Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.6e-172 609.4 322 100.0
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 6.4e-153 544.3 350 86.6
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 1.0e-126 457.2 324 77.8
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 2.3e-126 456.1 332 75.9
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 7.4e-125 451.1 327 75.8
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 7.4e-125 451.1 327 75.8
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 1.1e-112 410.6 327 69.4
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 7.2e-112 407.9 327 69.7
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 1.4e-110 403.7 327 69.4
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 2.3e-110 402.9 327 67.6
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 8.8e-110 401.0 322 69.9
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 1.5e-109 400.2 324 68.8
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 2.0e-109 399.8 327 68.2
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 4.3e-109 398.7 322 68.9
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 1.1e-107 394.0 324 67.3
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 2.4e-107 392.9 344 64.5
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 4.1e-107 392.1 322 67.7
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 1.5e-106 390.2 318 68.2
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 3.4e-106 389.0 322 68.3
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 3.4e-106 389.0 327 66.4
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 2.9e-105 386.0 319 65.8
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 3.8e-105 385.6 327 65.1
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 1.4e-104 383.6 324 64.8
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.5e-104 382.9 320 65.9
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 2.5e-104 382.9 322 67.4
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.2e-104 382.5 322 65.2
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.2e-104 382.5 322 65.2
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 3.2e-104 382.5 324 64.2
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 4.2e-104 382.1 320 65.9
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 4.2e-104 382.1 324 64.2
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 7.2e-104 381.3 322 66.8
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 2.1e-103 379.8 322 64.9
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 7.9e-103 377.9 321 65.1
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 1.0e-102 377.5 321 65.4
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.8e-102 376.7 322 64.3
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 3.0e-102 375.9 322 64.3
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 8.8e-102 374.4 321 63.9
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 1.5e-101 373.6 322 64.3
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 1.5e-101 373.6 322 64.3
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 2.0e-101 373.2 323 65.3
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 7.4e-101 371.3 322 64.3
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 7.4e-101 371.3 322 66.1
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 1.3e-100 370.5 325 64.6
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 1.7e-100 370.2 322 65.8
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.7e-100 370.2 332 63.0
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 2.8e-100 369.4 325 64.6
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 6.3e-100 368.2 321 62.3
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 6.3e-100 368.2 323 63.5
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 1.1e-99 367.5 320 65.0
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 1.4e-99 367.1 322 65.2
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 1.4e-99 367.1 324 62.7
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 1.4e-99 367.1 325 64.3
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.8e-99 366.7 323 63.5
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 2.4e-99 366.3 321 62.6
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 4.1e-99 365.5 322 63.7
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 4.1e-99 365.5 322 65.8
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 4.1e-99 365.5 327 62.1
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 5.3e-99 365.2 322 62.4
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 7.0e-99 364.8 323 63.2
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 9.1e-99 364.4 323 63.2
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 1.2e-98 364.0 322 63.0
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 1.2e-98 364.0 322 63.0
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 1.6e-98 363.6 321 64.5
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 3.5e-98 362.5 322 64.9
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 4.5e-98 362.1 325 62.5
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 4.5e-98 362.1 322 62.4
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 5.9e-98 361.7 322 62.7
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 7.7e-98 361.3 323 62.5
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 1.0e-97 360.9 321 62.3
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 1.0e-97 360.9 321 64.2
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 2.2e-97 359.8 323 62.8
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 2.9e-97 359.4 322 62.4
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 8.5e-97 357.8 322 62.1
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 1.1e-96 357.5 322 61.5
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 1.1e-96 357.5 322 61.8
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 1.5e-96 357.1 322 61.5
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 1.9e-96 356.7 322 61.5
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 1.9e-96 356.7 322 62.1
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 2.5e-96 356.3 321 61.7
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 3.2e-96 355.9 325 62.2
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 4.2e-96 355.5 323 61.3
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 4.2e-96 355.5 321 61.7
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 7.2e-96 354.8 327 61.2
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 1.2e-95 354.0 327 62.4
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 1.6e-95 353.6 322 61.2
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.4e-94 350.5 317 62.5
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 1.8e-94 350.1 325 61.8
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 5.2e-94 348.6 325 60.9
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 6.7e-94 348.2 325 60.9
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 6.7e-94 348.2 325 60.9
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 1.1e-93 347.4 325 60.6
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 1.5e-93 347.1 323 61.0
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 2.0e-93 346.7 323 60.7
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 2.0e-93 346.7 323 60.7
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 4.4e-93 345.5 323 60.7
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 4.4e-93 345.5 323 60.7
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 1.7e-92 343.6 415 51.8
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 3.7e-92 342.4 323 60.4
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.4e-91 339.7 316 60.8
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 2.0e-90 336.7 322 59.3
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 4.5e-90 335.5 322 59.3
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 4.5e-90 335.5 322 59.0
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 4.5e-90 335.5 322 59.3
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 4.5e-90 335.5 322 59.3
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 2.9e-89 332.8 336 57.7
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.9e-89 332.8 490 46.3
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 5.0e-89 332.0 306 61.8
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 8.5e-89 331.3 490 46.1
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 2.5e-88 329.7 317 58.7
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 4.2e-88 328.9 321 57.6
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 9.4e-88 327.8 321 57.6
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 9.4e-88 327.8 318 58.2
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 9.4e-88 327.8 315 56.5
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 6.1e-87 325.1 297 63.0
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 3.7e-84 315.8 329 55.9
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 2.7e-82 309.7 315 54.0
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 6.8e-78 295.0 325 50.2
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 7.0e-75 285.0 320 50.6
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 2.7e-74 283.1 261 62.5
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 3.8e-73 279.3 318 52.2
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 7.3e-72 275.0 313 49.2
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.6e-71 273.9 313 48.6
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 3.0e-70 269.6 316 49.7
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 4.0e-70 269.2 313 49.8
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 2.7e-66 256.5 303 51.5
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 5.9e-66 255.4 312 45.8
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 3.9e-65 252.7 300 50.0
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 3.9e-65 252.7 304 50.7
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 1.1e-64 251.1 331 49.2
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 1.8e-62 243.8 326 43.6
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 3.1e-62 243.0 301 49.2
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 4.0e-62 242.7 170 76.5
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 5.2e-62 242.3 327 45.9
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 6.8e-62 241.9 328 45.4
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 2.0e-61 240.4 300 49.3
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 3.4e-61 239.6 327 45.9
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 2.2e-60 236.9 319 43.3
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 8.3e-60 235.0 296 48.3
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 1.4e-59 234.2 296 47.6
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 8.1e-55 218.4 296 46.6
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 1.2e-53 214.5 145 73.8
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 3.7e-52 209.5 315 43.5
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 8.3e-52 208.4 268 48.9
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 7.1e-51 205.3 294 46.6
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 2.5e-48 196.8 316 39.9
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 7.6e-45 185.3 137 72.3
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.9e-43 180.6 136 69.1
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 7.1e-43 178.7 137 67.9
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-42 177.9 311 40.2
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 9.6e-40 168.3 172 56.4
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 1.6e-39 167.5 297 38.4
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 4.7e-39 166.0 143 60.1
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.4e-38 164.5 154 60.4
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 8.9e-38 161.8 95 87.4
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.2e-35 153.3 136 63.2
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.3e-33 147.9 118 69.5
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 6.6e-33 145.6 419 31.3
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 6.9e-30 135.6 277 36.5
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.2e-29 134.8 142 55.6
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 1.1e-22 111.7 73 82.2
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 2.4e-22 110.5 172 44.2
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 1.1e-19 101.7 322 29.2
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 3.2e-19 100.1 151 41.7
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 1.2e-18 98.2 78 69.2
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 1.6e-18 97.8 311 28.0
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 1.0e-17 95.1 312 27.9
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 1.3e-15 88.2 86 55.8
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.3e-15 88.2 59 76.3
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 4.8e-15 86.3 63 65.1
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 6.2e-15 85.9 70 60.0
CAN.G102.1 Capsicum annuum HOM05D000541 ORTHO05D000137 2.4e-14 84.0 55 76.4
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 2.4e-14 84.0 74 55.4
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 3.1e-14 83.6 58 77.6
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 4.0e-14 83.2 58 75.9
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 4.0e-14 83.2 58 75.9
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 9.0e-14 82.0 58 75.9
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 2.0e-13 80.9 58 75.9
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.6e-13 80.5 64 60.9
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 2.6e-13 80.5 64 60.9
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 1.0e-12 78.6 56 64.3
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 1.7e-12 77.8 56 73.2
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.9e-12 77.0 64 57.8
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 6.5e-12 75.9 60 58.3
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.9e-11 74.3 61 60.7
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 2.1e-07 60.8 48 64.6


User provided reference genes

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