Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 8.3e-82 307.4 202 100.0
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.5e-46 190.3 213 56.8
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 6.4e-42 174.9 213 52.6
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 8.4e-42 174.5 213 52.6
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 8.4e-42 174.5 213 51.6
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 9.3e-41 171.0 213 50.7
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 9.3e-41 171.0 213 50.7
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 2.1e-40 169.9 213 50.7
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 3.5e-40 169.1 215 49.8
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 3.5e-40 169.1 213 50.2
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 3.5e-40 169.1 213 50.7
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 6.0e-40 168.3 213 50.2
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 7.8e-40 167.9 213 50.2
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 7.8e-40 167.9 213 50.2
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 1.0e-39 167.5 213 49.8
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 1.0e-39 167.5 213 50.2
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 1.3e-39 167.2 213 49.8
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 1.3e-39 167.2 213 49.8
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 1.7e-39 166.8 213 49.8
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 2.3e-39 166.4 213 49.8
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 2.3e-39 166.4 213 48.8
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 3.9e-39 165.6 213 49.3
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 3.9e-39 165.6 213 49.8
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 5.1e-39 165.2 213 49.3
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 5.1e-39 165.2 213 48.8
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 6.6e-39 164.9 217 49.8
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 6.6e-39 164.9 213 49.3
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 6.6e-39 164.9 213 49.3
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 6.6e-39 164.9 213 49.3
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 8.7e-39 164.5 213 48.8
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 1.1e-38 164.1 213 48.8
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 1.1e-38 164.1 213 48.8
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 1.1e-38 164.1 213 48.8
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 1.1e-38 164.1 213 48.8
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 1.1e-38 164.1 213 48.4
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 1.1e-38 164.1 213 49.3
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 1.5e-38 163.7 213 48.8
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 1.9e-38 163.3 213 48.8
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 1.9e-38 163.3 213 48.8
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 2.5e-38 162.9 213 48.4
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 2.5e-38 162.9 213 48.4
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 2.5e-38 162.9 213 48.4
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 2.5e-38 162.9 213 48.8
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 2.5e-38 162.9 213 49.8
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 3.3e-38 162.5 213 48.8
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 3.3e-38 162.5 213 46.9
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 3.3e-38 162.5 213 48.4
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 3.3e-38 162.5 213 48.4
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 3.3e-38 162.5 213 48.4
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 3.3e-38 162.5 213 47.4
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 4.3e-38 162.2 213 48.4
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 5.6e-38 161.8 213 48.4
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 5.6e-38 161.8 213 48.8
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 5.6e-38 161.8 213 48.8
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 9.6e-38 161.0 222 47.3
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 9.6e-38 161.0 213 47.9
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 9.6e-38 161.0 239 46.9
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 1.3e-37 160.6 213 46.5
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 1.6e-37 160.2 213 47.9
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 1.6e-37 160.2 213 47.9
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 1.6e-37 160.2 213 47.9
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 2.1e-37 159.8 215 47.0
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 2.1e-37 159.8 213 47.9
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 2.1e-37 159.8 213 47.9
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 2.1e-37 159.8 213 46.5
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 2.8e-37 159.5 229 46.3
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 2.8e-37 159.5 213 47.4
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 2.8e-37 159.5 213 47.9
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 2.8e-37 159.5 213 47.9
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 2.8e-37 159.5 213 47.4
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 2.8e-37 159.5 213 47.4
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 3.6e-37 159.1 213 49.3
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 3.6e-37 159.1 213 47.4
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 3.6e-37 159.1 213 48.4
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 4.8e-37 158.7 213 47.4
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 4.8e-37 158.7 213 47.9
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 6.2e-37 158.3 213 47.9
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 6.2e-37 158.3 213 47.4
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 6.2e-37 158.3 213 46.9
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 6.2e-37 158.3 213 46.9
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 8.1e-37 157.9 213 46.5
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 8.1e-37 157.9 213 48.4
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 1.1e-36 157.5 213 46.9
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 1.4e-36 157.1 213 47.4
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 1.8e-36 156.8 213 47.4
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 2.4e-36 156.4 213 47.4
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 2.4e-36 156.4 213 47.4
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 3.1e-36 156.0 213 46.9
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 3.1e-36 156.0 213 45.5
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 3.1e-36 156.0 213 46.5
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 4.0e-36 155.6 213 46.5
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 4.0e-36 155.6 213 46.5
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 4.0e-36 155.6 213 46.5
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 4.0e-36 155.6 213 46.5
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 4.0e-36 155.6 213 46.0
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 5.3e-36 155.2 213 46.0
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 6.9e-36 154.8 205 48.8
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 6.9e-36 154.8 213 46.5
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 6.9e-36 154.8 213 46.9
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 6.9e-36 154.8 213 45.5
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 2.0e-35 153.3 213 45.5
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 2.0e-35 153.3 213 44.6
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 2.0e-35 153.3 213 45.5
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 2.6e-35 152.9 213 45.5
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 2.6e-35 152.9 213 44.6
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 2.6e-35 152.9 213 46.5
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 4.4e-35 152.1 246 42.7
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 5.8e-35 151.8 213 45.1
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 5.8e-35 151.8 213 46.0
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 1.3e-34 150.6 213 44.6
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 2.2e-34 149.8 213 45.1
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 2.9e-34 149.4 213 45.5
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 8.4e-34 147.9 213 46.0
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 8.4e-34 147.9 211 46.0
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 1.1e-33 147.5 157 54.1
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 1.1e-33 147.5 157 54.1
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.2e-32 144.1 236 41.1
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 1.6e-32 143.7 170 52.4
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.7e-32 142.9 236 40.7
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.7e-32 142.9 236 40.7
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.7e-32 142.9 236 40.7
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.7e-32 142.9 236 40.7
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 4.6e-32 142.1 240 39.6
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 4.6e-32 142.1 234 43.2
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 1.3e-31 140.6 213 43.2
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 6.6e-31 138.3 213 42.3
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 8.7e-31 137.9 213 43.7
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 8.7e-31 137.9 211 43.6
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 1.3e-29 134.0 188 44.1
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 4.0e-28 129.0 213 39.9
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 5.3e-28 128.6 214 40.2
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 1.6e-21 107.1 240 35.4
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 2.8e-21 106.3 194 39.7
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 2.8e-21 106.3 224 36.2
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 8.1e-21 104.8 92 63.0
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 4.2e-17 92.4 91 58.2
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 9.3e-17 91.3 203 35.0
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 3.5e-16 89.4 199 34.2
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 3.0e-15 86.3 192 35.9
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 2.8e-13 79.7 210 31.4
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 2.0e-11 73.6 80 50.0
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 5.8e-11 72.0 89 49.4
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 2.9e-10 69.7 46 71.7
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 3.8e-10 69.3 47 70.2
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 3.2e-09 66.2 43 76.7
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 2.7e-08 63.2 65 53.8
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 3.5e-08 62.8 98 40.8


User provided reference genes

Program Settings