Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.2e-67 258.8 134 100.0
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.4e-23 112.1 88 72.7
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.4e-23 112.1 88 72.7
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 5.8e-23 111.3 84 76.2
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 7.5e-23 110.9 102 64.7
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 9.8e-23 110.5 88 71.6
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 1.3e-22 110.2 96 67.7
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.3e-22 110.2 96 68.8
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.3e-22 110.2 96 68.8
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.3e-22 110.2 96 68.8
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.7e-22 109.8 68 89.7
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 1.7e-22 109.8 68 89.7
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 2.9e-22 109.0 88 69.3
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 2.9e-22 109.0 88 70.5
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 6.4e-22 107.8 96 66.7
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 6.4e-22 107.8 88 69.3
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 6.4e-22 107.8 96 66.7
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 8.3e-22 107.5 96 66.7
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 8.3e-22 107.5 88 69.3
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 8.3e-22 107.5 88 68.2
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 8.3e-22 107.5 102 62.7
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 8.3e-22 107.5 88 69.3
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 1.1e-21 107.1 88 68.2
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 1.1e-21 107.1 88 68.2
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.1e-21 107.1 102 61.8
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.4e-21 106.7 96 66.7
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 1.4e-21 106.7 96 66.7
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 1.4e-21 106.7 66 86.4
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 1.4e-21 106.7 88 65.9
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 1.4e-21 106.7 88 65.9
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 1.9e-21 106.3 88 64.8
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 1.9e-21 106.3 88 68.2
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.9e-21 106.3 88 68.2
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 1.9e-21 106.3 96 65.6
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 1.9e-21 106.3 102 60.8
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 1.9e-21 106.3 88 69.3
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 1.9e-21 106.3 88 69.3
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 2.4e-21 105.9 96 65.6
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 2.4e-21 105.9 102 61.8
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 2.4e-21 105.9 100 63.0
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 2.4e-21 105.9 96 65.6
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 3.2e-21 105.5 96 65.6
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 3.2e-21 105.5 96 65.6
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 3.2e-21 105.5 88 67.0
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 3.2e-21 105.5 96 64.6
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 3.2e-21 105.5 96 65.6
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 4.1e-21 105.1 88 67.0
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 4.1e-21 105.1 88 65.9
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 4.1e-21 105.1 96 64.6
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 5.4e-21 104.8 102 59.8
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 5.4e-21 104.8 102 59.8
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 5.4e-21 104.8 88 65.9
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 5.4e-21 104.8 88 64.8
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 7.1e-21 104.4 96 65.6
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 7.1e-21 104.4 88 67.0
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 9.2e-21 104.0 88 65.9
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 9.2e-21 104.0 96 64.6
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 9.2e-21 104.0 96 61.5
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 1.2e-20 103.6 131 48.9
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.2e-20 103.6 96 63.5
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.2e-20 103.6 96 63.5
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 1.2e-20 103.6 96 64.6
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 1.2e-20 103.6 88 65.9
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 1.6e-20 103.2 88 64.8
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 1.6e-20 103.2 88 64.8
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 1.6e-20 103.2 88 63.6
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 1.6e-20 103.2 84 70.2
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 2.1e-20 102.8 102 59.8
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 2.1e-20 102.8 88 65.9
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 2.7e-20 102.4 102 60.8
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 2.7e-20 102.4 88 64.8
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 2.7e-20 102.4 102 60.8
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 2.7e-20 102.4 88 64.8
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 2.7e-20 102.4 102 58.8
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 2.7e-20 102.4 102 60.8
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 2.7e-20 102.4 96 65.6
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 2.7e-20 102.4 96 62.5
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 2.7e-20 102.4 102 60.8
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 3.5e-20 102.1 102 57.8
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 3.5e-20 102.1 88 67.0
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 3.5e-20 102.1 88 67.0
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 4.6e-20 101.7 88 67.0
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 4.6e-20 101.7 88 67.0
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 4.6e-20 101.7 84 70.2
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 4.6e-20 101.7 87 64.4
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 6.0e-20 101.3 88 63.6
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 6.0e-20 101.3 64 85.9
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 7.8e-20 100.9 102 60.8
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 7.8e-20 100.9 96 62.5
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 7.8e-20 100.9 88 65.9
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 7.8e-20 100.9 102 59.8
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 7.8e-20 100.9 102 56.9
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 7.8e-20 100.9 96 62.5
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.0e-19 100.5 88 63.6
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 1.3e-19 100.1 88 62.5
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 1.7e-19 99.8 94 62.8
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.3e-19 99.4 96 61.5
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 2.3e-19 99.4 96 62.5
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 3.0e-19 99.0 102 58.8
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 3.0e-19 99.0 96 60.4
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 3.0e-19 99.0 88 61.4
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 3.9e-19 98.6 102 58.8
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 3.9e-19 98.6 102 58.8
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.9e-19 98.6 96 60.4
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 5.1e-19 98.2 88 62.5
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 6.6e-19 97.8 80 66.2
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 6.6e-19 97.8 65 81.5
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 6.6e-19 97.8 96 61.5
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 6.6e-19 97.8 99 58.6
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 6.6e-19 97.8 99 58.6
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 6.6e-19 97.8 99 58.6
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 6.6e-19 97.8 83 65.1
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 8.6e-19 97.4 96 59.4
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 1.5e-18 96.7 88 62.5
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 2.5e-18 95.9 99 57.6
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 2.5e-18 95.9 88 61.4
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 2.5e-18 95.9 61 85.2
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 3.3e-18 95.5 88 59.1
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 9.5e-18 94.0 96 58.3
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 1.1e-16 90.5 65 75.4
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 1.4e-16 90.1 87 57.5
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 5.2e-16 88.2 83 57.8
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.2e-14 82.8 63 69.8
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 3.7e-14 82.0 83 57.8
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 4.9e-14 81.6 63 71.4
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 4.9e-14 81.6 63 71.4
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 8.4e-14 80.9 85 55.3
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 8.4e-14 80.9 96 53.1
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 2.4e-13 79.3 79 57.0
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 4.1e-13 78.6 89 48.3
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 1.6e-12 76.6 65 60.0
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 2.1e-12 76.3 65 61.5
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 3.5e-12 75.5 64 60.9
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 6.0e-12 74.7 68 57.4
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 6.0e-12 74.7 64 60.9
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.3e-11 72.8 79 51.9
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 3.9e-11 72.0 66 54.5
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 5.1e-11 71.6 63 63.5
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 2.5e-10 69.3 119 40.3
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 7.3e-10 67.8 61 55.7
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 9.6e-10 67.4 83 49.4
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 1.2e-09 67.0 48 75.0
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 1.4e-08 63.5 60 56.7
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 5.2e-08 61.6 62 51.6
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 2.6e-07 59.3 65 49.2
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 4.9e-06 55.1 67 52.2


User provided reference genes

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