Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006083g0030 Nicotiana tabacum HOM05D001249 ORTHO05D031248 6.3e-42 173.7 89 100.0
Nitab4.5_0005148g0040 Nicotiana tabacum HOM05D001249 ORTHO05D003440 1.2e-24 116.3 78 74.4
Peaxi162Scf00057g01912 Petunia axillaris HOM05D001249 ORTHO05D003440 2.0e-24 115.5 80 71.2
Peaxi162Scf63976g00001 Petunia axillaris HOM05D001249 ORTHO05D003440 2.0e-24 115.5 80 71.2
Nitab4.5_0000348g0040 Nicotiana tabacum HOM05D001249 ORTHO05D003440 1.3e-23 112.8 80 70.0
Nitab4.5_0003681g0020 Nicotiana tabacum HOM05D001249 ORTHO05D003440 1.3e-23 112.8 80 70.0
Medtr3g045190 Medicago truncatula HOM05D001249 ORTHO05D003440 8.5e-23 110.2 78 70.5
Glyma.20G044800 Glycine max HOM05D001249 ORTHO05D003440 5.5e-22 107.5 80 66.2
Gohir.A01G231800 Gossypium hirsutum HOM05D001249 ORTHO05D003440 9.4e-22 106.7 74 70.3
Gohir.D01G221900 Gossypium hirsutum HOM05D001249 ORTHO05D003440 9.4e-22 106.7 74 70.3
Gorai.002G268600 Gossypium raimondii HOM05D001249 ORTHO05D003440 9.4e-22 106.7 74 70.3
Solyc08g015690.4 Solanum lycopersicum HOM05D001249 ORTHO05D003440 1.2e-21 106.3 77 67.5
Sopen08g005800 Solanum pennellii HOM05D001249 ORTHO05D003440 1.2e-21 106.3 77 67.5
Thecc.05G000700 Theobroma cacao HOM05D001249 ORTHO05D003440 1.2e-21 106.3 76 67.1
Sopen12g008300 Solanum pennellii HOM05D001249 ORTHO05D003440 1.6e-21 105.9 71 74.6
PGSC0003DMG400006460 Solanum tuberosum HOM05D001249 ORTHO05D003440 1.6e-21 105.9 71 74.6
Dinv24741 Davidia involucrata HOM05D001249 ORTHO05D003440 2.1e-21 105.5 57 80.7
Duzib093G0930 Durio zibethinus HOM05D001249 ORTHO05D003440 3.6e-21 104.8 75 68.0
DCAR_023793 Daucus carota HOM05D001249 ORTHO05D003440 4.7e-21 104.4 77 66.2
CANSAT56G2692 Cannabis sativa HOM05D001249 ORTHO05D003440 6.1e-21 104.0 77 64.9
CAN.G68.1 Capsicum annuum HOM05D001249 ORTHO05D003440 6.1e-21 104.0 76 67.1
Glyma.14G037300 Glycine max HOM05D001249 ORTHO05D003440 8.0e-21 103.6 73 71.2
Phvul.006G018100 Phaseolus vulgaris HOM05D001249 ORTHO05D003440 8.0e-21 103.6 71 71.8
Cc03_g16190 Coffea canephora HOM05D001249 ORTHO05D003440 1.0e-20 103.2 74 66.2
Manes.05G208200 Manihot esculenta HOM05D001249 ORTHO05D003440 1.4e-20 102.8 71 71.8
Solyc12g017520.1 Solanum lycopersicum HOM05D001249 ORTHO05D031248 1.4e-20 102.8 51 90.2
Sabra07G0115100 Salix brachista HOM05D001249 ORTHO05D003440 1.8e-20 102.4 77 62.3
vmacro00731 Vaccinium macrocarpon HOM05D001249 ORTHO05D003440 1.8e-20 102.4 60 75.0
Cpa.g.sc9.242 Carica papaya HOM05D001249 ORTHO05D003440 2.3e-20 102.1 55 81.8
ClCG06G010080 Citrullus lanatus HOM05D001249 ORTHO05D003440 3.0e-20 101.7 60 75.0
Nn1g09415 Nelumbo nucifera HOM05D001249 ORTHO05D003440 3.0e-20 101.7 74 66.2
COL.COLO4_32523 Corchorus olitorius HOM05D001249 ORTHO05D003440 5.2e-20 100.9 77 63.6
Phvul.008G203600 Phaseolus vulgaris HOM05D001249 ORTHO05D003440 5.2e-20 100.9 73 67.1
TPR.G16415 Trifolium pratense HOM05D001249 ORTHO05D003440 5.2e-20 100.9 67 74.6
MSTRG.8086 Avicennia marina HOM05D001249 ORTHO05D003440 6.8e-20 100.5 77 64.9
Ciclev10020871m.g Citrus clementina HOM05D001249 ORTHO05D003440 6.8e-20 100.5 72 68.1
MD02G1000600 Malus domestica HOM05D001249 ORTHO05D003440 6.8e-20 100.5 60 75.0
CsaV3_2G011930 Cucumis sativus L. HOM05D001249 ORTHO05D003440 8.8e-20 100.1 57 77.2
Sc25g0002220 Simmondsia chinensis HOM05D001249 ORTHO05D003440 8.8e-20 100.1 71 67.6
TPR.G11914 Trifolium pratense HOM05D001249 ORTHO05D003440 8.8e-20 100.1 66 72.7
GSVIVG01038264001 Vitis vinifera HOM05D001249 ORTHO05D003440 8.8e-20 100.1 84 61.9
Glyma.02G277300 Glycine max HOM05D001249 ORTHO05D003440 1.2e-19 99.8 73 68.5
VMungo0540G2213 Vigna mungo HOM05D001249 ORTHO05D003440 1.2e-19 99.8 71 67.6
Cfa008531 Carpinus fangiana HOM05D001249 ORTHO05D003440 1.5e-19 99.4 72 66.7
Lju124C5T8 Lonicera japonica HOM05D001249 ORTHO05D003440 1.5e-19 99.4 66 71.2
PSO170G3486 Papaver somniferum HOM05D001249 ORTHO05D003440 1.5e-19 99.4 60 71.7
PSO384G3429 Papaver somniferum HOM05D001249 ORTHO05D003440 1.5e-19 99.4 60 71.7
PGR142G4250 Punica granatum HOM05D001249 ORTHO05D003440 1.5e-19 99.4 71 69.0
arahy.Tifrunner.gnm1.ann1.GD18YF Arachis hypogaea HOM05D001249 ORTHO05D003440 2.0e-19 99.0 60 75.0
CDE02G4753 Ceratophyllum demersum HOM05D001249 ORTHO05D003440 2.0e-19 99.0 76 63.2
Medtr5g088850 Medicago truncatula HOM05D001249 ORTHO05D003440 2.0e-19 99.0 67 71.6
QL10p064706 Quercus lobata HOM05D001249 ORTHO05D003440 2.0e-19 99.0 75 64.0
QL10p064865 Quercus lobata HOM05D001249 ORTHO05D003440 2.0e-19 99.0 75 64.0
QL10p065831 Quercus lobata HOM05D001249 ORTHO05D003440 2.0e-19 99.0 75 64.0
MELO3C020416.2 Cucumis melo HOM05D001249 ORTHO05D003440 2.6e-19 98.6 57 75.4
Lj6g0018713 Lotus japonicus HOM05D001249 ORTHO05D003440 2.6e-19 98.6 66 71.2
PGSC0003DMG400013715 Solanum tuberosum HOM05D001249 ORTHO05D003440 2.6e-19 98.6 73 67.1
CDE04G1507 Ceratophyllum demersum HOM05D001249 ORTHO05D003440 3.4e-19 98.2 57 73.7
Potri.007G146300 Populus trichocarpa HOM05D001249 ORTHO05D003440 3.4e-19 98.2 51 82.4
Prupe.7G271000 Prunus persica HOM05D001249 ORTHO05D003440 3.4e-19 98.2 54 79.6
VMungo0647G1653 Vigna mungo HOM05D001249 ORTHO05D003440 4.4e-19 97.8 66 71.2
arahy.Tifrunner.gnm1.ann1.4U54KW Arachis hypogaea HOM05D001249 ORTHO05D003440 5.7e-19 97.4 60 73.3
AUR62023689 Chenopodium quinoa HOM05D001249 ORTHO05D003440 5.7e-19 97.4 53 83.0
DCAR_027489 Daucus carota HOM05D001249 ORTHO05D003440 5.7e-19 97.4 77 62.3
Lju470C1T4 Lonicera japonica HOM05D001249 ORTHO05D003440 5.7e-19 97.4 53 81.1
Sed0007404 Sechium edule HOM05D001249 ORTHO05D003440 5.7e-19 97.4 60 70.0
ATR0743G044 Amborella trichopoda HOM05D001249 ORTHO05D003440 7.5e-19 97.1 54 77.8
LjContig00564g0000582 Lotus japonicus HOM05D001249 ORTHO05D003440 7.5e-19 97.1 66 72.7
MBI07_g27882_MAGBIO Magnolia biondii HOM05D001249 ORTHO05D003440 7.5e-19 97.1 79 59.5
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 7.5e-19 97.1 58 72.4
Aqoxy6G00880 Aquilegia oxysepala HOM05D001249 ORTHO05D003440 9.8e-19 96.7 71 64.8
BcaB06g29513 Brassica carinata HOM05D001249 ORTHO05D003440 9.8e-19 96.7 59 74.6
BcaC02g07138 Brassica carinata HOM05D001249 ORTHO05D003440 9.8e-19 96.7 59 74.6
CiPaw.01G202900 Carya illinoinensis HOM05D001249 ORTHO05D003440 9.8e-19 96.7 71 66.2
CiPaw.02G125500 Carya illinoinensis HOM05D001249 ORTHO05D003440 9.8e-19 96.7 53 77.4
Gohir.A03G218500 Gossypium hirsutum HOM05D001249 ORTHO05D003440 9.8e-19 96.7 49 85.7
Lalb_Chr15g0080151 Lupinus albus HOM05D001249 ORTHO05D003440 9.8e-19 96.7 67 70.1
TAR362G1111 Trochodendron aralioides HOM05D001249 ORTHO05D003440 9.8e-19 96.7 73 64.4
Migut.N03015 Erythranthe guttata HOM05D001249 ORTHO05D003440 1.3e-18 96.3 73 65.8
Ah.07g203310 Amaranthus hybridus HOM05D001249 ORTHO05D003440 1.7e-18 95.9 51 82.4
BolC4t28588H Brassica oleracea HOM05D001249 ORTHO05D003440 1.7e-18 95.9 56 76.8
Eucgr.H00245 Eucalyptus grandis HOM05D001249 ORTHO05D003440 1.7e-18 95.9 66 71.2
MD15G1142200 Malus domestica HOM05D001249 ORTHO05D003440 1.7e-18 95.9 74 62.2
RcHm_v2.0_Chr2g0084381 Rosa chinensis HOM05D001249 ORTHO05D003440 1.7e-18 95.9 51 82.4
THA.LOC104804361 Tarenaya hassleriana HOM05D001249 ORTHO05D003440 1.7e-18 95.9 66 71.2
Atru.chr3.1961 Acer truncatum HOM05D001249 ORTHO05D003440 2.2e-18 95.5 51 80.4
SalBow6G0898 Salvia bowleyana HOM05D001249 ORTHO05D003440 2.2e-18 95.5 60 70.0
Zm00001eb304760 Zea mays HOM05D001249 ORTHO05D003440 2.2e-18 95.5 53 75.5
Aa31LG1G25730 Aethionema arabicum HOM05D001249 ORTHO05D003440 2.8e-18 95.1 51 82.4
FvH4_1g00090 Fragaria vesca HOM05D001249 ORTHO05D003440 2.8e-18 95.1 51 80.4
FAN26G0381 Fragaria x ananassa HOM05D001249 ORTHO05D003440 2.8e-18 95.1 51 80.4
FAN28G2707 Fragaria x ananassa HOM05D001249 ORTHO05D003440 2.8e-18 95.1 51 80.4
Peaxi162Scf01205g00175 Petunia axillaris HOM05D001249 ORTHO05D003440 2.8e-18 95.1 67 70.1
Hund12304 Selenicereus undatus HOM05D001249 ORTHO05D003440 2.8e-18 95.1 77 62.3
vmacro03772 Vaccinium macrocarpon HOM05D001249 ORTHO05D003440 2.8e-18 95.1 54 75.9
Gohir.A07G233300 Gossypium hirsutum HOM05D001249 ORTHO05D003440 4.8e-18 94.4 51 80.4
Lalb_Chr10g0106081 Lupinus albus HOM05D001249 ORTHO05D003440 6.3e-18 94.0 68 66.2
THA.LOC104802350 Tarenaya hassleriana HOM05D001249 ORTHO05D003440 6.3e-18 94.0 66 69.7
Aqoxy6G00001 Aquilegia oxysepala HOM05D001249 ORTHO05D003440 8.3e-18 93.6 54 75.9
CDE09G1295 Ceratophyllum demersum HOM05D001249 ORTHO05D003440 8.3e-18 93.6 77 61.0
Oeu014978.1 Olea europaea HOM05D001249 ORTHO05D003440 8.3e-18 93.6 68 66.2
Psat2g021400 Pisum sativum HOM05D001249 ORTHO05D003440 1.1e-17 93.2 55 74.5
TWI63G1312 Tripterygium wilfordii HOM05D001249 ORTHO05D003440 1.1e-17 93.2 70 67.1
HPP92_001207 Vanilla planifolia HOM05D001249 ORTHO05D003440 1.1e-17 93.2 66 68.2
Migut.G00799 Erythranthe guttata HOM05D001249 ORTHO05D003440 1.4e-17 92.8 80 56.2
Lalb_Chr04g0249331 Lupinus albus HOM05D001249 ORTHO05D003440 1.4e-17 92.8 92 55.4
PSO675G8641 Papaver somniferum HOM05D001249 ORTHO05D003440 1.8e-17 92.4 80 56.2
Actinidia18386 Actinidia chinensis HOM05D006787 ORTHO05D003440 2.4e-17 92.0 53 73.6
ATR0225G022 Amborella trichopoda HOM05D001249 ORTHO05D003440 2.4e-17 92.0 78 56.4
BcaB06g29354 Brassica carinata HOM05D001249 ORTHO05D003440 2.4e-17 92.0 53 77.4
Os03g0843300 Oryza sativa ssp. japonica HOM05D001249 ORTHO05D003440 2.4e-17 92.0 74 62.2
Zm00001eb064120 Zea mays HOM05D001249 ORTHO05D003440 2.4e-17 92.0 72 63.9
A04p33180 Brassica napus HOM05D001249 ORTHO05D003440 3.1e-17 91.7 51 80.4
BraA04t18777Z Brassica rapa HOM05D001249 ORTHO05D003440 3.1e-17 91.7 51 80.4
Os07g0272300 Oryza sativa ssp. japonica HOM05D001249 ORTHO05D003440 3.1e-17 91.7 53 71.7
AT2G44060 Arabidopsis thaliana HOM05D001249 ORTHO05D003440 4.1e-17 91.3 51 78.4
MBI16_g27589_MAGBIO Magnolia biondii HOM05D001249 ORTHO05D003440 5.4e-17 90.9 80 52.5
TAR376G0188 Trochodendron aralioides HOM05D001249 ORTHO05D003440 5.4e-17 90.9 78 53.8
AL4G42930 Arabidopsis lyrata HOM05D001249 ORTHO05D003440 7.0e-17 90.5 49 81.6
A03p24660 Brassica napus HOM05D001249 ORTHO05D003440 7.0e-17 90.5 53 75.5
C03p29400 Brassica napus HOM05D001249 ORTHO05D003440 7.0e-17 90.5 53 75.5
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 7.0e-17 90.5 51 78.4
BolC3t15287H Brassica oleracea HOM05D001249 ORTHO05D003440 7.0e-17 90.5 53 75.5
BraA03t11672Z Brassica rapa HOM05D001249 ORTHO05D003440 7.0e-17 90.5 53 75.5
Carub.0004s2661 Capsella rubella HOM05D001249 ORTHO05D003440 7.0e-17 90.5 49 81.6
CARHR139220 Cardamine hirsuta HOM05D001249 ORTHO05D003440 7.0e-17 90.5 49 81.6
BcaB01g03333 Brassica carinata HOM05D001249 ORTHO05D003440 9.1e-17 90.1 51 78.4
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 9.1e-17 90.1 51 78.4
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 9.1e-17 90.1 51 78.4
ECA233G0816 Erigeron canadensis HOM05D001249 ORTHO05D003440 9.1e-17 90.1 76 60.5
Thhalv10001537m.g Eutrema salsugineum HOM05D001249 ORTHO05D003440 9.1e-17 90.1 51 76.5
PSO541G5475 Papaver somniferum HOM05D001249 ORTHO05D003440 9.1e-17 90.1 80 55.0
Sed0022992 Sechium edule HOM05D001249 ORTHO05D003440 1.2e-16 89.7 51 76.5
ECA248G2519 Erigeron canadensis HOM05D001249 ORTHO05D003440 1.6e-16 89.4 51 74.5
Sp4g26140 Schrenkiella parvula HOM05D001249 ORTHO05D003440 1.6e-16 89.4 53 73.6
SEGI_02724 Sequoiadendron giganteum HOM05D001249 ORTHO05D003440 1.6e-16 89.4 99 44.4
Ca_26658_v3 Cicer arietinum L. HOM05D001249 ORTHO05D003440 2.0e-16 89.0 62 67.7
CAN.G207.8 Capsicum annuum HOM05D001249 ORTHO05D003440 2.7e-16 88.6 69 66.7
AUR62002497 Chenopodium quinoa HOM05D001249 ORTHO05D003440 3.5e-16 88.2 51 74.5
Nn5g29337 Nelumbo nucifera HOM05D001249 ORTHO05D003440 3.5e-16 88.2 80 56.2
Ca_06180_v3 Cicer arietinum L. HOM05D001249 ORTHO05D003440 5.9e-16 87.4 61 68.9
SGA_v2.0_scaffold37G14908 Striga asiatica HOM05D001249 ORTHO05D003440 5.9e-16 87.4 69 65.2
SGA_v2.0_scaffold12G06226 Striga asiatica HOM05D001249 ORTHO05D003440 1.7e-15 85.9 69 62.3
HanXRQChr01g0017591 Helianthus annuus HOM05D001249 ORTHO05D003440 5.0e-15 84.3 51 68.6
Lsat_1_v5_gn_1_82580 Lactuca sativa HOM05D001249 ORTHO05D003440 2.5e-14 82.0 49 69.4
EL10Ac3g06181 Beta vulgaris HOM05D001249 ORTHO05D003440 3.3e-14 81.6 49 71.4
Mapoly0002s0220 Marchantia polymorpha HOM05D001249 ORTHO05D003440 1.6e-13 79.3 57 59.6
Pp3c24_14840 Physcomitrium patens HOM05D001249 ORTHO05D003440 1.6e-13 79.3 58 63.8
AagrBONN_evm.TU.Sc2ySwM_117.2490 Anthoceros agrestis HOM05D001249 ORTHO05D003440 2.1e-13 79.0 61 57.4
SMO367G0480 Selaginella moellendorffii HOM05D001249 ORTHO05D003440 1.8e-12 75.9 55 60.0
Pp3c23_18440 Physcomitrium patens HOM05D001249 ORTHO05D003440 3.0e-12 75.1 57 61.4
Aqoxy5G02073 Aquilegia oxysepala HOM05D001249 ORTHO05D031248 4.4e-11 71.2 39 79.5
QL10p064899 Quercus lobata HOM05D001249 ORTHO05D003440 1.7e-10 69.3 42 66.7
CDE07G0014 Ceratophyllum demersum HOM05D001249 ORTHO05D003440 3.7e-10 68.2 40 75.0
Manes.01G009601 Manihot esculenta HOM05D001249 ORTHO05D003440 1.8e-09 65.9 47 57.4
CBR_g39190 Chara braunii HOM05D001249 ORTHO05D003440 1.0e-07 60.1 47 51.1
CBR_g75560 Chara braunii HOM05D001249 ORTHO05D003440 1.0e-07 60.1 47 51.1
Lju41A14T32 Lonicera japonica HOM05D001249 ORTHO05D003440 2.9e-07 58.5 46 58.7
MBI10_g03654_MAGBIO Magnolia biondii HOM05D001249 ORTHO05D003440 7.3e-06 53.9 49 44.9


User provided reference genes

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