Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 2.3e-279 964.9 479 100.0
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 3.3e-254 881.3 481 91.1
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 4.4e-251 870.9 485 89.9
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 7.6e-251 870.2 485 89.7
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 1.7e-250 869.0 485 89.7
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 7.8e-248 860.1 482 89.8
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 8.4e-242 840.1 481 89.2
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 1.2e-208 729.9 471 77.7
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.6e-208 729.6 478 76.2
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 4.8e-205 718.0 483 74.7
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 8.2e-205 717.2 484 73.3
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.6e-203 712.2 477 73.2
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.5e-203 711.8 480 75.6
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 1.7e-202 709.5 469 74.6
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 3.8e-202 708.4 467 73.9
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 6.5e-202 707.6 469 74.4
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.5e-201 706.4 473 73.4
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.5e-201 706.4 478 73.0
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 7.2e-201 704.1 473 72.7
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 2.1e-200 702.6 558 65.8
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 4.7e-200 701.4 474 73.2
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 8.0e-200 700.7 469 74.2
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 6.7e-199 697.6 462 76.0
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 8.8e-199 697.2 468 74.8
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 1.1e-198 696.8 478 73.2
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 4.4e-198 694.9 486 70.6
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 9.7e-198 693.7 469 74.4
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.3e-197 693.3 476 73.1
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 1.3e-197 693.3 467 73.4
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 2.2e-197 692.6 480 72.3
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 1.8e-196 689.5 470 72.8
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 3.1e-196 688.7 474 72.6
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 4.1e-196 688.3 475 72.2
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 5.3e-196 688.0 473 71.7
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 4.5e-195 684.9 481 70.9
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 5.9e-195 684.5 479 71.6
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 1.3e-194 683.3 475 71.6
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 3.8e-194 681.8 484 72.1
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 3.8e-194 681.8 470 72.3
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 6.5e-194 681.0 481 71.1
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 1.5e-193 679.9 482 70.7
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.9e-193 679.5 470 70.9
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.5e-193 679.1 470 71.7
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 2.5e-193 679.1 477 71.9
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 3.2e-193 678.7 473 72.5
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 5.5e-193 677.9 470 71.7
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.2e-192 676.8 470 71.7
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 1.6e-192 676.4 470 72.1
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 2.1e-192 676.0 476 71.2
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 3.6e-192 675.2 459 73.4
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 3.6e-192 675.2 481 70.3
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 8.0e-192 674.1 473 71.2
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 1.0e-191 673.7 471 70.5
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 4.0e-191 671.8 471 71.5
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 8.8e-191 670.6 470 70.6
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.0e-190 669.5 471 70.1
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 7.5e-190 667.5 470 70.6
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 9.8e-190 667.2 475 69.9
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 6.3e-189 664.5 476 70.0
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 7.7e-187 657.5 470 70.2
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.3e-186 656.8 449 71.9
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 5.0e-186 654.8 491 68.6
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 6.5e-186 654.4 470 69.6
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.5e-185 653.3 454 71.1
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 2.1e-184 649.4 432 75.5
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 3.6e-184 648.7 475 69.5
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 1.7e-181 639.8 475 67.2
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 4.9e-181 638.3 435 73.8
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 1.8e-180 636.3 467 69.2
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 2.9e-178 629.0 471 67.7
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 2.9e-178 629.0 480 67.1
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 3.8e-178 628.6 469 68.0
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 5.0e-178 628.2 471 68.4
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 8.0e-176 620.9 472 67.6
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 1.0e-175 620.5 477 67.3
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 1.0e-175 620.5 483 67.5
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 1.8e-175 619.8 475 66.5
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 3.0e-175 619.0 475 66.3
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.0e-175 619.0 471 67.1
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 4.0e-175 618.6 475 67.8
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 1.2e-174 617.1 480 66.2
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.5e-174 616.7 477 66.5
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 1.8e-172 609.8 470 66.8
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 2.4e-172 609.4 470 66.2
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 9.2e-172 607.4 429 70.4
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 1.6e-171 606.7 472 66.5
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 2.7e-171 605.9 469 66.3
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 7.8e-171 604.4 478 65.3
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.7e-170 603.2 470 66.4
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 1.7e-170 603.2 478 65.5
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 1.7e-170 603.2 478 65.5
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 1.7e-170 603.2 478 65.7
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 2.9e-170 602.4 531 62.5
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 3.9e-170 602.1 496 63.3
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 6.6e-170 601.3 477 65.8
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 8.6e-170 600.9 478 65.7
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 1.1e-169 600.5 472 65.7
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 9.5e-169 597.4 412 70.9
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 8.0e-168 594.3 479 63.5
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.8e-167 593.2 471 64.8
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.5e-166 590.1 516 58.7
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 1.5e-166 590.1 468 64.5
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 1.2e-163 580.5 473 66.0
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 2.5e-161 572.8 449 65.9
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 6.8e-159 564.7 470 63.2
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 2.0e-158 563.1 414 68.1
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.4e-156 557.0 417 69.3
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 6.4e-149 531.6 479 62.0
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 8.4e-149 531.2 366 72.1
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.4e-148 530.4 479 58.2
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 9.2e-148 527.7 517 55.7
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 4.3e-145 518.8 462 60.8
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.6e-144 515.8 354 71.8
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.5e-142 510.4 477 58.7
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 1.7e-141 506.9 493 55.2
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 2.1e-136 490.0 476 57.1
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.3e-133 480.7 364 67.0
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 5.8e-126 455.3 474 51.7
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 2.8e-120 436.4 547 45.0
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 6.3e-112 408.7 459 49.9
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 6.3e-104 382.1 268 68.7
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 5.7e-97 359.0 327 62.1
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.4e-95 354.4 234 76.1
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 1.0e-93 348.2 309 58.3
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 6.3e-88 328.9 482 43.2
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 3.0e-82 310.1 382 45.0
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.9e-78 295.8 290 60.0
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 5.9e-78 295.8 266 59.4
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.3e-72 278.1 200 67.0
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 2.5e-68 263.8 482 35.9
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.7e-64 251.1 252 57.9
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 7.0e-63 245.7 272 48.5
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.2e-59 235.0 462 36.4
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 2.8e-59 233.8 458 36.9
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 3.6e-59 233.4 508 34.3
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 2.5e-52 210.7 174 63.2
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.1e-47 193.4 291 42.3
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.3e-45 187.6 178 56.7
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.3e-44 183.7 111 79.3
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 2.8e-43 180.6 202 51.0
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.6e-43 180.3 111 77.5
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 8.1e-43 179.1 111 78.4
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 1.1e-42 178.7 208 49.5
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 4.1e-39 166.8 199 50.3
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.2e-38 165.2 105 74.3
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 1.2e-35 155.2 118 65.3
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 5.2e-34 149.8 111 67.6
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 1.3e-32 145.2 129 59.7
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 1.2e-30 138.7 122 58.2
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.0e-29 135.6 202 44.1
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.6e-27 128.3 67 89.6
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 4.7e-27 126.7 116 57.8
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 7.6e-25 119.4 96 63.5
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 2.3e-21 107.8 125 50.4
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 1.8e-18 98.2 64 70.3
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 3.3e-12 77.4 49 73.5
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 3.1e-10 70.9 57 59.6
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 2.6e-09 67.8 45 71.1
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 2.6e-09 67.8 42 76.2
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 2.4e-07 61.2 46 54.3
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 3.2e-07 60.8 44 70.5
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 4.2e-07 60.5 44 70.5


User provided reference genes

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