORTHO05D002807 1.5e-24 116.3 103 66.0
BolSC47t61062H Brassica oleracea HOM05D000533 ORTHO05D002807 1.5e-24 116.3 103 66.0
BraSC103t45432Z Brassica rapa HOM05D000533 ORTHO05D002807 1.5e-24 116.3 103 66.0
BraSC143t45657Z Brassica rapa HOM05D000533 ORTHO05D002807 1.5e-24 116.3 103 66.0
BraSC25t45913Z Brassica rapa HOM05D000533 ORTHO05D002807 1.5e-24 116.3 103 66.0
BraSC59t46529Z Brassica rapa HOM05D000533 ORTHO05D002807 1.5e-24 116.3 103 66.0
Medtr0002s0150 Medicago truncatula HOM05D000533 ORTHO05D001069 1.9e-24 115.9 117 60.7
Psat0s411g0120 Pisum sativum HOM05D000533 ORTHO05D002807 2.5e-24 115.5 97 64.9
BolC9t56913H Brassica oleracea HOM05D000533 ORTHO05D002807 4.3e-24 114.8 103 65.0
PSO548G0012 Papaver somniferum HOM05D000533 ORTHO05D002807 9.6e-24 113.6 96 65.6
C02p28820 Brassica napus HOM05D000533 ORTHO05D002807 2.1e-23 112.5 103 63.1
BolC2t08927H Brassica oleracea HOM05D000533 ORTHO05D002807 2.1e-23 112.5 103 63.1
Psat1g104960 Pisum sativum HOM05D000533 ORTHO05D002807 2.1e-23 112.5 97 63.9
Potri.013G074800 Populus trichocarpa HOM05D000533 ORTHO05D002807 8.2e-23 110.5 96 66.7
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.1e-22 110.2 92 67.4
Psat0s1586g0320 Pisum sativum HOM05D000533 ORTHO05D002807 2.4e-22 109.0 97 62.9
Oeu012820.1 Olea europaea HOM05D000533 ORTHO05D002807 5.3e-22 107.8 114 57.9
Sed0007463 Sechium edule HOM05D000533 ORTHO05D002807 2.6e-21 105.5 89 67.4
Ah.10g027260 Amaranthus hybridus HOM05D000533 ORTHO05D001069 2.9e-20 102.1 110 59.1
Ah.10g027700 Amaranthus hybridus HOM05D000533 ORTHO05D001069 2.9e-20 102.1 110 59.1
HanXRQChr01g0020051 Helianthus annuus HOM05D000533 ORTHO05D002807 3.8e-20 101.7 80 72.5
Gohir.D11G339850 Gossypium hirsutum HOM05D000533 ORTHO05D002807 6.5e-20 100.9 96 59.4
Gorai.007G369400 Gossypium raimondii HOM05D000533 ORTHO05D002807 8.4e-20 100.5 96 59.4
Nitab4.5_0006502g0040 Nicotiana tabacum HOM05D000533 ORTHO05D002807 1.1e-19 100.1 76 76.3
Psat0s1160g0320 Pisum sativum HOM05D000533 ORTHO05D001069 1.1e-19 100.1 166 44.0
CAN.G965.4 Capsicum annuum HOM05D000533 ORTHO05D002807 3.2e-19 98.6 77 75.3
Nitab4.5_0000843g0030 Nicotiana tabacum HOM05D000533 ORTHO05D002807 5.5e-19 97.8 77 74.0
SEGI_20811 Sequoiadendron giganteum HOM05D000533 ORTHO05D002807 5.5e-19 97.8 97 55.7
CAN.G30.8 Capsicum annuum HOM05D000533 ORTHO05D002807 3.5e-18 95.1 76 71.1
BolC2t10614H Brassica oleracea HOM05D000533 ORTHO05D002807 4.6e-18 94.7 102 56.9
Nitab4.5_0007400g0060 Nicotiana tabacum HOM05D000533 ORTHO05D002807 6.0e-18 94.4 89 62.9
CAN.G262.8 Capsicum annuum HOM05D000533 ORTHO05D002807 1.0e-17 93.6 76 72.4
CAN.G127.11 Capsicum annuum HOM05D000533 ORTHO05D002807 1.3e-17 93.2 76 69.7
Medtr3g113820 Medicago truncatula HOM05D000533 ORTHO05D002807 2.3e-17 92.4 97 61.9
Gorai.009G395200 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.9e-16 89.4 76 64.5
arahy.Tifrunner.gnm1.ann1.V68ACY Arachis hypogaea HOM05D000533 ORTHO05D001069 2.2e-15 85.9 70 68.6
Gohir.D04G093016 Gossypium hirsutum HOM05D000533 ORTHO05D002807 2.2e-15 85.9 76 63.2
Gohir.A06G090050 Gossypium hirsutum HOM05D000533 ORTHO05D002807 2.8e-15 85.5 73 65.8
Lj2C1238G35 Lonicera japonica HOM05D000533 ORTHO05D001069 2.8e-15 85.5 68 70.6
Lsat_1_v5_gn_8_103040 Lactuca sativa HOM05D000533 ORTHO05D002807 4.8e-15 84.7 77 66.2
ATR0043G018 Amborella trichopoda HOM05D000533 ORTHO05D001069 8.2e-15 84.0 68 67.6
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 1.8e-14 82.8 45 88.9
Solyc02g011800.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 3.1e-14 82.0 96 53.1
HanXRQChr01g0000271 Helianthus annuus HOM05D000533 ORTHO05D001069 4.1e-14 81.6 85 61.2
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 2.0e-13 79.3 110 48.2
SabraPtG0005900 Salix brachista HOM05D000533 ORTHO05D001069 2.0e-13 79.3 110 48.2
Psat6g182640 Pisum sativum HOM05D000533 ORTHO05D002807 2.6e-13 79.0 46 82.6
Gohir.1Z049694 Gossypium hirsutum HOM05D000533 ORTHO05D001069 3.4e-13 78.6 110 48.2
Gohir.D11G334151 Gossypium hirsutum HOM05D000533 ORTHO05D001069 7.6e-13 77.4 110 46.4
ATR0924G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 1.0e-12 77.0 110 48.2
Nn7g37744 Nelumbo nucifera HOM05D000533 ORTHO05D002807 1.3e-12 76.6 45 82.2
Gohir.D06G147033 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.7e-12 76.3 48 77.1
BolSC35t60707H Brassica oleracea HOM05D000533 ORTHO05D002807 6.5e-12 74.3 45 82.2
Gohir.A04G053078 Gossypium hirsutum HOM05D000533 ORTHO05D001069 6.5e-12 74.3 66 59.1
AUR62015545 Chenopodium quinoa HOM05D000533 ORTHO05D001069 1.4e-11 73.2 84 52.4
MELO3C031836.2 Cucumis melo HOM05D000533 ORTHO05D002807 1.4e-11 73.2 45 75.6
Lsat_1_v5_gn_1_58461 Lactuca sativa HOM05D000533 ORTHO05D002807 3.2e-11 72.0 59 69.5
Gohir.D08G207450 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.6e-10 69.7 69 63.8
Gorai.009G398900 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.6e-10 69.7 89 47.2
Gorai.003G091000 Gossypium raimondii HOM05D000533 ORTHO05D002807 7.9e-10 67.4 45 73.3
EL10As15g24139 Beta vulgaris HOM05D000533 ORTHO05D002807 1.4e-09 66.6 45 77.8
TPR.G39966 Trifolium pratense HOM05D000533 ORTHO05D002807 3.0e-09 65.5 40 82.5
arahy.Tifrunner.gnm1.ann1.2N2B18 Arachis hypogaea HOM05D008259 ORTHO05D010449 6.7e-09 64.3 37 81.1
Migut.D01386 Erythranthe guttata HOM05D000533 ORTHO05D002807 4.3e-08 61.6 37 83.8
SMO086G0018 Selaginella moellendorffii HOM05D000533 ORTHO05D002807 7.4e-08 60.8 45 64.4
Solyc07g032420.3 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.8e-07 58.9 68 55.9
Sed0023687 Sechium edule HOM05D000533 ORTHO05D002807 8.2e-07 57.4 31 83.9
HanXRQChr17g0557741 Helianthus annuus HOM05D000533 ORTHO05D002807 1.1e-06 57.0 37 78.4
ATR0535G001 Amborella trichopoda HOM05D000533 ORTHO05D002807 1.8e-06 56.2 52 63.5
SGA_v2.0_scaffold150G36657 Striga asiatica HOM05D000533 ORTHO05D002807 6.9e-06 54.3 65 56.9


User provided reference genes

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