Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 5.1e-293 1010.4 517 100.0
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 2.0e-281 971.8 512 95.5
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 2.8e-259 898.3 513 89.7
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 1.8e-245 852.4 512 87.1
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 1.7e-243 845.9 512 84.0
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 1.4e-242 842.8 512 86.5
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 1.8e-242 842.4 512 86.3
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 2.0e-196 689.5 515 68.2
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 1.0e-192 677.2 516 67.1
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 3.3e-191 672.2 513 66.3
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 2.1e-190 669.5 514 66.1
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 4.7e-190 668.3 515 68.2
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 3.1e-189 665.6 520 64.4
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 5.2e-189 664.8 514 65.8
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 4.4e-188 661.8 513 65.7
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 1.3e-187 660.2 515 66.2
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 1.3e-187 660.2 515 66.2
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 1.3e-187 660.2 514 65.8
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 1.7e-187 659.8 513 65.7
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 1.7e-187 659.8 513 66.3
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.9e-186 656.4 513 65.1
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 1.0e-184 650.6 514 65.2
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 2.3e-184 649.4 514 65.2
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 5.1e-184 648.3 516 64.5
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 1.1e-183 647.1 514 66.1
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 7.3e-183 644.4 514 65.0
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 4.4e-180 635.2 513 62.6
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 4.4e-180 635.2 513 63.0
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 3.8e-179 632.1 513 62.8
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 7.1e-178 627.9 513 64.1
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 1.7e-176 623.2 485 64.5
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 5.1e-176 621.7 513 63.7
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 1.1e-175 620.5 513 62.8
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 4.3e-175 618.6 516 63.2
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 7.3e-175 617.8 484 63.4
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 1.6e-174 616.7 485 63.1
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.4e-173 613.6 513 63.2
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 2.6e-172 609.4 477 64.8
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 3.4e-172 609.0 511 61.4
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 9.9e-172 607.4 515 62.5
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 8.4e-171 604.4 511 61.1
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 1.1e-170 604.0 514 62.3
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 2.4e-170 602.8 514 62.8
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 3.2e-170 602.4 511 61.6
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 7.1e-170 601.3 511 63.0
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 7.1e-170 601.3 513 61.0
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 1.6e-169 600.1 507 62.1
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 6.0e-169 598.2 514 60.9
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 1.0e-168 597.4 514 62.5
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 1.0e-168 597.4 517 60.7
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 1.0e-168 597.4 515 60.2
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.3e-168 597.0 519 60.9
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.3e-168 597.0 514 62.6
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 2.5e-167 592.8 514 60.5
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 3.3e-167 592.4 505 59.8
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 5.6e-167 591.7 515 59.4
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 7.3e-167 591.3 512 60.2
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.6e-166 590.1 510 60.2
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 8.1e-166 587.8 513 59.8
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 3.1e-165 585.9 515 59.6
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 4.0e-165 585.5 512 60.0
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 6.9e-165 584.7 523 59.1
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 2.0e-164 583.2 515 59.4
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 1.3e-163 580.5 512 59.0
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 8.4e-163 577.8 516 58.9
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 1.9e-162 576.6 512 59.0
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.3e-160 570.5 519 59.2
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 1.8e-160 570.1 519 59.0
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.0e-160 569.3 485 59.8
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.7e-160 568.2 485 59.8
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.7e-160 568.2 485 59.6
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.3e-159 565.5 485 59.4
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 5.6e-159 565.1 517 56.9
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 7.4e-159 564.7 485 59.6
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 9.6e-159 564.3 522 57.5
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 9.6e-159 564.3 407 70.5
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 3.7e-158 562.4 521 57.4
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 3.1e-157 559.3 517 57.4
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 7.6e-156 554.7 515 55.0
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 7.6e-156 554.7 516 56.4
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 3.2e-154 549.3 510 56.5
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.2e-153 547.4 486 58.0
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 1.6e-153 547.0 512 54.9
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 2.1e-153 546.6 517 55.5
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 2.7e-153 546.2 512 57.8
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 3.5e-153 545.8 517 55.7
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 4.6e-153 545.4 515 55.0
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 1.0e-152 544.3 516 54.8
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 8.7e-152 541.2 516 54.7
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 1.9e-151 540.0 516 54.5
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 2.5e-151 539.7 517 57.1
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 4.3e-151 538.9 506 56.1
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 9.0e-149 531.2 476 57.6
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 1.2e-148 530.8 515 54.6
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 5.8e-148 528.5 516 54.7
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 1.0e-147 527.7 544 54.8
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 6.5e-147 525.0 514 53.5
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 7.9e-145 518.1 519 53.6
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 3.7e-142 509.2 523 54.1
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.5e-140 503.8 523 54.3
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 1.9e-135 486.9 422 60.0
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 2.0e-132 476.9 415 59.5
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 1.0e-120 438.0 520 49.0
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 3.7e-118 429.5 522 49.2
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 2.9e-115 419.9 379 56.2
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 2.2e-110 403.7 515 47.4
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 1.6e-108 397.5 473 48.2
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 1.6e-108 397.5 480 49.0
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 4.5e-108 396.0 544 42.3
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 4.5e-100 369.4 421 50.6
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 1.1e-98 364.8 334 55.4
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 3.3e-98 363.2 291 63.6
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 7.0e-93 345.5 478 40.8
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 2.7e-92 343.6 324 55.9
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 4.7e-89 332.8 483 40.0
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 2.9e-86 323.6 295 58.3
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 5.4e-85 319.3 421 45.8
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 2.0e-84 317.4 501 38.7
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 7.5e-79 298.9 463 37.4
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 9.8e-79 298.5 266 59.4
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 2.0e-71 274.2 474 39.0
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 7.5e-71 272.3 431 40.6
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 1.2e-68 265.0 318 49.1
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 4.3e-66 256.5 265 54.3
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 3.5e-60 236.9 238 58.4
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 3.5e-60 236.9 202 63.4
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.3e-59 235.0 206 57.8
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 1.2e-36 158.7 192 47.9
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 3.4e-31 140.6 450 29.3
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 8.4e-30 136.0 351 28.2
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 8.4e-30 136.0 559 23.8
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 1.2e-28 132.1 85 70.6
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 7.4e-26 122.9 138 52.2
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 1.6e-25 121.7 88 72.7
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 4.5e-23 113.6 88 63.6
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 1.7e-22 111.7 91 63.7
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 5.5e-21 106.7 91 59.3
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.3e-17 95.5 162 39.5
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 1.7e-17 95.1 473 24.3
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 6.3e-17 93.2 84 56.0
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 7.7e-15 86.3 76 61.8
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.0e-14 83.6 76 55.3
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 1.6e-12 78.6 85 45.9
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 2.6e-10 71.2 468 23.5
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.7e-09 68.6 75 48.0
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 2.2e-09 68.2 68 51.5
SGA_v2.0_scaffold2881G54235 Striga asiatica HOM05D001925 ORTHO05D005701 7.0e-08 63.2 49 65.3


User provided reference genes

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