Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.2e-32 141.7 74 100.0
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 5.4e-31 137.1 74 98.6
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.5e-28 129.0 74 91.9
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 1.7e-24 115.5 74 83.8
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 6.4e-24 113.6 74 78.4
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 8.4e-24 113.2 74 81.1
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.2e-22 109.4 75 78.7
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 1.3e-21 105.9 71 78.9
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 3.0e-21 104.8 74 75.7
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 3.0e-21 104.8 74 77.0
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 3.9e-21 104.4 77 74.0
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 5.1e-21 104.0 72 76.4
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 5.1e-21 104.0 74 75.7
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 6.6e-21 103.6 74 78.4
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 8.7e-21 103.2 74 75.7
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 8.7e-21 103.2 72 75.0
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 8.7e-21 103.2 73 75.3
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 1.1e-20 102.8 72 75.0
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 1.5e-20 102.4 73 74.0
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 1.5e-20 102.4 71 73.2
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 1.9e-20 102.1 62 83.9
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 2.5e-20 101.7 72 75.0
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 3.3e-20 101.3 66 78.8
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 3.3e-20 101.3 74 73.0
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 3.3e-20 101.3 74 73.0
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 4.3e-20 100.9 71 76.1
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 4.3e-20 100.9 71 76.1
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 5.6e-20 100.5 74 73.0
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 5.6e-20 100.5 74 70.3
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 5.6e-20 100.5 72 76.4
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 7.3e-20 100.1 72 75.0
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 7.3e-20 100.1 74 70.3
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 7.3e-20 100.1 72 73.6
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 9.6e-20 99.8 74 73.0
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 9.6e-20 99.8 71 77.5
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.3e-19 99.4 75 73.3
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.3e-19 99.4 74 70.3
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.3e-19 99.4 74 70.3
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 1.3e-19 99.4 71 71.8
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 1.3e-19 99.4 71 71.8
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 1.3e-19 99.4 77 70.1
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 1.6e-19 99.0 71 71.8
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.6e-19 99.0 58 82.8
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 1.6e-19 99.0 74 71.6
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 2.1e-19 98.6 72 72.2
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 2.1e-19 98.6 72 70.8
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 2.8e-19 98.2 75 72.0
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 2.8e-19 98.2 63 77.8
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 3.6e-19 97.8 72 72.2
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 3.6e-19 97.8 75 69.3
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 3.6e-19 97.8 71 71.8
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 4.8e-19 97.4 72 70.8
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 6.2e-19 97.1 63 77.8
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 6.2e-19 97.1 58 82.8
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 6.2e-19 97.1 70 70.0
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 8.1e-19 96.7 70 72.9
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 1.1e-18 96.3 71 69.0
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 1.1e-18 96.3 74 70.3
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 1.4e-18 95.9 69 73.9
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 1.4e-18 95.9 71 69.0
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 1.4e-18 95.9 74 71.6
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 1.4e-18 95.9 66 77.3
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 1.8e-18 95.5 64 76.6
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 1.8e-18 95.5 64 76.6
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 1.8e-18 95.5 58 79.3
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 1.8e-18 95.5 55 83.6
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 1.8e-18 95.5 63 77.8
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 2.4e-18 95.1 73 71.2
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 2.4e-18 95.1 71 73.2
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.4e-18 95.1 71 70.4
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 2.4e-18 95.1 64 75.0
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 2.4e-18 95.1 70 68.6
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 3.1e-18 94.7 72 72.2
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 3.1e-18 94.7 64 75.0
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 4.0e-18 94.4 55 80.0
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 4.0e-18 94.4 71 69.0
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 4.0e-18 94.4 70 70.0
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 5.3e-18 94.0 65 75.4
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 5.3e-18 94.0 71 70.4
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 5.3e-18 94.0 74 66.2
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 5.3e-18 94.0 74 66.2
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 6.9e-18 93.6 74 70.3
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 6.9e-18 93.6 60 78.3
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 6.9e-18 93.6 79 65.8
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 9.0e-18 93.2 72 66.7
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 1.2e-17 92.8 71 69.0
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 1.2e-17 92.8 59 76.3
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 2.0e-17 92.0 55 81.8
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 2.6e-17 91.7 64 73.4
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 2.6e-17 91.7 54 79.6
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 2.6e-17 91.7 58 77.6
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 2.6e-17 91.7 71 63.4
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 3.4e-17 91.3 59 78.0
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 3.4e-17 91.3 62 75.8
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 3.4e-17 91.3 59 74.6
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 4.5e-17 90.9 62 75.8
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 4.5e-17 90.9 59 78.0
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 4.5e-17 90.9 55 80.0
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 4.5e-17 90.9 73 68.5
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 5.8e-17 90.5 71 70.4
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 5.8e-17 90.5 71 70.4
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 7.6e-17 90.1 64 71.9
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 9.9e-17 89.7 68 72.1
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 9.9e-17 89.7 62 74.2
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 9.9e-17 89.7 62 74.2
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 9.9e-17 89.7 59 76.3
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 9.9e-17 89.7 69 72.5
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 9.9e-17 89.7 68 69.1
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 1.3e-16 89.4 68 70.6
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 1.3e-16 89.4 71 70.4
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 1.7e-16 89.0 62 74.2
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 1.7e-16 89.0 67 67.2
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 1.7e-16 89.0 55 78.2
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 2.2e-16 88.6 58 79.3
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 2.2e-16 88.6 68 66.2
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 2.9e-16 88.2 69 68.1
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 2.9e-16 88.2 55 80.0
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 3.8e-16 87.8 58 75.9
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 4.9e-16 87.4 58 75.9
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 4.9e-16 87.4 55 76.4
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 4.9e-16 87.4 55 76.4
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 4.9e-16 87.4 55 76.4
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 6.4e-16 87.0 65 66.2
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 6.4e-16 87.0 58 72.4
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 6.4e-16 87.0 67 65.7
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 1.4e-15 85.9 64 65.6
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 1.4e-15 85.9 57 77.2
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 1.9e-15 85.5 55 74.5
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 1.9e-15 85.5 66 66.7
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 3.2e-15 84.7 64 67.2
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 4.2e-15 84.3 55 74.5
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 1.2e-14 82.8 56 80.4
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 1.6e-14 82.4 74 62.2
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.3e-13 79.3 73 58.9
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 1.8e-13 79.0 58 72.4
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 3.9e-13 77.8 69 63.8
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 6.7e-13 77.0 68 57.4
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.1e-12 76.3 69 60.9
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.1e-12 76.3 69 60.9
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 1.5e-12 75.9 69 60.9
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 1.9e-12 75.5 66 62.1
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 2.5e-12 75.1 71 53.5
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 3.3e-12 74.7 58 63.8
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 4.3e-12 74.3 56 71.4
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 4.3e-12 74.3 61 59.0
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 2.1e-11 72.0 54 64.8
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 2.8e-11 71.6 50 76.0
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 8.1e-11 70.1 55 63.6
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 8.1e-11 70.1 55 63.6
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 8.1e-11 70.1 40 85.0
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 3.1e-10 68.2 68 51.5
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 4.0e-10 67.8 59 64.4
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 1.2e-09 66.2 66 51.5
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 1.5e-09 65.9 70 44.3


User provided reference genes

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