Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 0.0e+00 1299.6 652 100.0
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 0.0e+00 1248.4 668 95.1
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 0.0e+00 1164.1 667 88.9
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 0.0e+00 1162.1 670 89.0
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 0.0e+00 1161.4 670 89.0
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 0.0e+00 1077.0 657 85.4
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 6.2e-272 940.6 664 72.7
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 6.9e-271 937.2 665 72.2
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 4.9e-269 931.0 667 72.4
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 1.1e-268 929.9 666 72.2
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 3.2e-268 928.3 668 71.7
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 6.7e-266 920.6 665 70.7
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 2.1e-264 915.6 666 71.3
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 1.7e-261 906.0 672 70.1
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 4.9e-261 904.4 653 70.8
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 6.7e-258 894.0 653 71.1
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 2.5e-257 892.1 647 68.9
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 4.3e-257 891.3 653 69.4
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 8.2e-256 887.1 653 69.5
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 3.1e-255 885.2 653 69.1
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 6.9e-255 884.0 653 71.1
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 4.5e-254 881.3 658 68.2
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 4.5e-254 881.3 624 71.6
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 7.6e-254 880.6 659 68.3
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 5.0e-253 877.9 665 68.7
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 1.4e-252 876.3 661 68.8
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 2.5e-252 875.5 651 69.3
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 5.5e-252 874.4 664 69.0
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 1.2e-251 873.2 659 67.8
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 1.2e-251 873.2 660 67.9
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 2.1e-251 872.5 648 69.6
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 6.1e-251 870.9 665 66.6
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 6.7e-250 867.5 660 68.5
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 1.1e-249 866.7 652 68.3
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 2.5e-249 865.5 671 66.5
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 7.4e-249 864.0 653 69.1
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 9.7e-249 863.6 667 66.9
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 2.2e-248 862.4 658 65.7
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 2.2e-248 862.4 667 66.3
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 6.9e-247 857.4 646 68.1
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 6.9e-247 857.4 657 66.7
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 1.5e-246 856.3 671 66.6
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 2.0e-246 855.9 646 68.0
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 3.4e-246 855.1 647 67.7
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 1.3e-245 853.2 677 66.3
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 8.5e-245 850.5 660 67.1
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 8.5e-245 850.5 663 64.9
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 3.2e-244 848.6 663 67.0
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 4.2e-244 848.2 646 67.6
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 4.2e-244 848.2 656 65.4
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 1.8e-242 842.8 655 65.8
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 2.3e-242 842.4 664 65.2
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 2.0e-241 839.3 663 65.5
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 1.7e-240 836.3 656 66.2
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 1.4e-236 823.2 660 64.8
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 2.7e-235 818.9 653 65.7
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 7.9e-235 817.4 582 71.3
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 1.4e-234 816.6 658 64.4
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 5.1e-234 814.7 657 65.4
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 3.7e-232 808.5 672 64.0
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 1.2e-230 803.5 647 63.8
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 6.1e-227 791.2 668 63.3
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 4.0e-226 788.5 669 61.7
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 2.6e-225 785.8 653 61.7
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 7.4e-225 784.3 653 60.9
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 7.4e-225 784.3 653 60.9
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 7.4e-225 784.3 653 60.9
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 4.8e-224 781.6 651 61.4
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 1.8e-223 779.6 660 64.5
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 4.1e-223 778.5 652 61.0
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 7.0e-223 777.7 651 61.1
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 1.6e-222 776.5 651 60.8
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 1.6e-222 776.5 651 61.3
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 2.0e-222 776.2 664 60.1
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 3.5e-222 775.4 661 60.2
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 5.9e-222 774.6 661 60.1
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 2.9e-221 772.3 622 63.8
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 5.5e-220 768.1 651 60.8
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 2.1e-219 766.1 660 61.5
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 3.6e-219 765.4 669 59.9
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 1.8e-218 763.1 674 61.7
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 1.2e-214 750.4 649 61.5
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 5.5e-212 741.5 654 59.5
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 3.0e-210 735.7 653 59.1
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 1.2e-209 733.8 654 58.9
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 8.3e-208 727.6 654 58.3
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 9.1e-207 724.2 656 58.1
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 9.1e-207 724.2 530 70.4
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 2.1e-203 713.0 684 58.0
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 1.3e-197 693.7 624 58.7
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 2.9e-197 692.6 562 63.2
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 1.2e-185 654.1 562 60.7
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 4.4e-177 625.5 622 56.3
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 5.8e-177 625.2 657 55.4
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 5.8e-177 625.2 677 53.5
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 8.6e-173 611.3 654 53.8
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 6.9e-162 575.1 447 67.6
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 1.0e-157 561.2 650 50.3
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 1.3e-155 554.3 663 46.3
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 4.5e-153 545.8 502 57.0
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 4.2e-151 539.3 633 47.2
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 2.2e-144 516.9 653 44.4
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 9.3e-143 511.5 596 50.7
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 2.1e-142 510.4 647 44.0
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 2.8e-123 446.8 622 41.2
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 1.8e-85 321.2 341 52.2
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 1.2e-68 265.4 221 61.1
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 1.0e-56 225.7 290 49.7
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 1.8e-45 188.3 121 71.9
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 7.1e-42 176.4 159 58.5
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 9.6e-39 166.0 123 65.9
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 1.6e-38 165.2 107 73.8
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 6.2e-38 163.3 110 74.5
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 3.1e-37 161.0 174 48.9
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 4.0e-37 160.6 107 72.0
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 3.8e-35 154.1 134 57.5
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 1.1e-34 152.5 239 33.9
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 3.2e-34 151.0 158 51.3
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 3.5e-33 147.5 290 34.8
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 3.5e-33 147.5 93 76.3
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 3.0e-32 144.4 158 52.5
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 8.7e-32 142.9 141 56.0
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 1.5e-28 132.1 85 74.1
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 8.4e-27 126.3 99 61.6
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 3.0e-24 117.9 89 64.0
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 3.3e-23 114.4 81 67.9
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 2.1e-22 111.7 91 60.4
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 5.9e-20 103.6 104 51.0
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 5.5e-18 97.1 88 56.8
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 3.9e-16 90.9 525 23.0
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 1.5e-15 89.0 89 56.2
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 4.3e-15 87.4 95 49.5
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 2.4e-13 81.6 54 70.4
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 2.4e-13 81.6 51 72.5
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 3.8e-11 74.3 214 28.5


User provided reference genes

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