Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 2.2e-201 705.7 419 100.0
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 2.3e-171 605.9 423 87.5
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 2.5e-112 409.8 419 71.1
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 1.6e-111 407.1 413 70.7
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 3.5e-111 406.0 413 70.7
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 7.4e-101 371.7 427 65.3
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 2.3e-94 350.1 422 62.8
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 1.7e-89 334.0 332 62.7
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 2.4e-75 287.0 402 46.5
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 9.1e-67 258.5 405 48.9
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 3.8e-65 253.1 340 54.1
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 1.2e-63 248.1 332 51.2
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 1.8e-62 244.2 334 53.0
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 3.5e-58 229.9 337 51.0
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 1.6e-55 221.1 342 44.7
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 4.7e-55 219.5 334 52.4
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 2.3e-54 217.2 340 49.7
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 4.0e-54 216.5 334 50.0
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 5.2e-54 216.1 330 52.7
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 2.0e-53 214.2 336 48.5
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 2.0e-53 214.2 458 44.8
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 4.4e-53 213.0 330 50.9
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 1.7e-52 211.1 335 49.3
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.7e-52 211.1 430 38.1
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 1.7e-52 211.1 341 50.4
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.1e-51 208.4 322 50.6
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 2.4e-51 207.2 384 44.8
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 9.2e-51 205.3 334 43.4
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 1.6e-50 204.5 331 48.0
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 4.6e-50 203.0 345 46.7
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 3.0e-49 200.3 333 48.9
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 8.6e-49 198.7 331 51.4
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 1.5e-48 198.0 360 47.2
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 7.3e-48 195.7 221 51.6
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 9.5e-48 195.3 339 49.3
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 4.7e-47 193.0 336 45.5
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 5.8e-45 186.0 369 45.0
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 9.8e-45 185.3 329 45.6
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 3.7e-44 183.3 333 47.1
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 1.9e-43 181.0 326 44.5
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 3.2e-43 180.3 323 44.0
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 4.1e-43 179.9 330 38.5
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 4.1e-43 179.9 333 46.5
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 2.7e-42 177.2 336 44.6
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 3.5e-42 176.8 337 45.7
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 3.5e-42 176.8 336 44.6
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 1.3e-41 174.9 331 45.6
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 1.7e-41 174.5 281 50.5
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.7e-41 174.5 347 37.2
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 2.3e-41 174.1 370 41.4
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 8.6e-41 172.2 344 45.9
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 4.3e-40 169.9 370 40.5
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 1.2e-39 168.3 189 51.3
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.6e-39 167.9 370 35.7
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 4.7e-39 166.4 319 46.7
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 8.1e-39 165.6 347 45.0
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 1.4e-38 164.9 346 45.7
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 1.2e-37 161.8 342 41.2
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 2.0e-37 161.0 323 43.3
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 7.5e-37 159.1 319 42.9
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 2.2e-36 157.5 344 46.5
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 6.4e-36 156.0 331 33.2
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 1.4e-35 154.8 335 43.6
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 2.4e-35 154.1 331 41.1
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 5.4e-35 152.9 336 46.1
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 1.6e-34 151.4 332 42.5
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 1.3e-33 148.3 345 44.6
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 5.1e-33 146.4 334 43.7
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 5.6e-32 142.9 331 40.5
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 4.7e-31 139.8 334 34.1
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 1.8e-30 137.9 245 47.8
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 3.1e-30 137.1 330 37.9
MELO3C006372.2 Cucumis melo HOM05D006910 ORTHO05D008937 2.6e-29 134.0 335 39.1
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 3.4e-29 133.7 333 41.7
CsaV3_3G011640 Cucumis sativus L. HOM05D006910 ORTHO05D008937 5.8e-29 132.9 337 33.8
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 2.2e-28 131.0 326 38.7
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 6.4e-28 129.4 359 37.9
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 1.1e-27 128.6 326 39.9
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 3.2e-27 127.1 180 43.9
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 7.1e-27 125.9 373 37.0
ClCG05G003960 Citrullus lanatus HOM05D006910 ORTHO05D008937 1.6e-26 124.8 339 31.9
Sed0015418 Sechium edule HOM05D006910 ORTHO05D008937 7.8e-26 122.5 328 38.1
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 5.6e-24 116.3 226 46.9
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 2.1e-23 114.4 344 37.2
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 1.8e-22 111.3 315 38.7
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 4.0e-22 110.2 203 50.2
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 6.9e-22 109.4 325 29.5
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 6.9e-22 109.4 339 36.3
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 4.4e-21 106.7 320 28.4
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 4.4e-21 106.7 325 29.2
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 7.6e-21 105.9 321 29.3
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 2.9e-20 104.0 115 53.0
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 6.4e-20 102.8 148 46.6
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 1.4e-19 101.7 196 36.7
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 5.4e-19 99.8 211 34.1
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 4.6e-18 96.7 338 38.2
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 1.0e-17 95.5 174 42.5
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.7e-17 94.7 130 43.1
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 5.1e-17 93.2 169 46.2
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 6.6e-17 92.8 154 37.7
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 5.6e-16 89.7 168 37.5
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 9.6e-16 89.0 113 43.4
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 9.6e-16 89.0 342 37.1
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 1.6e-15 88.2 170 42.4
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 2.8e-15 87.4 146 37.0
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 4.8e-15 86.7 166 41.6
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 6.2e-15 86.3 114 42.1
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 8.1e-15 85.9 165 43.6
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 8.1e-15 85.9 192 31.8
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 1.4e-14 85.1 151 34.4
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 1.2e-13 82.0 186 42.5
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 2.0e-13 81.3 134 41.0
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 3.4e-13 80.5 184 31.0
Solyc03g005710.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 1.3e-12 78.6 101 48.5
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 3.8e-12 77.0 109 41.3
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 3.8e-12 77.0 160 34.4
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 3.2e-11 73.9 143 35.0
Rhsim03G0248500 Rhododendron simsii HOM05D001903 ORTHO05D001847 3.2e-11 73.9 80 46.2
EL10Ac2g04227 Beta vulgaris HOM05D001903 ORTHO05D001847 4.2e-11 73.6 77 46.8
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 4.2e-11 73.6 115 40.0
AL2G41400 Arabidopsis lyrata HOM05D001903 ORTHO05D001847 3.5e-10 70.5 153 32.7
Os04g0496700 Oryza sativa ssp. japonica HOM05D001903 ORTHO05D001847 3.5e-10 70.5 72 47.2
Hund26517 Selenicereus undatus HOM05D001903 ORTHO05D001847 1.0e-09 68.9 74 47.3
Cfa010644 Carpinus fangiana HOM05D001903 ORTHO05D001847 1.3e-09 68.6 68 51.5
Aa31LG4G420 Aethionema arabicum HOM05D001903 ORTHO05D001847 3.0e-09 67.4 149 33.6
Nitab4.5_0008073g0040 Nicotiana tabacum HOM05D009844 ORTHO05D007252 3.9e-09 67.0 62 54.8
C08p52150 Brassica napus HOM05D006910 ORTHO05D008937 8.7e-09 65.9 129 33.3
AUR62012392 Chenopodium quinoa HOM05D001903 ORTHO05D001847 8.7e-09 65.9 61 54.1
Nitab4.5_0000373g0030 Nicotiana tabacum HOM05D001903 ORTHO05D001847 1.1e-08 65.5 114 47.4
AT1G80130 Arabidopsis thaliana HOM05D001903 ORTHO05D001847 1.9e-08 64.7 120 34.2
BolC8t52749H Brassica oleracea HOM05D006910 ORTHO05D008937 1.9e-08 64.7 134 33.6
Cpa.g.sc10.261 Carica papaya HOM05D001903 ORTHO05D001847 2.5e-08 64.3 128 34.4
SMO118G0200 Selaginella moellendorffii HOM05D006910 ORTHO05D008937 3.3e-08 63.9 62 46.8
CSS0007043 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 5.6e-08 63.2 43 65.1
GSVIVG01028428001 Vitis vinifera HOM05D006910 ORTHO05D008937 7.4e-08 62.8 48 66.7
Lj9C500G15 Lonicera japonica HOM05D000020 ORTHO05D000543 1.3e-07 62.0 75 46.7
CSS0008588 Camellia sinensis var. sinensis HOM05D001903 ORTHO05D001847 1.6e-07 61.6 72 45.8
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 1.6e-07 61.6 166 36.1
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 2.1e-07 61.2 117 39.3
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 2.8e-07 60.8 100 39.0
Gorai.010G137200 Gossypium raimondii HOM05D001903 ORTHO05D001847 3.7e-07 60.5 73 45.2
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 3.7e-07 60.5 108 38.9
A07p45380 Brassica napus HOM05D001903 ORTHO05D001847 4.8e-07 60.1 97 40.2
Potri.006G254300 Populus trichocarpa HOM05D001903 ORTHO05D001847 4.8e-07 60.1 70 45.7
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 8.1e-07 59.3 89 42.7
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 1.1e-06 58.9 193 27.5
BcaC03g16002 Brassica carinata HOM05D001903 ORTHO05D001847 1.1e-06 58.9 98 40.8
BcaB05g25297 Brassica carinata HOM05D001903 ORTHO05D001847 1.4e-06 58.5 69 46.4
BolC2t09769H Brassica oleracea HOM05D001903 ORTHO05D001847 1.4e-06 58.5 98 40.8
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 1.4e-06 58.5 85 37.6
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 1.8e-06 58.2 84 44.0
C02p37590 Brassica napus HOM05D001903 ORTHO05D001847 2.4e-06 57.8 98 40.8
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 2.4e-06 57.8 84 41.7
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 2.4e-06 57.8 91 47.3
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 2.4e-06 57.8 56 53.6
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 2.4e-06 57.8 117 33.3
Actinidia11375 Actinidia chinensis HOM05D006910 ORTHO05D008937 3.1e-06 57.4 41 65.9
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 3.1e-06 57.4 82 42.7
Gohir.D06G119399 Gossypium hirsutum HOM05D001903 ORTHO05D001847 4.0e-06 57.0 101 34.7
Sp5g35670 Schrenkiella parvula HOM05D001903 ORTHO05D001847 4.0e-06 57.0 160 36.2
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 5.3e-06 56.6 80 45.0
BcaB02g08699 Brassica carinata HOM05D001903 ORTHO05D001847 5.3e-06 56.6 91 40.7
A02p23820 Brassica napus HOM05D001903 ORTHO05D001847 5.3e-06 56.6 93 39.8
BraA02t07373Z Brassica rapa HOM05D001903 ORTHO05D001847 5.3e-06 56.6 93 39.8
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 5.3e-06 56.6 91 38.5
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 5.3e-06 56.6 114 33.3
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 5.3e-06 56.6 88 40.9
Carub.0002s2739 Capsella rubella HOM05D001903 ORTHO05D001847 9.0e-06 55.8 96 39.6
Eucgr.C02775 Eucalyptus grandis HOM05D001903 ORTHO05D001847 9.0e-06 55.8 145 34.5
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 9.0e-06 55.8 76 46.1
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 9.0e-06 55.8 121 33.1


User provided reference genes

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