Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 2.9e-85 318.5 165 100.0
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 2.2e-80 302.4 165 94.5
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 9.8e-65 250.4 172 76.7
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 4.9e-64 248.1 172 76.2
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 2.4e-63 245.7 172 75.6
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 2.5e-52 209.1 166 74.1
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 6.4e-40 167.9 147 70.7
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 1.0e-37 160.6 181 56.4
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 1.2e-33 147.1 175 51.4
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 4.4e-33 145.2 166 53.6
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 6.4e-32 141.4 166 54.2
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 9.3e-31 137.5 174 48.9
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 2.3e-29 132.9 187 46.5
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 6.6e-29 131.3 162 48.1
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 4.3e-28 128.6 175 48.0
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 7.3e-28 127.9 164 47.0
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 2.1e-27 126.3 188 47.9
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 2.1e-27 126.3 167 48.5
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 4.8e-27 125.2 164 47.6
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 3.1e-26 122.5 110 60.0
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 4.0e-26 122.1 89 68.5
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 5.3e-26 121.7 102 64.7
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 6.9e-26 121.3 88 68.2
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 1.2e-25 120.6 109 61.5
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 1.2e-25 120.6 119 54.6
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 1.5e-25 120.2 107 59.8
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 1.5e-25 120.2 165 46.7
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 1.5e-25 120.2 167 47.3
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 1.5e-25 120.2 148 48.6
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 2.6e-25 119.4 82 74.4
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 4.5e-25 118.6 110 60.0
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 4.5e-25 118.6 122 54.1
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 4.5e-25 118.6 88 68.2
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 7.6e-25 117.9 104 59.6
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 1.3e-24 117.1 84 67.9
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 1.7e-24 116.7 170 46.5
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 2.2e-24 116.3 115 56.5
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 2.2e-24 116.3 110 62.7
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 2.2e-24 116.3 167 45.5
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 2.9e-24 115.9 99 62.6
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 2.9e-24 115.9 107 61.7
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 3.8e-24 115.5 82 69.5
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 3.8e-24 115.5 180 45.6
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 6.4e-24 114.8 90 66.7
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 6.4e-24 114.8 89 61.8
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 8.4e-24 114.4 95 64.2
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 1.1e-23 114.0 115 55.7
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 1.1e-23 114.0 149 47.7
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 1.4e-23 113.6 174 43.7
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 1.4e-23 113.6 80 72.5
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 1.9e-23 113.2 114 55.3
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 1.9e-23 113.2 103 57.3
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 2.4e-23 112.8 113 54.9
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 2.4e-23 112.8 103 55.3
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 4.2e-23 112.1 115 53.9
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 5.4e-23 111.7 80 70.0
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 5.4e-23 111.7 79 69.6
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 5.4e-23 111.7 79 69.6
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 5.4e-23 111.7 171 46.8
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 5.4e-23 111.7 103 62.1
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 9.3e-23 110.9 166 43.4
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 9.3e-23 110.9 80 68.8
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 9.3e-23 110.9 90 61.1
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 1.2e-22 110.5 151 49.7
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 1.2e-22 110.5 90 63.3
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 1.2e-22 110.5 89 61.8
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 1.6e-22 110.2 80 68.8
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 1.6e-22 110.2 147 46.3
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 2.1e-22 109.8 115 53.9
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 2.1e-22 109.8 91 59.3
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.7e-22 109.4 171 46.2
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 2.7e-22 109.4 171 46.2
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 3.5e-22 109.0 81 67.9
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 6.0e-22 108.2 79 70.9
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 7.9e-22 107.8 115 54.8
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 7.9e-22 107.8 115 54.8
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 7.9e-22 107.8 116 52.6
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 7.9e-22 107.8 116 52.6
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 7.9e-22 107.8 89 60.7
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 1.0e-21 107.5 115 54.8
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 1.0e-21 107.5 154 46.1
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 1.0e-21 107.5 84 64.3
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 1.0e-21 107.5 151 46.4
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 1.3e-21 107.1 170 41.8
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 3.0e-21 105.9 81 66.7
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 3.0e-21 105.9 80 68.8
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 3.0e-21 105.9 105 52.4
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 3.9e-21 105.5 115 53.0
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 5.1e-21 105.1 158 45.6
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 5.1e-21 105.1 164 44.5
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 5.1e-21 105.1 162 43.8
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 5.1e-21 105.1 176 42.6
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 6.7e-21 104.8 107 49.5
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 1.1e-20 104.0 121 50.4
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 1.1e-20 104.0 113 52.2
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 1.5e-20 103.6 80 60.0
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 1.9e-20 103.2 83 62.7
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 3.3e-20 102.4 90 57.8
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 3.3e-20 102.4 93 52.7
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 3.3e-20 102.4 75 69.3
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 4.3e-20 102.1 80 63.8
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 4.3e-20 102.1 80 63.8
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 5.6e-20 101.7 115 50.4
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 5.6e-20 101.7 77 67.5
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 5.6e-20 101.7 93 53.8
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 7.4e-20 101.3 80 62.5
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 1.3e-19 100.5 80 62.5
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 1.3e-19 100.5 103 51.5
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 1.6e-19 100.1 106 51.9
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 3.6e-19 99.0 156 41.7
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 4.8e-19 98.6 84 56.0
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 1.1e-18 97.4 104 51.9
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 1.1e-18 97.4 90 54.4
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 1.1e-18 97.4 113 51.3
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 1.1e-18 97.4 164 40.9
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 1.4e-18 97.1 83 59.0
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 1.4e-18 97.1 83 59.0
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 1.8e-18 96.7 93 59.1
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 5.3e-18 95.1 162 42.6
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 6.9e-18 94.7 90 51.1
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 3.4e-17 92.4 83 56.6
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 4.5e-17 92.0 160 41.2
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 5.8e-17 91.7 80 56.2
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 7.6e-17 91.3 83 55.4
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 9.9e-17 90.9 82 51.2
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 9.9e-17 90.9 71 66.2
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 2.2e-16 89.7 164 39.6
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 2.2e-16 89.7 152 40.8
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 3.8e-16 89.0 164 39.6
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 4.2e-15 85.5 79 54.4
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 5.5e-15 85.1 80 55.0
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 9.3e-15 84.3 91 50.5
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 9.3e-15 84.3 91 50.5
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 2.1e-14 83.2 76 61.8
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 2.1e-14 83.2 76 61.8
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 2.7e-14 82.8 106 44.3
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 3.5e-14 82.4 82 53.7
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.8e-13 80.1 90 50.0
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 2.3e-13 79.7 87 50.6
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 2.3e-13 79.7 101 44.6
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 8.1e-11 71.2 80 46.2
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 9.0e-10 67.8 134 35.8
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 5.8e-09 65.1 75 45.3
Ah.08g214580 Amaranthus hybridus HOM05D005289 ORTHO05D006346 4.9e-08 62.0 95 40.0
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 1.1e-07 60.8 151 31.8


User provided reference genes

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