Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 4.4e-197 691.0 338 100.0
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 6.1e-170 600.9 338 85.5
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 2.2e-167 592.4 332 89.5
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 8.2e-167 590.5 333 88.3
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 2.6e-149 532.3 335 77.0
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.0e-148 530.4 335 76.4
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 4.7e-146 521.5 344 73.8
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 1.1e-142 510.4 354 70.3
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 1.6e-141 506.5 335 73.7
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 2.7e-141 505.8 338 74.6
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 1.5e-139 500.0 272 88.2
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 1.5e-139 500.0 343 72.9
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 9.4e-139 497.3 342 71.9
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 2.6e-136 489.2 346 71.1
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.7e-135 486.5 333 71.8
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 4.8e-135 485.0 337 68.8
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 6.3e-135 484.6 327 70.6
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 4.1e-134 481.9 327 70.3
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 9.1e-134 480.7 385 63.4
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 2.7e-133 479.2 325 71.7
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.7e-133 479.2 333 71.5
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 7.7e-133 477.6 330 70.3
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.0e-132 477.2 328 70.4
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 1.7e-132 476.5 328 70.1
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.8e-132 475.3 327 70.0
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 6.5e-132 474.6 329 70.2
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 1.1e-131 473.8 331 69.5
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 1.5e-131 473.4 343 67.6
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 7.2e-131 471.1 335 68.4
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.2e-130 470.3 328 69.2
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 1.2e-130 470.3 334 67.1
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.6e-130 469.9 306 72.9
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 2.1e-130 469.5 340 67.9
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 3.6e-130 468.8 334 68.0
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 4.7e-130 468.4 316 72.2
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 4.7e-130 468.4 351 65.5
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 4.7e-130 468.4 351 65.5
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 6.1e-130 468.0 331 67.7
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 6.1e-130 468.0 310 72.9
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.0e-129 467.2 285 79.6
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.8e-129 466.5 338 68.6
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 8.8e-129 464.2 329 67.8
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 8.8e-129 464.2 330 68.2
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 1.2e-128 463.8 316 69.0
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 2.0e-128 463.0 331 67.4
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.3e-127 460.3 331 67.1
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 6.3e-127 458.0 344 65.7
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 6.3e-127 458.0 271 81.5
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 1.1e-126 457.2 343 67.3
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 2.4e-126 456.1 348 64.4
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 9.2e-126 454.1 341 66.0
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 9.2e-126 454.1 335 67.5
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 9.2e-126 454.1 335 67.5
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.2e-125 453.8 366 62.8
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.2e-125 453.8 366 62.8
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 1.2e-125 453.8 340 68.2
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 1.6e-125 453.4 341 66.0
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.6e-125 453.4 323 69.0
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 2.7e-125 452.6 335 67.2
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 3.5e-125 452.2 331 66.5
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 3.5e-125 452.2 331 65.3
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 1.7e-124 449.9 331 65.9
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 6.6e-124 448.0 345 64.9
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 2.5e-123 446.0 345 64.3
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 5.6e-123 444.9 379 61.2
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 1.2e-122 443.7 321 67.9
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 1.6e-122 443.4 317 67.8
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 3.6e-122 442.2 330 67.0
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 6.1e-122 441.4 321 68.8
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 8.0e-122 441.0 331 65.9
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 5.2e-121 438.3 337 63.2
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 6.8e-121 438.0 317 68.8
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 6.8e-121 438.0 318 65.7
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 8.9e-121 437.6 392 57.7
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 2.0e-120 436.4 334 64.4
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 3.4e-120 435.6 299 71.6
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 7.5e-120 434.5 333 64.6
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 7.5e-120 434.5 312 67.9
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 2.2e-119 433.0 331 64.7
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 2.9e-119 432.6 384 59.9
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 3.7e-119 432.2 324 66.4
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 8.3e-119 431.0 306 65.7
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 2.4e-118 429.5 328 64.3
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 5.4e-118 428.3 309 66.3
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 5.4e-118 428.3 308 66.2
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.3e-116 423.7 330 63.0
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 3.9e-116 422.2 319 65.5
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 1.2e-114 417.2 246 80.9
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 1.2e-114 417.2 325 63.1
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.6e-114 415.6 282 77.7
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 2.6e-112 409.5 309 65.0
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.3e-111 407.1 270 70.4
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 3.5e-109 399.1 260 71.9
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 2.5e-107 392.9 407 52.3
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 3.3e-107 392.5 331 59.8
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 8.9e-105 384.4 250 72.0
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 1.2e-104 384.0 303 64.4
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 2.1e-101 373.2 328 57.0
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 3.9e-100 369.0 319 57.7
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 7.3e-99 364.8 326 58.0
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 9.5e-99 364.4 322 56.2
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 2.1e-98 363.2 319 60.2
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 1.4e-97 360.5 319 57.7
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 6.8e-97 358.2 294 61.6
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 6.8e-97 358.2 334 55.1
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 4.9e-95 352.1 208 76.0
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 1.4e-94 350.5 329 54.7
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.9e-94 350.1 326 57.1
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 1.6e-93 347.1 319 58.0
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.3e-92 343.2 315 60.6
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 2.3e-92 343.2 331 57.4
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.9e-92 342.4 315 59.0
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 5.1e-92 342.0 315 59.4
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 5.6e-91 338.6 339 52.2
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 9.6e-91 337.8 391 49.4
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 1.1e-89 334.3 334 53.3
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.8e-89 333.6 317 58.0
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 9.9e-88 327.8 247 65.2
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 4.2e-86 322.4 324 56.5
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 3.0e-84 316.2 285 56.8
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 4.8e-82 308.9 250 60.4
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 5.3e-81 305.4 262 58.0
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 9.3e-78 294.7 278 54.7
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 5.8e-72 275.4 306 47.4
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 9.3e-70 268.1 162 83.3
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 2.8e-66 256.5 305 45.6
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 1.2e-64 251.1 315 44.1
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.2e-64 251.1 302 46.4
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.7e-63 247.3 301 43.9
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 9.3e-62 241.5 151 75.5
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.7e-55 220.7 243 50.6
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 7.2e-54 215.3 133 72.2
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 8.2e-50 201.8 335 41.5
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 5.3e-49 199.1 254 41.3
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 6.9e-49 198.7 206 46.1
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 3.4e-48 196.4 113 79.6
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 3.4e-48 196.4 160 57.5
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 1.1e-46 191.4 259 41.7
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 4.8e-42 176.0 250 44.4
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.8e-41 174.1 258 38.4
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 8.5e-39 165.2 235 40.9
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 2.4e-33 147.1 245 36.7
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 4.1e-33 146.4 88 75.0
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 7.0e-33 145.6 255 36.1
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 2.0e-27 127.5 366 27.9
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 8.2e-26 122.1 72 83.3
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 8.2e-26 122.1 72 83.3
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 1.8e-25 120.9 72 81.9
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 2.7e-24 117.1 97 67.0
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.5e-24 116.3 221 33.9
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.0e-23 115.2 300 28.3
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 1.9e-22 110.9 113 44.2
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 7.2e-22 109.0 310 30.3
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 1.2e-21 108.2 114 41.2
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 4.7e-21 106.3 261 29.9
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 6.8e-20 102.4 292 27.1
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.0e-19 100.9 153 38.6
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 1.3e-18 98.2 212 33.0
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.8e-18 97.1 300 28.0
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 1.1e-14 85.1 60 63.3
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 1.4e-12 78.2 77 57.1
Nitab4.5_0000159g0060 Nicotiana tabacum HOM05D056068 ORTHO05D005020 5.7e-11 72.8 81 49.4
Nitab4.5_0003518g0040 Nicotiana tabacum HOM05D056068 ORTHO05D005020 1.7e-10 71.2 81 49.4
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 5.4e-09 66.2 84 45.2


User provided reference genes

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