Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 1.0e-286 989.6 572 100.0
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 4.2e-264 914.4 498 96.4
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 2.5e-248 862.1 576 87.0
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 4.2e-248 861.3 576 87.7
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 2.3e-246 855.5 534 85.8
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 3.9e-246 854.7 504 87.9
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 3.4e-242 841.6 504 89.1
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 1.0e-222 776.9 532 80.8
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 6.8e-222 774.2 505 79.0
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 7.5e-221 770.8 539 74.8
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 1.8e-219 766.1 474 81.2
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 5.4e-219 764.6 500 78.0
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 1.6e-218 763.1 437 85.4
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 1.0e-217 760.4 492 81.1
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 1.7e-217 759.6 444 83.8
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 2.9e-217 758.8 493 77.7
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 2.9e-217 758.8 500 79.0
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 6.6e-217 757.7 493 81.5
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 1.9e-216 756.1 491 78.2
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 9.5e-216 753.8 432 85.2
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 9.5e-216 753.8 461 82.6
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 1.2e-215 753.4 501 78.6
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 6.1e-215 751.1 528 78.4
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 8.0e-215 750.7 439 84.3
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 8.0e-215 750.7 494 78.5
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 4.0e-214 748.4 498 75.9
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 4.0e-214 748.4 438 84.7
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 1.5e-213 746.5 491 76.4
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 1.5e-213 746.5 547 78.8
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 8.3e-212 740.7 501 74.7
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 1.4e-211 740.0 500 77.8
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 1.4e-211 740.0 530 78.5
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 1.8e-211 739.6 498 76.1
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 3.1e-211 738.8 498 75.7
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 4.1e-211 738.4 501 78.2
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 1.2e-210 736.9 462 81.8
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 2.0e-210 736.1 494 78.1
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 1.0e-209 733.8 492 75.6
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 2.3e-209 732.6 531 78.5
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 8.6e-209 730.7 459 80.4
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 1.5e-208 729.9 495 76.2
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 1.9e-208 729.6 454 78.9
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 2.5e-208 729.2 495 77.6
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 9.5e-208 727.2 494 75.7
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 2.8e-207 725.7 433 81.1
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 4.7e-207 724.9 440 82.3
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 8.0e-207 724.2 491 78.2
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 3.1e-206 722.2 442 81.9
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 3.1e-206 722.2 491 78.0
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 3.4e-205 718.8 526 75.7
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 4.4e-205 718.4 495 76.2
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 5.8e-205 718.0 495 72.7
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 5.8e-205 718.0 545 74.7
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 1.3e-204 716.8 534 69.9
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 1.7e-204 716.5 451 80.5
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 2.9e-204 715.7 495 76.0
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 7.0e-203 711.1 455 77.4
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 6.6e-201 704.5 441 80.3
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 2.5e-200 702.6 488 76.6
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 5.6e-200 701.4 497 71.8
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 2.8e-199 699.1 544 67.6
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 6.2e-199 698.0 465 76.6
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 8.0e-199 697.6 437 79.2
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 8.0e-199 697.6 434 81.3
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 8.0e-199 697.6 488 74.6
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 1.1e-198 697.2 490 75.3
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 1.1e-198 697.2 500 74.4
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 1.4e-198 696.8 425 83.1
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 1.8e-198 696.4 434 79.3
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 1.8e-198 696.4 437 79.2
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 4.0e-198 695.3 417 81.5
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 4.0e-198 695.3 417 81.5
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 5.2e-198 694.9 435 79.1
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 5.2e-198 694.9 500 74.8
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 6.8e-198 694.5 425 81.9
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 8.9e-198 694.1 437 78.9
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 1.2e-197 693.7 492 74.0
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 2.0e-197 693.0 464 76.9
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 2.0e-197 693.0 437 78.7
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 9.8e-197 690.6 550 69.5
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 2.2e-196 689.5 458 76.9
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 2.9e-196 689.1 512 74.6
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 3.7e-196 688.7 439 78.1
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 4.9e-196 688.3 420 79.8
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 6.4e-196 688.0 431 77.5
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 8.3e-196 687.6 437 79.2
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 8.3e-196 687.6 437 78.0
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 1.2e-191 673.7 430 77.7
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 1.1e-190 670.6 502 71.9
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 2.3e-190 669.5 430 77.2
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 1.2e-189 667.2 478 73.0
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 2.0e-189 666.4 441 77.3
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 4.9e-188 661.8 492 70.5
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 2.4e-187 659.4 423 78.3
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 6.6e-185 651.4 492 73.0
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.6e-183 646.7 493 72.6
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 5.2e-182 641.7 438 74.7
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 1.7e-180 636.7 418 76.1
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 4.4e-173 612.1 491 67.0
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 3.8e-172 609.0 356 85.4
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 8.4e-172 607.8 495 67.9
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 1.4e-171 607.1 493 65.9
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 2.4e-171 606.3 501 65.7
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 5.1e-169 598.6 451 67.6
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 7.3e-168 594.7 421 70.3
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.3e-167 594.0 396 77.0
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 3.6e-167 592.4 493 65.7
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 3.1e-166 589.3 503 65.2
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 1.2e-165 587.4 503 64.2
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 2.0e-165 586.6 493 62.9
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 7.1e-163 578.2 361 81.2
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 1.3e-161 573.9 485 63.5
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 1.8e-161 573.5 407 71.5
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 5.1e-161 572.0 377 76.7
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 3.7e-159 565.8 419 71.4
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 1.2e-154 550.8 420 69.0
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 4.6e-154 548.9 453 63.4
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 6.7e-153 545.0 413 66.6
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 2.8e-151 539.7 444 62.6
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 5.8e-149 531.9 434 63.1
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 8.4e-148 528.1 419 66.1
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 7.7e-141 505.0 428 62.1
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 4.5e-133 479.2 375 66.1
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 2.2e-132 476.9 493 53.3
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 9.4e-131 471.5 358 69.8
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 4.7e-130 469.2 427 56.4
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 6.1e-130 468.8 380 62.1
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 5.1e-129 465.7 355 69.6
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 2.0e-128 463.8 378 64.6
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 9.1e-126 454.9 454 53.3
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 1.3e-124 451.1 442 53.6
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 1.3e-124 451.1 363 66.1
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 3.6e-122 443.0 669 41.9
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 2.0e-120 437.2 460 54.8
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 1.7e-119 434.1 410 59.0
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 4.5e-117 426.0 412 58.5
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 2.3e-113 413.7 422 51.7
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 4.7e-106 389.4 347 58.5
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 2.2e-103 380.6 471 49.3
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 1.2e-101 374.8 311 64.0
PSO063G1302 Papaver somniferum HOM05D003858 ORTHO05D005878 1.7e-100 370.9 282 69.5
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 1.7e-100 370.9 437 49.4
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 7.2e-99 365.5 478 45.0
Zm00001eb256780 Zea mays HOM05D003858 ORTHO05D005878 2.3e-97 360.5 244 77.0
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 4.1e-94 349.7 318 57.9
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 1.5e-91 341.3 442 45.5
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 4.3e-83 313.2 405 42.5
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 4.1e-78 296.6 330 48.5
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 1.9e-75 287.7 258 58.9
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 2.0e-72 277.7 357 49.6
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 1.4e-70 271.6 231 67.1
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 1.6e-69 268.1 173 78.0
Actinidia36804 Actinidia chinensis HOM05D003858 ORTHO05D005878 9.9e-56 222.2 285 48.4
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 1.5e-40 171.8 98 82.7
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 2.9e-31 141.0 105 65.7
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 2.3e-28 131.3 211 42.2
Zm00001eb256800 Zea mays HOM05D003858 ORTHO05D033539 1.5e-27 128.6 119 62.2
Medtr6g024025 Medicago truncatula HOM05D003858 ORTHO05D267118 5.7e-27 126.7 106 62.3
AUR62028260 Chenopodium quinoa HOM05D008347 ORTHO05D006373 1.2e-24 119.0 93 71.0
C08p38970 Brassica napus HOM05D003858 ORTHO05D033539 2.6e-24 117.9 119 54.6
FvH4_3g12461 Fragaria vesca HOM05D000004 ORTHO05D000002 1.2e-21 109.0 148 43.9
CBR_g61468 Chara braunii HOM05D003858 ORTHO05D131775 2.1e-21 108.2 155 47.1
BolC8t51470H Brassica oleracea HOM05D003858 ORTHO05D015239 1.0e-20 105.9 122 46.7
BolC8t51471H Brassica oleracea HOM05D003858 ORTHO05D033539 1.0e-20 105.9 119 51.3
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 6.7e-20 103.2 70 67.1
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 5.7e-19 100.1 209 38.3
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 4.1e-17 94.0 45 91.1
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 9.1e-17 92.8 74 60.8
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 5.0e-15 87.0 188 31.4
COL.COLO4_09285 Corchorus olitorius HOM05D003858 ORTHO05D155188 1.1e-14 85.9 46 87.0
HanXRQChr13g0426321 Helianthus annuus HOM05D003858 ORTHO05D000008 1.2e-13 82.4 75 50.7
Zm00001eb256810 Zea mays HOM05D003858 ORTHO05D005878 3.9e-12 77.4 101 45.5
BcaC07g40899 Brassica carinata HOM05D003858 ORTHO05D015239 1.7e-10 72.0 96 42.7
DCAR_007996 Daucus carota HOM05D003858 ORTHO05D176634 1.1e-09 69.3 140 35.0
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 3.5e-08 64.3 199 25.1
ECA247G3834 Erigeron canadensis HOM05D000031 ORTHO05D000030 4.5e-08 63.9 98 38.8
ECA247G3860 Erigeron canadensis HOM05D000031 ORTHO05D000030 7.7e-08 63.2 79 46.8
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 8.5e-07 59.7 202 23.8
CiPaw.05G188800 Carya illinoinensis HOM05D003858 ORTHO05D127864 1.5e-06 58.9 29 89.7
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 4.2e-06 57.4 347 23.9
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 7.2e-06 56.6 202 23.3


User provided reference genes

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