Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006213g0060 Nicotiana tabacum HOM05D003040 ORTHO05D003443 4.1e-63 244.6 126 100.0
Peaxi162Scf00286g00236 Petunia axillaris HOM05D003040 ORTHO05D003443 1.4e-34 149.8 126 69.8
Peaxi162Scf00378g00633 Petunia axillaris HOM05D003040 ORTHO05D003443 7.1e-31 137.5 122 59.8
PGSC0003DMG400021621 Solanum tuberosum HOM05D003040 ORTHO05D003443 1.1e-28 130.2 162 52.5
CAN.G710.53 Capsicum annuum HOM05D003040 ORTHO05D003443 2.1e-27 125.9 170 52.9
Haze_11716 Corylus avellana HOM05D003040 ORTHO05D003443 9.9e-25 117.1 161 46.6
PGSC0003DMG402004586 Solanum tuberosum HOM05D003040 ORTHO05D003443 1.7e-24 116.3 157 45.9
QL10p044472 Quercus lobata HOM05D003040 ORTHO05D003443 4.9e-24 114.8 160 48.1
CAN.G484.127 Capsicum annuum HOM05D003040 ORTHO05D003443 1.4e-23 113.2 158 44.9
Sopen12g033470 Solanum pennellii HOM05D003040 ORTHO05D003443 1.4e-23 113.2 159 45.3
Nn1g09813 Nelumbo nucifera HOM05D003040 ORTHO05D003443 1.9e-23 112.8 158 49.4
TAR636G3649 Trochodendron aralioides HOM05D003040 ORTHO05D003443 1.6e-22 109.8 156 48.1
CiPaw.01G109100 Carya illinoinensis HOM05D003040 ORTHO05D003443 3.5e-22 108.6 161 45.3
Nitab4.5_0000978g0160 Nicotiana tabacum HOM05D003040 ORTHO05D003443 4.6e-22 108.2 121 53.7
Nitab4.5_0006519g0010 Nicotiana tabacum HOM05D003040 ORTHO05D003443 4.6e-22 108.2 121 53.7
PGR083G1221 Punica granatum HOM05D003040 ORTHO05D003443 7.8e-22 107.5 167 43.1
Potri.013G086600 Populus trichocarpa HOM05D003040 ORTHO05D003443 1.0e-21 107.1 162 46.9
Cfa008707 Carpinus fangiana HOM05D003040 ORTHO05D003443 2.3e-21 105.9 70 77.1
Glyma.18G283500 Glycine max HOM05D003040 ORTHO05D003443 8.7e-21 104.0 76 73.7
Aqoxy2G04067 Aquilegia oxysepala HOM05D003040 ORTHO05D003443 1.1e-20 103.6 169 43.8
Glyma.08G259300 Glycine max HOM05D003040 ORTHO05D003443 4.3e-20 101.7 76 75.0
CiPaw.07G079700 Carya illinoinensis HOM05D003040 ORTHO05D003443 5.6e-20 101.3 164 40.2
Duzib268G1790 Durio zibethinus HOM05D003040 ORTHO05D003443 5.6e-20 101.3 156 42.3
Sabra02G0178100 Salix brachista HOM05D003040 ORTHO05D003443 5.6e-20 101.3 170 41.2
Hma1.2p1_0412F.1_g147250 Hydrangea macrophylla HOM05D003040 ORTHO05D003443 7.3e-20 100.9 154 42.9
EL10Ac3g07394 Beta vulgaris HOM05D003040 ORTHO05D003443 1.3e-19 100.1 118 47.5
Duzib268G1117 Durio zibethinus HOM05D003040 ORTHO05D003443 1.3e-19 100.1 158 41.8
Dinv22709 Davidia involucrata HOM05D003040 ORTHO05D003443 1.6e-19 99.8 165 44.8
Solyc09g098425.1 Solanum lycopersicum HOM05D003040 ORTHO05D003443 1.6e-19 99.8 161 47.8
Cc03_g10850 Coffea canephora HOM05D003040 ORTHO05D003443 2.1e-19 99.4 177 39.5
Potri.002G233400 Populus trichocarpa HOM05D003040 ORTHO05D003443 2.8e-19 99.0 169 40.8
MBI11_g07423_MAGBIO Magnolia biondii HOM05D003040 ORTHO05D003443 3.6e-19 98.6 154 46.1
CSS0003515 Camellia sinensis var. sinensis HOM05D003040 ORTHO05D003443 4.8e-19 98.2 75 70.7
GSVIVG01031660001 Vitis vinifera HOM05D003040 ORTHO05D003443 4.8e-19 98.2 150 42.7
QL01p048572 Quercus lobata HOM05D003040 ORTHO05D003443 6.2e-19 97.8 161 42.2
Sc25g0005640 Simmondsia chinensis HOM05D003040 ORTHO05D003443 6.2e-19 97.8 151 43.7
TPR.G2917 Trifolium pratense HOM05D003040 ORTHO05D003443 8.1e-19 97.4 153 43.1
Eucgr.H00463 Eucalyptus grandis HOM05D003040 ORTHO05D003443 1.1e-18 97.1 167 41.9
Potri.014G147000 Populus trichocarpa HOM05D003040 ORTHO05D003443 1.4e-18 96.7 166 41.0
Psat3g189120 Pisum sativum HOM05D003040 ORTHO05D003443 1.8e-18 96.3 153 43.1
Phvul.008G018000 Phaseolus vulgaris HOM05D003040 ORTHO05D003443 2.4e-18 95.9 104 57.7
Sabra19G0062800 Salix brachista HOM05D003040 ORTHO05D003443 3.1e-18 95.5 140 44.3
VMungo1383G1471 Vigna mungo HOM05D003040 ORTHO05D003443 3.1e-18 95.5 69 75.4
COL.COLO4_05703 Corchorus olitorius HOM05D003040 ORTHO05D003443 4.0e-18 95.1 157 40.8
Dinv09885 Davidia involucrata HOM05D003040 ORTHO05D003443 6.9e-18 94.4 159 40.3
Lj1g0021745 Lotus japonicus HOM05D003040 ORTHO05D003443 6.9e-18 94.4 69 73.9
vmacro00570 Vaccinium macrocarpon HOM05D003040 ORTHO05D003443 6.9e-18 94.4 165 41.2
Medtr7g021660 Medicago truncatula HOM05D003040 ORTHO05D003443 1.5e-17 93.2 69 72.5
Prupe.1G177300 Prunus persica HOM05D003040 ORTHO05D003443 2.0e-17 92.8 165 44.8
Hund07342 Selenicereus undatus HOM05D003040 ORTHO05D003443 2.0e-17 92.8 168 39.9
Migut.N00459 Erythranthe guttata HOM05D003040 ORTHO05D003443 2.6e-17 92.4 151 43.0
Oeu007221.1 Olea europaea HOM05D003040 ORTHO05D003443 2.6e-17 92.4 72 65.3
Potri.019G053300 Populus trichocarpa HOM05D003040 ORTHO05D003443 2.6e-17 92.4 161 42.2
TAR365G0675 Trochodendron aralioides HOM05D003040 ORTHO05D003443 3.4e-17 92.0 72 69.4
CSS0033054 Camellia sinensis var. sinensis HOM05D003040 ORTHO05D003443 5.8e-17 91.3 174 40.8
AUR62020938 Chenopodium quinoa HOM05D003040 ORTHO05D003443 5.8e-17 91.3 177 36.2
Ah.13g077600 Amaranthus hybridus HOM05D000425 ORTHO05D007728 7.6e-17 90.9 70 65.7
Manes.12G006100 Manihot esculenta HOM05D003040 ORTHO05D003443 1.3e-16 90.1 160 40.0
Sabra13G0077300 Salix brachista HOM05D003040 ORTHO05D003443 1.3e-16 90.1 133 44.4
TWI09G0779 Tripterygium wilfordii HOM05D003040 ORTHO05D003443 1.3e-16 90.1 161 40.4
MSTRG.24594 Avicennia marina HOM05D003040 ORTHO05D003443 1.7e-16 89.7 152 37.5
MD04G1027900 Malus domestica HOM05D003040 ORTHO05D003443 2.2e-16 89.4 168 42.9
Rhsim09G0035800 Rhododendron simsii HOM05D003040 ORTHO05D003443 2.9e-16 89.0 174 41.4
Ciclev10012906m.g Citrus clementina HOM05D003040 ORTHO05D003443 4.9e-16 88.2 169 37.9
Lj3A380G19 Lonicera japonica HOM05D003040 ORTHO05D003443 4.9e-16 88.2 161 42.2
Lsat_1_v5_gn_2_48200 Lactuca sativa HOM05D003040 ORTHO05D003443 6.4e-16 87.8 142 42.3
HanXRQChr10g0293921 Helianthus annuus HOM05D003040 ORTHO05D003443 1.1e-15 87.0 157 38.2
Thecc.04G192600 Theobroma cacao HOM05D003040 ORTHO05D003443 1.1e-15 87.0 155 39.4
MBI07_g04009_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D010091 1.4e-15 86.7 69 59.4
Sopen09g036360 Solanum pennellii HOM05D003040 ORTHO05D003443 4.2e-15 85.1 154 44.8
Duzib151G0919 Durio zibethinus HOM05D003040 ORTHO05D003443 5.4e-15 84.7 150 39.3
Atru.chr12.1791 Acer truncatum HOM05D003040 ORTHO05D003443 9.3e-15 84.0 177 37.3
ATR0308G001 Amborella trichopoda HOM05D003040 ORTHO05D003443 1.2e-14 83.6 148 40.5
CANSAT54G0604 Cannabis sativa HOM05D003040 ORTHO05D003443 1.6e-14 83.2 158 38.0
Dinv29107 Davidia involucrata HOM05D003040 ORTHO05D003443 1.6e-14 83.2 163 39.9
Lalb_Chr02g0144521 Lupinus albus HOM05D003040 ORTHO05D003443 2.1e-14 82.8 150 40.0
DCAR_027482 Daucus carota HOM05D003040 ORTHO05D003443 2.7e-14 82.4 63 66.7
ECA238G0291 Erigeron canadensis HOM05D003040 ORTHO05D003443 6.0e-14 81.3 69 60.9
Sed0022991 Sechium edule HOM05D003040 ORTHO05D003443 6.0e-14 81.3 160 39.4
Actinidia35925 Actinidia chinensis HOM05D003040 ORTHO05D003443 7.9e-14 80.9 151 40.4
Haze_04549 Corylus avellana HOM05D003040 ORTHO05D003443 1.3e-13 80.1 169 39.1
MD04G1244300 Malus domestica HOM05D003040 ORTHO05D003443 1.3e-13 80.1 190 34.2
Prupe.6G360900 Prunus persica HOM05D003040 ORTHO05D003443 1.3e-13 80.1 172 36.6
Glyma.18G241600 Glycine max HOM05D003040 ORTHO05D003443 2.3e-13 79.3 155 37.4
GSVIVG01019115001 Vitis vinifera HOM05D003040 ORTHO05D003443 3.9e-13 78.6 146 39.0
FAN07G1530 Fragaria x ananassa HOM05D003040 ORTHO05D003443 6.6e-13 77.8 162 40.1
FAN22G2136 Fragaria x ananassa HOM05D003040 ORTHO05D003443 8.7e-13 77.4 162 40.1
RcHm_v2.0_Chr4g0410351 Rosa chinensis HOM05D003040 ORTHO05D003443 8.7e-13 77.4 160 38.8
Duzib128G0697 Durio zibethinus HOM05D003040 ORTHO05D003443 1.5e-12 76.6 167 38.3
Migut.F01874 Erythranthe guttata HOM05D003040 ORTHO05D003443 1.5e-12 76.6 155 38.1
Phvul.008G054500 Phaseolus vulgaris HOM05D003040 ORTHO05D003443 1.9e-12 76.3 153 35.9
Lj3C387T5 Lonicera japonica HOM05D003040 ORTHO05D003443 2.5e-12 75.9 67 62.7
FvH4_4g12280 Fragaria vesca HOM05D003040 ORTHO05D003443 3.3e-12 75.5 72 59.7
FAN12G3503 Fragaria x ananassa HOM05D003040 ORTHO05D003443 3.3e-12 75.5 72 59.7
MSTRG.328 Avicennia marina HOM05D003040 ORTHO05D003443 5.6e-12 74.7 166 35.5
Sc16g0010350 Simmondsia chinensis HOM05D003040 ORTHO05D003443 5.6e-12 74.7 144 38.9
HPP92_000352 Vanilla planifolia HOM05D003040 ORTHO05D003443 5.6e-12 74.7 143 40.6
EL10Ac4g09973 Beta vulgaris HOM05D003040 ORTHO05D003443 7.4e-12 74.3 164 36.6
FAN17G1608 Fragaria x ananassa HOM05D003040 ORTHO05D003443 9.6e-12 73.9 76 55.3
MSTRG.8213 Avicennia marina HOM05D003040 ORTHO05D003443 1.3e-11 73.6 160 35.6
CANSAT78G2083 Cannabis sativa HOM05D003040 ORTHO05D003443 1.3e-11 73.6 180 35.0
Gohir.D02G020100 Gossypium hirsutum HOM05D003040 ORTHO05D003443 1.3e-11 73.6 99 45.5
HPP92_000419 Vanilla planifolia HOM05D003040 ORTHO05D003443 1.3e-11 73.6 143 39.9
Gorai.005G025300 Gossypium raimondii HOM05D003040 ORTHO05D003443 1.6e-11 73.2 99 45.5
Thecc.05G199700 Theobroma cacao HOM05D003040 ORTHO05D003443 1.6e-11 73.2 166 38.6
FAN12G1098 Fragaria x ananassa HOM05D003040 ORTHO05D003443 2.1e-11 72.8 72 58.3
SalBow6G3639 Salvia bowleyana HOM05D003040 ORTHO05D003443 3.6e-11 72.0 63 63.5
TPR.G30349 Trifolium pratense HOM05D003040 ORTHO05D003443 3.6e-11 72.0 152 35.5
Migut.F02119 Erythranthe guttata HOM05D003040 ORTHO05D003443 4.8e-11 71.6 155 35.5
Lj1g0018351 Lotus japonicus HOM05D003040 ORTHO05D003443 4.8e-11 71.6 158 34.8
Nitab4.5_0001653g0110 Nicotiana tabacum HOM05D003040 ORTHO05D003443 4.8e-11 71.6 150 38.0
SalBow6G3188 Salvia bowleyana HOM05D003040 ORTHO05D003443 4.8e-11 71.6 156 37.2
Ca_07978_v3 Cicer arietinum L. HOM05D003040 ORTHO05D003443 6.2e-11 71.2 142 36.6
Glyma.09G250900 Glycine max HOM05D003040 ORTHO05D003443 8.1e-11 70.9 155 36.1
Gohir.A02G017900 Gossypium hirsutum HOM05D003040 ORTHO05D003443 1.4e-10 70.1 99 44.4
Medtr7g079870 Medicago truncatula HOM05D003040 ORTHO05D003443 1.4e-10 70.1 148 35.1
Cfa006269 Carpinus fangiana HOM05D003040 ORTHO05D003443 1.8e-10 69.7 76 55.3
Gohir.A05G391300 Gossypium hirsutum HOM05D003040 ORTHO05D003443 1.8e-10 69.7 181 34.8
Gohir.D04G025900 Gossypium hirsutum HOM05D003040 ORTHO05D003443 1.8e-10 69.7 181 34.8
Gorai.012G028500 Gossypium raimondii HOM05D003040 ORTHO05D003443 1.8e-10 69.7 181 34.8
arahy.Tifrunner.gnm1.ann1.D458E1 Arachis hypogaea HOM05D003040 ORTHO05D003443 5.3e-10 68.2 184 35.9
arahy.Tifrunner.gnm1.ann1.EIQ915 Arachis hypogaea HOM05D003040 ORTHO05D003443 5.3e-10 68.2 184 35.9
TWI36G0037 Tripterygium wilfordii HOM05D003040 ORTHO05D003443 6.9e-10 67.8 161 37.3
TWI75G0608 Tripterygium wilfordii HOM05D003040 ORTHO05D003443 6.9e-10 67.8 171 36.3
Duzib177G0951 Durio zibethinus HOM05D003040 ORTHO05D003443 1.2e-09 67.0 168 36.3
Lalb_Chr10g0092111 Lupinus albus HOM05D003040 ORTHO05D003443 1.5e-09 66.6 157 35.0
SGA_v2.0_scaffold122G33178 Striga asiatica HOM05D003040 ORTHO05D003443 2.6e-09 65.9 170 35.3
ECA232G2830 Erigeron canadensis HOM05D003040 ORTHO05D003443 3.4e-09 65.5 146 37.0
A09p38560 Brassica napus HOM05D003040 ORTHO05D003443 5.8e-09 64.7 86 47.7
AUR62000315 Chenopodium quinoa HOM05D000001 ORTHO05D010091 7.6e-09 64.3 171 35.1
FAN14G2832 Fragaria x ananassa HOM05D003040 ORTHO05D003443 7.6e-09 64.3 156 33.3
Duzib106G1609 Durio zibethinus HOM05D003040 ORTHO05D003443 9.9e-09 63.9 148 37.8
ClCG08G003690 Citrullus lanatus HOM05D003040 ORTHO05D003443 1.7e-08 63.2 67 56.7
Nitab4.5_0006595g0010 Nicotiana tabacum HOM05D003040 ORTHO05D003443 1.7e-08 63.2 142 37.3
SalBow1G6107 Salvia bowleyana HOM05D000001 ORTHO05D010091 1.7e-08 63.2 150 34.7
BraA02t05329Z Brassica rapa HOM05D003040 ORTHO05D003443 2.2e-08 62.8 139 38.1
ClCG03G010790 Citrullus lanatus HOM05D003040 ORTHO05D003443 2.2e-08 62.8 130 36.9
Eucgr.H01387 Eucalyptus grandis HOM05D003040 ORTHO05D003443 2.2e-08 62.8 151 35.1
FvH4_6g00540 Fragaria vesca HOM05D003040 ORTHO05D003443 2.2e-08 62.8 152 32.2
AL6G27430 Arabidopsis lyrata HOM05D003040 ORTHO05D003443 2.9e-08 62.4 143 37.1
Sopen11g004660 Solanum pennellii HOM05D003040 ORTHO05D003443 3.8e-08 62.0 143 38.5
C05p26080 Brassica napus HOM05D003040 ORTHO05D003443 4.9e-08 61.6 86 46.5
BolC2t06757H Brassica oleracea HOM05D003040 ORTHO05D003443 4.9e-08 61.6 148 33.8
HanXRQChr02g0039671 Helianthus annuus HOM05D003040 ORTHO05D003443 4.9e-08 61.6 126 37.3
Sp1g23600 Schrenkiella parvula HOM05D003040 ORTHO05D003443 4.9e-08 61.6 109 38.5
C02p08390 Brassica napus HOM05D003040 ORTHO05D003443 6.4e-08 61.2 148 34.5
Cc09_g03590 Coffea canephora HOM05D003040 ORTHO05D003443 6.4e-08 61.2 166 35.5
MELO3C010062.2 Cucumis melo HOM05D003040 ORTHO05D003443 6.4e-08 61.2 130 36.2
Lsat_1_v5_gn_9_48880 Lactuca sativa HOM05D003040 ORTHO05D003443 8.4e-08 60.8 157 34.4
Sp6g27670 Schrenkiella parvula HOM05D003040 ORTHO05D003443 8.4e-08 60.8 134 35.8
Nitab4.5_0002233g0050 Nicotiana tabacum HOM05D003040 ORTHO05D003443 1.4e-07 60.1 152 32.9
PGR031G3166 Punica granatum HOM05D003040 ORTHO05D003443 1.4e-07 60.1 124 34.7
A02p03580 Brassica napus HOM05D003040 ORTHO05D003443 1.9e-07 59.7 138 34.8
Nitab4.5_0001308g0120 Nicotiana tabacum HOM05D003040 ORTHO05D003443 1.9e-07 59.7 153 35.3
SHI13724 Sapria himalayana HOM05D003040 ORTHO05D003443 1.9e-07 59.7 120 32.5
Solyc11g008880.2 Solanum lycopersicum HOM05D003040 ORTHO05D003443 1.9e-07 59.7 135 37.8
Zm00001eb364700 Zea mays HOM05D003040 ORTHO05D003443 1.9e-07 59.7 117 36.8
AT5G16490 Arabidopsis thaliana HOM05D003040 ORTHO05D003443 2.4e-07 59.3 143 36.4
Cpa.g.c26337.4 Carica papaya HOM05D003040 ORTHO05D003443 2.4e-07 59.3 152 36.8
CsaV3_1G044570 Cucumis sativus L. HOM05D003040 ORTHO05D003443 2.4e-07 59.3 34 76.5
Zm00001eb169890 Zea mays HOM05D003040 ORTHO05D003443 2.4e-07 59.3 62 48.4
BcaC03g18495 Brassica carinata HOM05D003040 ORTHO05D003443 4.2e-07 58.5 143 33.6
RcHm_v2.0_Chr3g0447931 Rosa chinensis HOM05D003040 ORTHO05D003443 4.2e-07 58.5 172 32.6
HPP92_025248 Vanilla planifolia HOM05D003040 ORTHO05D003443 4.2e-07 58.5 82 52.4
THA.LOC104802951 Tarenaya hassleriana HOM05D003040 ORTHO05D003443 5.5e-07 58.2 137 34.3
THA.LOC104820915 Tarenaya hassleriana HOM05D003040 ORTHO05D003443 7.1e-07 57.8 143 35.7
BcaB03g13990 Brassica carinata HOM05D003040 ORTHO05D003443 1.2e-06 57.0 108 36.1
Thhalv10014939m.g Eutrema salsugineum HOM05D003040 ORTHO05D003443 1.2e-06 57.0 133 33.8
PSO357G0622 Papaver somniferum HOM05D003040 ORTHO05D003443 1.2e-06 57.0 127 33.9
Manes.13G005800 Manihot esculenta HOM05D003040 ORTHO05D003443 1.6e-06 56.6 166 35.5
Peaxi162Scf00048g00136 Petunia axillaris HOM05D003040 ORTHO05D003443 1.6e-06 56.6 144 35.4
Lsat_1_v5_gn_1_69541 Lactuca sativa HOM05D003040 ORTHO05D003443 2.1e-06 56.2 107 43.0
PSO170G3622 Papaver somniferum HOM05D003040 ORTHO05D003443 2.1e-06 56.2 126 34.9
PGSC0003DMG400016167 Solanum tuberosum HOM05D003040 ORTHO05D003443 2.1e-06 56.2 153 34.6
A07p11880 Brassica napus HOM05D003040 ORTHO05D003443 2.7e-06 55.8 117 33.3
Carub.0006s1469 Capsella rubella HOM05D003040 ORTHO05D003443 2.7e-06 55.8 148 35.1
BcaC01g06956 Brassica carinata HOM05D003040 ORTHO05D003443 3.5e-06 55.5 137 34.3
HanXRQChr01g0021741 Helianthus annuus HOM05D003040 ORTHO05D003443 3.5e-06 55.5 56 57.1
Lsat_1_v5_gn_2_17620 Lactuca sativa HOM05D003040 ORTHO05D003443 3.5e-06 55.5 175 32.0
Lalb_Chr03g0038441 Lupinus albus HOM05D003040 ORTHO05D003443 3.5e-06 55.5 149 28.9
Oeu062050.1 Olea europaea HOM05D003040 ORTHO05D003443 3.5e-06 55.5 179 31.3
Aa31LG11G13170 Aethionema arabicum HOM05D003040 ORTHO05D003443 4.6e-06 55.1 136 34.6
Os11g0472600 Oryza sativa ssp. japonica HOM05D003040 ORTHO05D003443 4.6e-06 55.1 79 46.8
CARHR026960 Cardamine hirsuta HOM05D003040 ORTHO05D003443 6.0e-06 54.7 118 35.6
COL.COLO4_27384 Corchorus olitorius HOM05D003040 ORTHO05D003443 6.0e-06 54.7 151 35.8
Zm00001eb143410 Zea mays HOM05D003040 ORTHO05D000873 6.0e-06 54.7 54 46.3


User provided reference genes

Program Settings