Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006369g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 6.4e-109 397.5 213 100.0
Nitab4.5_0000996g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 1.8e-95 352.8 213 90.6
PGSC0003DMG400034312 Solanum tuberosum HOM05D006962 ORTHO05D008696 3.1e-71 272.3 212 73.1
Peaxi162Scf00128g01332 Petunia axillaris HOM05D006962 ORTHO05D008696 6.5e-69 264.6 227 68.3
Solyc05g015640.3 Solanum lycopersicum HOM05D006962 ORTHO05D008696 2.5e-65 252.7 212 69.8
Sopen05g011100 Solanum pennellii HOM05D006962 ORTHO05D008696 1.7e-64 250.0 212 68.4
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 3.8e-53 212.2 159 74.2
Cc11_g17050 Coffea canephora HOM05D006962 ORTHO05D008696 1.4e-31 140.6 229 42.4
Thecc.02G205200 Theobroma cacao HOM05D006962 ORTHO05D008696 6.6e-29 131.7 225 40.4
MSTRG.13306 Avicennia marina HOM05D006962 ORTHO05D008696 1.5e-28 130.6 214 43.9
CSS0033119 Camellia sinensis var. sinensis HOM05D006962 ORTHO05D008696 2.5e-28 129.8 220 40.9
Dinv17575 Davidia involucrata HOM05D006962 ORTHO05D008696 2.8e-27 126.3 232 40.9
QL03p052240 Quercus lobata HOM05D006962 ORTHO05D008696 8.0e-27 124.8 227 38.8
ClCG06G002190 Citrullus lanatus HOM05D006962 ORTHO05D008696 2.6e-25 119.8 209 38.8
HanXRQChr08g0214941 Helianthus annuus HOM05D006962 ORTHO05D008696 3.4e-25 119.4 154 44.8
Gohir.A04G140400 Gossypium hirsutum HOM05D006962 ORTHO05D008696 4.4e-25 119.0 216 38.0
Cfa009377 Carpinus fangiana HOM05D006962 ORTHO05D008696 1.3e-24 117.5 223 39.0
Gohir.D04G183600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 2.2e-24 116.7 216 38.4
MELO3C022311.2 Cucumis melo HOM05D006962 ORTHO05D008696 4.9e-24 115.5 209 37.3
Medtr3g085060 Medicago truncatula HOM05D006962 ORTHO05D008696 1.1e-23 114.4 190 39.5
CiPaw.05G108100 Carya illinoinensis HOM05D006962 ORTHO05D008696 3.2e-23 112.8 225 39.6
CANSAT01G0828 Cannabis sativa HOM05D006962 ORTHO05D008696 7.0e-23 111.7 231 35.5
Gorai.012G176600 Gossypium raimondii HOM05D006962 ORTHO05D008696 7.0e-23 111.7 216 37.5
TWI75G0385 Tripterygium wilfordii HOM05D006962 ORTHO05D008696 2.0e-22 110.2 210 37.6
GSVIVG01010505001 Vitis vinifera HOM05D006962 ORTHO05D008696 2.0e-22 110.2 227 37.9
Lj6g0020338 Lotus japonicus HOM05D006962 ORTHO05D008696 2.7e-22 109.8 200 40.0
Lsat_1_v5_gn_4_641 Lactuca sativa HOM05D006962 ORTHO05D008696 3.5e-22 109.4 220 35.0
Ciclev10032798m.g Citrus clementina HOM05D006962 ORTHO05D008696 4.6e-22 109.0 222 36.5
Glyma.18G005200 Glycine max HOM05D006962 ORTHO05D008696 5.9e-22 108.6 214 37.4
Nn3g16434 Nelumbo nucifera HOM05D006962 ORTHO05D008696 5.9e-22 108.6 223 37.7
Ca_16448_v3 Cicer arietinum L. HOM05D006962 ORTHO05D008696 1.0e-21 107.8 212 38.2
Manes.13G010300 Manihot esculenta HOM05D006962 ORTHO05D008696 1.0e-21 107.8 209 38.8
Psat5g097440 Pisum sativum HOM05D006962 ORTHO05D008696 1.7e-21 107.1 201 39.3
Haze_12436 Corylus avellana HOM05D006962 ORTHO05D008696 2.3e-21 106.7 244 35.7
arahy.Tifrunner.gnm1.ann1.AWLH2F Arachis hypogaea HOM05D006962 ORTHO05D008696 3.0e-21 106.3 217 37.8
TPR.G17769 Trifolium pratense HOM05D006962 ORTHO05D008696 3.0e-21 106.3 176 39.8
CsaV3_6G008260 Cucumis sativus L. HOM05D006962 ORTHO05D008696 3.9e-21 105.9 211 38.4
Phvul.001G262900 Phaseolus vulgaris HOM05D006962 ORTHO05D008696 3.9e-21 105.9 194 36.1
COL.COLO4_20424 Corchorus olitorius HOM05D006962 ORTHO05D008696 5.0e-21 105.5 218 36.2
Eucgr.B03508 Eucalyptus grandis HOM05D006962 ORTHO05D008696 5.0e-21 105.5 221 34.8
Hma1.2p1_0657F.1_g197165 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 6.6e-21 105.1 122 50.0
Hma1.2p1_0967F.1_g242360 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 6.6e-21 105.1 122 50.0
MELO3C032628.2 Cucumis melo HOM05D006962 ORTHO05D008696 8.6e-21 104.8 153 41.2
Potri.003G170700 Populus trichocarpa HOM05D006962 ORTHO05D008696 1.1e-20 104.4 219 34.7
CsaV3_4G003050 Cucumis sativus L. HOM05D006962 ORTHO05D008696 3.3e-20 102.8 211 35.5
ECA234G1956 Erigeron canadensis HOM05D006962 ORTHO05D008696 4.3e-20 102.4 107 47.7
Sc14g0009120 Simmondsia chinensis HOM05D006962 ORTHO05D008696 5.6e-20 102.1 213 37.6
Ah.03g136040 Amaranthus hybridus HOM05D006962 ORTHO05D008696 7.3e-20 101.7 174 40.8
Duzib251G0823 Durio zibethinus HOM05D006962 ORTHO05D008696 7.3e-20 101.7 213 38.0
Sabra03G0124800 Salix brachista HOM05D006962 ORTHO05D008696 1.2e-19 100.9 218 34.9
VMungo1383G1469 Vigna mungo HOM05D006962 ORTHO05D008696 1.2e-19 100.9 204 36.8
TAR629G1477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 1.6e-19 100.5 232 37.1
ClCG07G015460 Citrullus lanatus HOM05D006962 ORTHO05D008696 2.1e-19 100.1 219 34.2
Prupe.1G224100 Prunus persica HOM05D006962 ORTHO05D008696 2.8e-19 99.8 228 36.4
MBI07_g28246_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 6.2e-19 98.6 219 36.1
THA.LOC104807506 Tarenaya hassleriana HOM05D006962 ORTHO05D008696 1.0e-18 97.8 234 35.0
MBI07_g11269_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 1.4e-18 97.4 216 35.6
Sabra01G0041700 Salix brachista HOM05D000660 ORTHO05D000766 1.8e-18 97.1 180 41.7
Sed0011154 Sechium edule HOM05D006962 ORTHO05D008696 1.8e-18 97.1 147 42.9
AUR62028912 Chenopodium quinoa HOM05D006962 ORTHO05D008696 2.3e-18 96.7 172 38.4
Potri.001G057700 Populus trichocarpa HOM05D006962 ORTHO05D008696 3.1e-18 96.3 187 39.0
Cpa.g.sc43.75 Carica papaya HOM05D006962 ORTHO05D008696 5.2e-18 95.5 159 38.4
Rhsim12G0024900 Rhododendron simsii HOM05D006962 ORTHO05D008696 5.2e-18 95.5 195 35.4
Lalb_Chr23g0278151 Lupinus albus HOM05D006962 ORTHO05D008696 6.8e-18 95.1 163 36.8
TAR636G2109 Trochodendron aralioides HOM05D006962 ORTHO05D008696 6.8e-18 95.1 230 36.5
Actinidia08062 Actinidia chinensis HOM05D006962 ORTHO05D008696 1.2e-17 94.4 159 42.8
AL1G40700 Arabidopsis lyrata HOM05D006962 ORTHO05D008696 1.5e-17 94.0 203 35.5
Gohir.A03G124600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.5e-17 94.0 212 35.4
Gohir.D02G147600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.5e-17 94.0 212 34.4
Gorai.005G165400 Gossypium raimondii HOM05D006962 ORTHO05D008696 2.0e-17 93.6 212 35.4
Migut.E00010 Erythranthe guttata HOM05D006962 ORTHO05D008696 3.4e-17 92.8 220 32.7
AUR62005637 Chenopodium quinoa HOM05D006962 ORTHO05D008696 7.5e-17 91.7 183 36.6
PGR102G1052 Punica granatum HOM05D006962 ORTHO05D008696 1.3e-16 90.9 172 41.3
Atru.chr11.2343 Acer truncatum HOM05D006962 ORTHO05D008696 1.7e-16 90.5 133 39.8
Hund25473 Selenicereus undatus HOM05D006962 ORTHO05D008696 1.7e-16 90.5 183 38.8
SGA_v2.0_scaffold87G27164 Striga asiatica HOM05D006962 ORTHO05D008696 3.7e-16 89.4 212 36.8
PSO017G7099 Papaver somniferum HOM05D006962 ORTHO05D008696 2.4e-15 86.7 164 35.4
Glyma.11G251800 Glycine max HOM05D006962 ORTHO05D008696 3.2e-15 86.3 133 37.6
HPP92_023534 Vanilla planifolia HOM05D006962 ORTHO05D008696 3.2e-15 86.3 165 37.6
BcaC05g26545 Brassica carinata HOM05D006962 ORTHO05D008696 4.1e-15 85.9 224 32.6
PSO478G2808 Papaver somniferum HOM05D006962 ORTHO05D008696 5.4e-15 85.5 164 35.4
MD16G1121100 Malus domestica HOM05D006962 ORTHO05D008696 7.0e-15 85.1 211 31.8
BcaC05g26736 Brassica carinata HOM05D006962 ORTHO05D008696 9.2e-15 84.7 225 31.1
BolC5t31319H Brassica oleracea HOM05D006962 ORTHO05D008696 9.2e-15 84.7 224 32.1
BcaNung06812 Brassica carinata HOM05D006962 ORTHO05D008696 1.2e-14 84.3 224 32.6
FvH4_4g23570 Fragaria vesca HOM05D006962 ORTHO05D008696 1.2e-14 84.3 214 36.0
C05p26000 Brassica napus HOM05D006962 ORTHO05D008696 1.6e-14 84.0 224 32.1
C07p17910 Brassica napus HOM05D006962 ORTHO05D008696 1.6e-14 84.0 184 35.3
BolC7t42297H Brassica oleracea HOM05D006962 ORTHO05D008696 2.0e-14 83.6 184 35.3
A09p38640 Brassica napus HOM05D006962 ORTHO05D008696 3.5e-14 82.8 225 31.1
BraA09t39370Z Brassica rapa HOM05D006962 ORTHO05D008696 3.5e-14 82.8 225 31.1
DCAR_007000 Daucus carota HOM05D006962 ORTHO05D008696 3.5e-14 82.8 252 28.6
Aqoxy3G01577 Aquilegia oxysepala HOM05D006962 ORTHO05D008696 3.9e-13 79.3 168 36.3
Gohir.D03G043133 Gossypium hirsutum HOM05D006962 ORTHO05D008696 3.9e-13 79.3 64 56.2
Sp1g23540 Schrenkiella parvula HOM05D006962 ORTHO05D008696 3.9e-13 79.3 211 32.7
Thhalv10008828m.g Eutrema salsugineum HOM05D006962 ORTHO05D008696 6.6e-13 78.6 177 33.9
CARHR026870 Cardamine hirsuta HOM05D006962 ORTHO05D008696 8.6e-13 78.2 214 31.3
RcHm_v2.0_Chr4g0429971 Rosa chinensis HOM05D006962 ORTHO05D008696 1.1e-12 77.8 207 32.9
CDE05G3434 Ceratophyllum demersum HOM05D006962 ORTHO05D008696 1.9e-12 77.0 199 31.7
Carub.0001s2583 Capsella rubella HOM05D006962 ORTHO05D008696 2.5e-12 76.6 209 32.1
ATR0561G196 Amborella trichopoda HOM05D006962 ORTHO05D008696 4.3e-12 75.9 137 32.8
Gorai.003G044100 Gossypium raimondii HOM05D006962 ORTHO05D008696 1.6e-11 73.9 64 56.2
Aa31LG7G9900 Aethionema arabicum HOM05D006962 ORTHO05D008696 3.6e-11 72.8 220 30.5
Os02g0509600 Oryza sativa ssp. japonica HOM05D006962 ORTHO05D008696 4.7e-11 72.4 205 29.3
TAR629G0477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 4.7e-11 72.4 113 43.4
A07p11980 Brassica napus HOM05D006962 ORTHO05D008696 8.1e-11 71.6 176 33.5
BraA07t28983Z Brassica rapa HOM05D006962 ORTHO05D008696 2.3e-10 70.1 164 34.8
BcaB03g14005 Brassica carinata HOM05D006962 ORTHO05D008696 1.5e-09 67.4 224 29.0
AT1G27300 Arabidopsis thaliana HOM05D006962 ORTHO05D008696 2.6e-09 66.6 212 30.7
Zm00001eb180910 Zea mays HOM05D006962 ORTHO05D008696 3.4e-09 66.2 218 27.5
Zm00001eb241800 Zea mays HOM05D006962 ORTHO05D008696 1.3e-08 64.3 209 29.2


User provided reference genes

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