Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.9e-120 436.0 244 100.0
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.9e-117 426.0 243 97.5
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 4.6e-103 378.3 244 88.9
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 4.6e-103 378.3 244 88.9
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 3.0e-102 375.6 243 87.7
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 1.1e-96 357.1 244 79.9
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 1.1e-96 357.1 251 83.7
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 1.2e-95 353.6 244 79.5
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 2.7e-95 352.4 242 79.3
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 4.6e-95 351.7 202 88.6
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.8e-94 349.7 245 79.6
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 5.1e-94 348.2 234 82.1
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 5.1e-94 348.2 245 79.2
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 6.7e-94 347.8 245 79.2
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 8.7e-94 347.4 248 79.4
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 1.1e-93 347.1 246 80.5
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 1.1e-93 347.1 246 76.0
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 1.5e-93 346.7 245 78.8
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 2.5e-93 345.9 246 80.1
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 3.3e-93 345.5 245 77.1
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 7.4e-93 344.4 245 78.4
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 1.3e-92 343.6 245 80.0
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.6e-92 343.2 243 75.7
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 1.6e-92 343.2 245 79.2
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 4.0e-91 338.6 242 77.7
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 4.0e-91 338.6 245 76.7
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 6.9e-91 337.8 246 76.8
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 6.9e-91 337.8 245 76.3
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 2.0e-90 336.3 245 75.9
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 4.5e-90 335.1 244 76.2
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 5.8e-90 334.7 244 76.6
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 7.6e-90 334.3 243 73.3
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 7.6e-90 334.3 244 77.0
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.0e-89 334.0 245 78.8
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 2.2e-89 332.8 244 73.8
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 2.2e-89 332.8 245 76.3
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 2.9e-89 332.4 244 75.4
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 6.5e-89 331.3 244 75.4
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 8.4e-89 330.9 243 71.6
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 1.1e-88 330.5 246 78.0
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 1.4e-88 330.1 255 72.9
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 3.2e-88 328.9 244 74.6
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 3.2e-88 328.9 245 77.1
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 7.1e-88 327.8 245 74.3
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 9.3e-88 327.4 244 76.6
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 2.1e-87 326.2 244 75.0
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.7e-87 325.9 247 74.9
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 6.0e-87 324.7 246 75.6
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 1.0e-86 323.9 245 75.1
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 1.8e-86 323.2 245 74.3
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 2.3e-86 322.8 245 73.5
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 3.9e-86 322.0 246 72.0
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 8.7e-86 320.9 235 76.2
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 2.5e-85 319.3 245 70.6
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 3.3e-85 318.9 238 75.6
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 3.3e-85 318.9 246 72.8
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 4.3e-85 318.5 244 73.4
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 5.7e-85 318.2 245 69.8
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 7.4e-85 317.8 247 74.5
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 1.3e-84 317.0 236 74.6
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 1.6e-84 316.6 235 75.7
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 1.6e-84 316.6 244 75.0
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 2.2e-84 316.2 245 72.2
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 2.2e-84 316.2 209 77.0
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 2.8e-84 315.8 244 73.8
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 4.8e-84 315.1 245 70.2
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 4.8e-84 315.1 244 74.2
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 4.8e-84 315.1 247 72.5
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 6.3e-84 314.7 236 76.3
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 1.8e-83 313.2 236 74.2
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 3.1e-83 312.4 245 72.7
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 4.1e-83 312.0 235 74.5
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 5.3e-83 311.6 244 73.0
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 6.9e-83 311.2 244 71.3
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 1.5e-82 310.1 259 69.1
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.5e-82 310.1 243 73.3
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 2.0e-82 309.7 243 73.3
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 4.5e-82 308.5 245 70.2
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 4.5e-82 308.5 247 72.5
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 4.5e-82 308.5 242 75.2
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 4.5e-82 308.5 246 72.8
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 5.9e-82 308.1 246 73.6
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 1.7e-81 306.6 246 72.8
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 1.7e-81 306.6 246 68.7
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 2.2e-81 306.2 246 73.2
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 3.8e-81 305.4 239 68.2
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 5.0e-81 305.1 243 71.6
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 1.4e-80 303.5 242 71.5
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 1.9e-80 303.1 341 54.3
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 9.4e-80 300.8 262 69.1
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 1.2e-79 300.4 243 70.4
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 2.1e-79 299.7 245 70.6
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 4.6e-79 298.5 243 70.8
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 6.1e-79 298.1 247 70.9
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 7.9e-79 297.7 194 77.8
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 2.3e-78 296.2 247 70.4
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 2.3e-78 296.2 244 69.7
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 6.7e-78 294.7 245 68.6
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 1.5e-77 293.5 244 66.8
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 1.3e-76 290.4 242 68.2
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.0e-74 283.1 287 61.3
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 2.6e-74 282.7 247 67.2
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 7.7e-74 281.2 241 68.9
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.0e-73 280.8 245 69.0
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.3e-73 280.4 245 69.0
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 6.5e-73 278.1 221 66.1
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 4.2e-72 275.4 266 64.7
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 7.9e-71 271.2 250 62.0
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.2e-68 263.1 330 53.0
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 5.3e-67 258.5 241 59.8
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 3.4e-66 255.8 243 62.1
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 7.7e-66 254.6 250 62.0
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 5.0e-65 251.9 244 61.1
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 1.4e-64 250.4 278 53.6
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 1.4e-64 250.4 235 65.1
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 2.1e-63 246.5 177 69.5
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 5.0e-57 225.3 242 58.3
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 6.5e-57 224.9 244 58.2
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 1.5e-56 223.8 245 57.1
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.5e-56 223.0 246 54.1
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.2e-55 220.7 148 78.4
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 4.0e-54 215.7 214 56.1
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 5.2e-54 215.3 223 54.3
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 2.8e-52 209.5 136 80.1
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 1.1e-48 197.6 164 69.5
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 6.1e-47 191.8 131 72.5
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 9.8e-45 184.5 135 71.1
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.9e-40 170.2 134 65.7
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 3.6e-39 166.0 191 50.8
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 5.2e-38 162.2 256 41.8
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 8.9e-38 161.4 138 71.7
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 1.2e-34 151.0 191 54.5
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 2.8e-31 139.8 226 36.7
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 8.9e-30 134.8 332 38.9
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 2.6e-29 133.3 101 77.2
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 4.4e-29 132.5 220 37.7
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 4.4e-29 132.5 227 38.3
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 2.4e-27 126.7 102 76.5
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 7.0e-27 125.2 91 70.3
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 2.1e-23 113.6 71 81.7
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.4e-22 110.9 60 86.7
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 8.9e-22 108.2 98 59.2
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 2.6e-21 106.7 78 69.2
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.9e-11 73.9 71 70.4
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 3.2e-11 73.2 160 35.0
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 2.8e-07 60.1 38 73.7
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 3.6e-07 59.7 56 55.4
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 8.1e-07 58.5 34 70.6
Cfa024493 Carpinus fangiana HOM05D003486 ORTHO05D124746 4.0e-06 56.2 169 27.2
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 5.2e-06 55.8 184 29.3


User provided reference genes

Program Settings