Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006314g0010 Nicotiana tabacum HOM05D006485 ORTHO05D006108 4.1e-84 316.2 461 100.0
Nitab4.5_0000680g0110 Nicotiana tabacum HOM05D006485 ORTHO05D006108 9.4e-73 278.5 462 92.0
Peaxi162Scf00500g00067 Petunia axillaris HOM05D006485 ORTHO05D006108 4.9e-45 186.4 460 82.8
PGSC0003DMG400002731 Solanum tuberosum HOM05D006485 ORTHO05D006108 2.6e-30 137.5 466 70.6
Sopen09g003560 Solanum pennellii HOM05D006485 ORTHO05D006108 6.4e-21 106.3 482 66.6
Solyc09g008770.3 Solanum lycopersicum HOM05D006485 ORTHO05D006108 2.4e-20 104.4 504 62.1
CAN.G824.55 Capsicum annuum HOM05D006485 ORTHO05D006108 3.3e-17 94.0 91 62.6
DCAR_020791 Daucus carota HOM05D006485 ORTHO05D006108 2.4e-12 77.8 104 48.1
BcaB06g28954 Brassica carinata HOM05D006485 ORTHO05D006108 6.0e-11 73.2 97 45.4
BolC4t28034H Brassica oleracea HOM05D006485 ORTHO05D006108 6.0e-11 73.2 97 45.4
A04p28050 Brassica napus HOM05D006485 ORTHO05D006108 7.8e-11 72.8 97 45.4
C04p65460 Brassica napus HOM05D006485 ORTHO05D006108 7.8e-11 72.8 97 45.4
BcaB06g28951 Brassica carinata HOM05D006485 ORTHO05D006108 1.3e-10 72.0 97 45.4
BraA04t18292Z Brassica rapa HOM05D006485 ORTHO05D006108 1.3e-10 72.0 97 45.4
PGR004G2529 Punica granatum HOM05D006485 ORTHO05D006108 3.0e-10 70.9 90 44.4
Carub.0004s1846 Capsella rubella HOM05D006485 ORTHO05D006108 8.7e-10 69.3 77 54.5
Thhalv10017525m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 1.1e-09 68.9 76 52.6
unitig_746.g26769 Utricularia gibba HOM05D006485 ORTHO05D006108 1.1e-09 68.9 67 58.2
A05p09230 Brassica napus HOM05D006485 ORTHO05D006108 1.5e-09 68.6 73 54.8
DCAR_020790 Daucus carota HOM05D006485 ORTHO05D006108 1.9e-09 68.2 83 51.8
PSO063G6051 Papaver somniferum HOM05D006485 ORTHO05D006108 4.3e-09 67.0 92 45.7
SalBow5G2944 Salvia bowleyana HOM05D006485 ORTHO05D006108 4.3e-09 67.0 130 43.1
TAR623G0376 Trochodendron aralioides HOM05D006485 ORTHO05D006108 4.3e-09 67.0 88 46.6
AT2G36640 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 5.6e-09 66.6 74 51.4
PSO339G3752 Papaver somniferum HOM05D006485 ORTHO05D006108 5.6e-09 66.6 95 44.2
Atru.chr8.1686 Acer truncatum HOM05D006485 ORTHO05D006108 7.3e-09 66.2 75 50.7
BcaB02g08540 Brassica carinata HOM05D006485 ORTHO05D006108 9.6e-09 65.9 74 48.6
Aa31LG5G21840 Aethionema arabicum HOM05D006485 ORTHO05D006108 1.2e-08 65.5 92 42.4
COL.COLO4_22277 Corchorus olitorius HOM05D006485 ORTHO05D006108 1.6e-08 65.1 101 43.6
Atru.chr8.1691 Acer truncatum HOM05D006485 ORTHO05D006108 2.1e-08 64.7 85 48.2
Thecc.05G077700 Theobroma cacao HOM05D006485 ORTHO05D006108 2.1e-08 64.7 84 45.2
TWI53G1251 Tripterygium wilfordii HOM05D006485 ORTHO05D006108 2.1e-08 64.7 122 36.1
Haze_19505 Corylus avellana HOM05D006485 ORTHO05D006108 6.2e-08 63.2 76 48.7
Gorai.009G410100 Gossypium raimondii HOM05D006485 ORTHO05D006108 6.2e-08 63.2 95 47.4
HanXRQChr17g0553261 Helianthus annuus HOM05D006485 ORTHO05D006108 6.2e-08 63.2 82 48.8
FAN05G3442 Fragaria x ananassa HOM05D006485 ORTHO05D006108 8.1e-08 62.8 93 45.2
Gohir.D04G106200 Gossypium hirsutum HOM05D006485 ORTHO05D006108 8.1e-08 62.8 95 47.4
Peaxi162Scf00078g00310 Petunia axillaris HOM05D011389 ORTHO05D006108 8.1e-08 62.8 114 45.6
Sp5g09280 Schrenkiella parvula HOM05D006485 ORTHO05D006108 8.1e-08 62.8 80 48.8
AL4G32820 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 1.1e-07 62.4 90 42.2
Carub.0005s1954 Capsella rubella HOM05D006485 ORTHO05D006108 1.4e-07 62.0 73 47.9
Ciclev10013512m.g Citrus clementina HOM05D006485 ORTHO05D006108 1.4e-07 62.0 74 48.6
Migut.L01738 Erythranthe guttata HOM05D013674 ORTHO05D006108 1.4e-07 62.0 134 34.3
Thhalv10010945m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 1.8e-07 61.6 90 44.4
FAN02G3096 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.8e-07 61.6 139 34.5
Sp4g18920 Schrenkiella parvula HOM05D006485 ORTHO05D006108 1.8e-07 61.6 90 42.2
Hund12313 Selenicereus undatus HOM05D006485 ORTHO05D006108 1.8e-07 61.6 126 38.1
AL5G33870 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 2.4e-07 61.2 78 47.4
A04p06430 Brassica napus HOM05D006485 ORTHO05D006108 2.4e-07 61.2 75 49.3
ClCG10G019560 Citrullus lanatus HOM05D006485 ORTHO05D006108 2.4e-07 61.2 122 39.3
FAN05G4746 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.4e-07 61.2 88 44.3
QL07p041110 Quercus lobata HOM05D006485 ORTHO05D006108 2.4e-07 61.2 100 43.0
C04p39920 Brassica napus HOM05D006485 ORTHO05D006108 3.1e-07 60.8 75 49.3
Peaxi162Scf00078g00039 Petunia axillaris HOM05D011389 ORTHO05D006108 3.1e-07 60.8 114 44.7
MELO3C009418.2 Cucumis melo HOM05D006485 ORTHO05D006108 4.0e-07 60.5 122 36.9
Potri.015G060600 Populus trichocarpa HOM05D006485 ORTHO05D006108 4.0e-07 60.5 75 48.0
AT3G53040 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 5.2e-07 60.1 99 40.4
CSS0031113 Camellia sinensis var. sinensis HOM05D006485 ORTHO05D006108 5.2e-07 60.1 94 43.6
CARHR130920 Cardamine hirsuta HOM05D006485 ORTHO05D006108 5.2e-07 60.1 89 41.6
CARHR162930 Cardamine hirsuta HOM05D006485 ORTHO05D006108 5.2e-07 60.1 101 42.6
Gohir.A04G067600 Gossypium hirsutum HOM05D006485 ORTHO05D006108 5.2e-07 60.1 95 46.3
SGA_v2.0_scaffold277G46722 Striga asiatica HOM05D006485 ORTHO05D006108 5.2e-07 60.1 68 55.9
CiPaw.10G003000 Carya illinoinensis HOM05D006485 ORTHO05D006108 6.9e-07 59.7 107 40.2
Nitab4.5_0011622g0030 Nicotiana tabacum HOM05D011389 ORTHO05D006108 6.9e-07 59.7 110 46.4
FAN09G4412 Fragaria x ananassa HOM05D006485 ORTHO05D006108 9.0e-07 59.3 119 36.1
Cc06_g04960 Coffea canephora HOM05D011389 ORTHO05D006108 1.2e-06 58.9 89 46.1
CSS0004621 Camellia sinensis var. sinensis HOM05D006485 ORTHO05D006108 1.5e-06 58.5 94 44.7
FAN09G1969 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.5e-06 58.5 119 36.1
FAN14G0187 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.5e-06 58.5 119 36.1
Prupe.7G121500 Prunus persica HOM05D006485 ORTHO05D006108 1.5e-06 58.5 98 46.9
THA.LOC104827498 Tarenaya hassleriana HOM05D006485 ORTHO05D006108 1.5e-06 58.5 69 50.7
Cfa020727 Carpinus fangiana HOM05D006485 ORTHO05D006108 2.0e-06 58.2 93 40.9
FvH4_6g17400 Fragaria vesca HOM05D006485 ORTHO05D006108 2.0e-06 58.2 119 36.1
Lsat_1_v5_gn_6_29041 Lactuca sativa HOM05D006485 ORTHO05D006108 2.0e-06 58.2 95 42.1
BraA04t16347Z Brassica rapa HOM05D006485 ORTHO05D006108 2.6e-06 57.8 106 40.6
Lalb_Chr06g0172031 Lupinus albus HOM05D013674 ORTHO05D006108 2.6e-06 57.8 108 41.7
Cfa016504 Carpinus fangiana HOM05D006485 ORTHO05D006108 3.4e-06 57.4 53 50.9
Gohir.D09G139000 Gossypium hirsutum HOM05D006485 ORTHO05D006108 5.8e-06 56.6 129 34.1
Gorai.006G159500 Gossypium raimondii HOM05D006485 ORTHO05D006108 5.8e-06 56.6 129 34.1
Lj3C1005T3 Lonicera japonica HOM05D011389 ORTHO05D006108 5.8e-06 56.6 121 38.0
CANSAT80G1413 Cannabis sativa HOM05D006485 ORTHO05D006108 7.6e-06 56.2 87 43.7
BcaC02g09194 Brassica carinata HOM05D006485 ORTHO05D006108 9.9e-06 55.8 113 38.9
BolC4t25563H Brassica oleracea HOM05D006485 ORTHO05D006108 9.9e-06 55.8 113 38.9
Ca_11604_v3 Cicer arietinum L. HOM05D013674 ORTHO05D006108 9.9e-06 55.8 49 53.1
Ca_12340_v3 Cicer arietinum L. HOM05D013674 ORTHO05D006108 9.9e-06 55.8 49 53.1


User provided reference genes

Program Settings