Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 6.8e-105 384.0 197 100.0
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 7.3e-99 364.0 195 96.4
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 9.8e-88 327.0 197 86.8
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 9.8e-88 327.0 197 86.8
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.1e-86 323.6 197 85.8
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 6.6e-76 287.7 195 80.5
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 4.9e-71 271.6 204 74.0
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 1.1e-70 270.4 201 74.1
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.2e-69 266.9 182 76.4
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 2.7e-69 265.8 196 73.0
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 3.5e-69 265.4 196 73.5
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 7.8e-69 264.2 197 74.1
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 7.8e-69 264.2 301 54.5
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 7.8e-69 264.2 204 71.1
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 7.8e-69 264.2 196 73.0
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.3e-68 263.5 205 70.2
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 8.7e-68 260.8 157 85.4
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 1.5e-67 260.0 205 67.8
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.5e-67 260.0 210 71.4
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 1.9e-67 259.6 186 75.8
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 1.9e-67 259.6 155 82.6
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 2.5e-67 259.2 181 75.1
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 3.3e-67 258.8 195 73.8
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 5.6e-67 258.1 158 81.0
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 1.3e-66 256.9 195 72.3
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.3e-66 256.9 199 73.4
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 1.6e-66 256.5 153 81.7
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 3.6e-66 255.4 195 72.8
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 3.6e-66 255.4 205 69.8
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 4.8e-66 255.0 210 68.1
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 4.8e-66 255.0 210 66.7
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 4.8e-66 255.0 187 74.9
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 6.2e-66 254.6 207 70.5
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 8.1e-66 254.2 194 72.2
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.4e-65 253.4 195 71.3
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 1.4e-65 253.4 200 70.0
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 2.4e-65 252.7 207 70.0
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 2.4e-65 252.7 193 72.0
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 2.4e-65 252.7 192 74.0
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 3.1e-65 252.3 173 75.7
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 3.1e-65 252.3 155 81.9
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 4.0e-65 251.9 219 66.2
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 4.0e-65 251.9 200 68.0
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 4.0e-65 251.9 155 81.3
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 6.9e-65 251.1 200 71.0
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 6.9e-65 251.1 195 71.3
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 9.0e-65 250.8 194 71.1
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 9.0e-65 250.8 199 69.8
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 1.2e-64 250.4 199 71.9
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.2e-64 250.4 194 71.6
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.2e-64 250.4 194 71.6
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 1.5e-64 250.0 195 72.3
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 1.5e-64 250.0 194 71.6
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 2.0e-64 249.6 196 70.4
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 3.4e-64 248.8 195 70.8
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 3.4e-64 248.8 155 78.7
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 4.4e-64 248.4 216 66.2
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 4.4e-64 248.4 199 72.4
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 5.8e-64 248.1 152 80.9
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 5.8e-64 248.1 205 68.3
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 7.6e-64 247.7 209 66.5
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 9.9e-64 247.3 194 71.6
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 9.9e-64 247.3 202 68.8
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 1.3e-63 246.9 211 65.4
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 2.2e-63 246.1 196 71.4
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 2.2e-63 246.1 196 71.4
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 2.2e-63 246.1 196 71.4
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 2.2e-63 246.1 196 71.4
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 2.2e-63 246.1 196 70.9
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 2.2e-63 246.1 214 65.4
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 2.9e-63 245.7 214 65.0
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 2.9e-63 245.7 199 68.3
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 2.9e-63 245.7 197 68.0
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 3.8e-63 245.4 155 80.0
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 4.9e-63 245.0 199 69.3
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 6.4e-63 244.6 206 68.0
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 6.4e-63 244.6 215 67.4
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 8.4e-63 244.2 189 69.3
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.4e-62 243.4 210 65.2
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 2.4e-62 242.7 200 66.5
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 2.4e-62 242.7 199 69.3
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 2.4e-62 242.7 210 67.6
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 3.2e-62 242.3 177 71.8
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 3.2e-62 242.3 198 69.2
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 9.3e-62 240.7 209 65.6
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 2.7e-61 239.2 200 67.0
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.7e-61 239.2 200 67.0
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.7e-61 239.2 200 67.0
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.5e-61 238.8 186 71.0
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.5e-61 238.8 186 71.0
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 6.0e-61 238.0 205 67.3
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.0e-61 238.0 200 67.0
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 7.8e-61 237.7 202 65.8
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.0e-60 237.3 206 67.0
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.0e-60 237.3 200 66.5
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 3.9e-60 235.3 186 68.8
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.9e-60 235.3 200 66.0
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 8.7e-60 234.2 197 65.5
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.5e-59 232.6 200 65.5
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 7.3e-59 231.1 261 55.2
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.3e-58 230.3 209 61.7
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 8.1e-58 227.6 197 63.5
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 1.1e-57 227.3 202 62.9
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 1.8e-57 226.5 184 68.5
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 3.1e-57 225.7 149 75.8
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 2.0e-56 223.0 123 87.8
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.0e-56 223.0 179 67.0
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.4e-56 222.2 229 59.4
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 8.4e-55 217.6 214 60.7
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 4.2e-54 215.3 203 60.1
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 7.1e-54 214.5 204 58.3
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 9.3e-54 214.2 189 61.4
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 2.1e-53 213.0 195 64.1
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.8e-52 209.9 146 71.9
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 7.4e-51 204.5 202 60.9
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 2.1e-50 203.0 122 79.5
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 2.1e-50 203.0 189 60.8
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 8.1e-50 201.1 204 55.9
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.2e-48 197.2 208 57.7
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.2e-48 197.2 208 57.7
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 3.8e-47 192.2 208 53.8
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 8.4e-47 191.0 206 53.4
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 8.4e-47 191.0 102 92.2
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 1.3e-44 183.7 120 75.0
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 2.5e-43 179.5 145 64.1
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 3.7e-42 175.6 160 62.5
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 6.2e-42 174.9 207 52.2
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 1.1e-38 164.1 93 83.9
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 1.5e-35 153.7 112 63.4
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 2.5e-35 152.9 115 63.5
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 7.4e-35 151.4 215 52.1
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.3e-34 150.6 81 91.4
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 3.7e-34 149.1 193 47.2
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 5.3e-33 145.2 115 59.1
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 5.3e-33 145.2 194 46.4
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 9.0e-33 144.4 106 60.4
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 1.9e-30 136.7 94 68.1
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.7e-27 125.2 67 89.6
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.7e-27 125.2 67 89.6
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 6.3e-26 121.7 80 75.0
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.6e-21 107.1 131 55.7
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 4.4e-19 99.0 70 68.6
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 1.2e-16 90.9 143 49.0
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 2.5e-14 83.2 50 78.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 2.5e-14 83.2 164 39.0
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 2.2e-07 60.1 38 76.3
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 3.2e-06 56.2 64 53.1


User provided reference genes

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