Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 0.0e+00 1170.6 614 100.0
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 0.0e+00 1095.1 614 94.8
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 2.6e-304 1048.1 581 94.1
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 2.4e-302 1041.6 581 94.1
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 1.1e-299 1032.7 581 92.8
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 4.3e-299 1030.8 581 92.4
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 3.6e-298 1027.7 581 92.3
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 1.8e-260 902.5 578 81.8
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 3.2e-254 881.7 600 78.0
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 7.2e-254 880.6 576 79.0
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 2.0e-251 872.5 575 78.6
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 7.4e-251 870.5 579 78.4
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.8e-249 865.9 576 78.6
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 2.4e-249 865.5 580 77.2
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 4.1e-249 864.8 598 77.1
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 2.2e-247 859.0 580 76.6
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 2.9e-247 858.6 597 76.2
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 5.0e-247 857.8 580 76.6
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 6.5e-247 857.4 580 76.6
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 6.5e-247 857.4 565 77.9
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 6.5e-247 857.4 575 77.2
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.9e-246 855.9 580 76.4
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 4.2e-246 854.7 604 74.0
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 7.2e-246 854.0 580 76.6
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 1.2e-245 853.2 578 76.3
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 1.0e-244 850.1 578 78.2
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 3.0e-244 848.6 569 77.2
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 5.2e-244 847.8 573 76.1
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 2.0e-243 845.9 571 76.9
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 2.6e-243 845.5 568 76.9
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 7.5e-243 844.0 580 75.2
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 1.3e-242 843.2 577 76.6
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 2.8e-242 842.0 570 77.0
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 3.7e-242 841.6 566 76.5
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 4.8e-242 841.3 575 76.7
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 8.2e-242 840.5 566 76.5
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 3.1e-241 838.6 579 76.2
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 3.1e-241 838.6 580 75.3
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 7.0e-241 837.4 576 75.5
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 9.1e-241 837.0 511 84.3
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 2.7e-240 835.5 584 75.0
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 2.7e-240 835.5 576 74.8
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 5.9e-240 834.3 568 75.5
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 7.7e-240 833.9 584 75.9
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 7.7e-240 833.9 568 76.2
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 1.3e-239 833.2 581 74.4
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 1.3e-239 833.2 566 76.1
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 1.3e-239 833.2 602 72.8
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.7e-239 832.8 562 77.8
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 2.2e-239 832.4 577 75.4
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 2.9e-239 832.0 570 74.9
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 5.0e-239 831.2 582 74.6
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 8.5e-239 830.5 568 77.8
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 8.5e-239 830.5 568 76.4
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 1.1e-238 830.1 573 75.2
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 1.5e-238 829.7 581 74.2
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 1.5e-238 829.7 573 75.4
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 1.9e-238 829.3 581 74.4
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.5e-238 828.9 568 76.8
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 3.2e-238 828.6 583 74.6
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 3.2e-238 828.6 565 75.8
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 3.2e-238 828.6 565 75.9
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 4.2e-238 828.2 564 76.4
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 4.2e-238 828.2 565 75.2
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 9.4e-238 827.0 565 75.0
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.2e-237 826.6 576 74.8
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.7e-237 825.5 576 74.7
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 3.6e-237 825.1 576 74.0
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 3.6e-237 825.1 576 75.0
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 4.7e-237 824.7 571 74.4
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 4.7e-237 824.7 580 75.0
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 4.7e-237 824.7 573 74.7
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 6.1e-237 824.3 571 74.3
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 1.8e-236 822.8 566 75.6
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 4.0e-236 821.6 576 73.8
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 6.8e-236 820.8 569 75.4
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 8.8e-236 820.5 566 75.3
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 8.8e-236 820.5 560 74.8
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.2e-235 820.1 564 75.5
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.0e-235 819.3 568 75.7
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 2.0e-235 819.3 584 74.1
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 2.6e-235 818.9 570 74.2
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 2.6e-235 818.9 572 74.0
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 3.4e-235 818.5 565 74.2
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 3.4e-235 818.5 568 75.7
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 3.4e-235 818.5 584 74.1
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 3.4e-235 818.5 553 76.1
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 5.7e-235 817.8 570 73.7
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 5.7e-235 817.8 563 75.3
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 5.7e-235 817.8 582 73.2
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 1.3e-234 816.6 563 75.0
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 1.3e-234 816.6 564 75.2
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.2e-234 815.8 578 76.6
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 2.7e-232 808.9 551 75.7
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 2.3e-231 805.8 508 81.5
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 3.8e-231 805.1 581 72.6
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 6.6e-231 804.3 563 75.3
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 1.1e-230 803.5 580 73.8
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 1.5e-230 803.1 565 74.2
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 1.5e-230 803.1 578 74.4
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 9.5e-230 800.4 580 72.1
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 1.6e-229 799.7 584 71.7
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 3.6e-229 798.5 554 76.5
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 2.3e-228 795.8 602 70.3
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 5.2e-228 794.7 580 72.2
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 8.3e-226 787.3 577 72.3
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 1.8e-225 786.2 688 62.2
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 5.4e-225 784.6 589 69.3
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 9.2e-225 783.9 564 73.0
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 2.9e-223 778.9 679 63.6
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 8.6e-223 777.3 564 72.7
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.1e-214 750.4 578 70.6
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 4.3e-214 748.4 575 68.3
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 5.4e-209 731.5 595 66.4
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 2.7e-208 729.2 576 67.5
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 4.6e-208 728.4 535 70.5
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 3.1e-204 715.7 578 65.7
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 1.7e-202 709.9 567 65.6
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 2.1e-200 703.0 488 75.0
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 1.3e-194 683.7 522 68.2
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 8.1e-189 664.5 576 62.3
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 9.3e-185 651.0 433 79.2
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 3.5e-176 622.5 449 73.1
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 4.6e-176 622.1 507 68.8
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.8e-173 612.1 478 67.2
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 6.1e-160 568.5 534 60.1
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 5.7e-150 535.4 352 79.5
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 1.3e-149 534.3 372 73.9
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 1.8e-140 503.8 519 52.4
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 3.6e-136 489.6 305 84.3
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.2e-133 480.3 400 67.2
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.7e-130 470.7 560 54.1
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 2.3e-119 433.7 314 73.2
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 2.5e-113 413.7 252 82.9
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 1.8e-108 397.5 509 46.4
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 4.6e-99 366.3 571 41.7
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.2e-93 347.4 231 80.1
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 1.9e-92 344.4 230 76.1
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.0e-79 300.1 205 74.6
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 7.1e-76 289.3 210 69.5
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 2.1e-64 251.1 260 53.5
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 5.8e-62 243.0 320 43.4
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 1.8e-47 194.9 124 79.0
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 4.5e-46 190.3 255 43.1
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 1.4e-36 158.7 129 65.1
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 1.4e-31 142.1 137 59.9
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.2e-21 108.2 250 38.4
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 8.5e-21 106.3 94 56.4
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 9.4e-20 102.8 92 57.6
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 5.2e-18 97.1 82 63.4
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 4.4e-17 94.0 52 86.5
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 4.4e-17 94.0 52 86.5
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 4.4e-17 94.0 187 38.0
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 7.5e-17 93.2 50 86.0
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 1.0e-13 82.8 65 69.2
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 1.2e-11 75.9 70 58.6
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 1.2e-11 75.9 71 57.7
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.7e-11 73.9 65 63.1
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 1.4e-10 72.4 71 56.3
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 2.6e-09 68.2 60 58.3
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 2.2e-08 65.1 30 93.3
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 2.2e-08 65.1 30 93.3
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 2.8e-08 64.7 57 50.9
COL.COLO4_16027 Corchorus olitorius HOM05D004172 ORTHO05D159660 1.2e-06 59.3 51 68.6
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 2.7e-06 58.2 247 29.1
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 3.5e-06 57.8 57 43.9


User provided reference genes

Program Settings