Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 2.8e-272 941.4 504 100.0
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 4.3e-204 714.9 583 69.6
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 3.1e-202 708.8 583 69.8
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 1.9e-199 699.5 583 68.3
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.4e-194 683.3 593 69.5
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 5.3e-186 654.8 628 62.3
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 3.6e-158 562.4 585 55.2
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 1.3e-155 553.9 590 56.3
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 2.2e-155 553.1 590 56.3
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 2.4e-154 549.7 585 56.2
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 1.2e-153 547.4 589 55.0
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 4.5e-153 545.4 589 54.8
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 3.2e-151 539.3 590 53.6
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 2.6e-148 529.6 591 52.5
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 1.3e-147 527.3 592 53.0
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 2.2e-147 526.6 581 52.8
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 1.1e-146 524.2 589 52.6
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.4e-146 523.9 590 52.7
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 2.6e-145 519.6 583 52.8
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 5.9e-145 518.5 582 53.3
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 7.7e-145 518.1 591 51.9
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.9e-144 516.2 591 51.8
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 2.9e-144 516.2 591 51.6
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 6.5e-144 515.0 621 52.0
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 1.5e-143 513.8 582 53.3
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 2.5e-143 513.1 589 53.1
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 4.2e-143 512.3 544 56.2
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 9.4e-143 511.1 594 51.2
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 9.4e-143 511.1 590 51.5
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 4.7e-142 508.8 583 52.5
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 8.8e-141 504.6 591 51.6
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 1.2e-140 504.2 585 51.8
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 2.0e-140 503.4 582 52.1
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 3.3e-140 502.7 583 51.8
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 7.5e-140 501.5 592 51.9
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 9.7e-140 501.1 590 50.3
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 9.7e-140 501.1 589 51.4
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.7e-139 500.4 589 51.3
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.7e-139 500.4 592 51.2
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 2.2e-139 500.0 579 52.0
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 2.8e-139 499.6 580 52.2
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.7e-139 499.2 592 51.2
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 6.3e-139 498.4 595 49.9
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 1.8e-138 496.9 585 52.3
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 3.1e-138 496.1 587 50.1
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 7.0e-138 495.0 595 50.4
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 4.5e-137 492.3 588 50.9
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 2.2e-136 490.0 531 54.2
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 5.0e-136 488.8 587 51.4
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 8.5e-136 488.0 575 51.8
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 1.5e-135 487.3 587 49.1
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 1.9e-135 486.9 578 51.0
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 2.5e-135 486.5 579 51.6
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 1.6e-134 483.8 587 49.1
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 1.6e-134 483.8 516 54.3
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 2.7e-134 483.0 580 50.9
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 8.0e-134 481.5 580 51.2
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 1.0e-133 481.1 582 51.2
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 2.3e-133 479.9 601 49.6
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 3.0e-133 479.6 587 49.1
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 3.0e-133 479.6 587 49.1
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 3.0e-133 479.6 558 52.2
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 4.0e-133 479.2 587 49.1
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 4.0e-133 479.2 583 49.4
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 5.2e-133 478.8 607 48.6
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 8.8e-133 478.0 583 48.5
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 1.2e-132 477.6 587 49.1
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 2.6e-132 476.5 587 48.6
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 2.6e-132 476.5 581 49.2
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 2.6e-132 476.5 581 48.9
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 3.4e-132 476.1 580 51.4
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 3.4e-132 476.1 573 50.8
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 5.7e-132 475.3 587 48.4
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.3e-131 474.2 590 49.3
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 1.1e-130 471.1 564 51.6
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 2.4e-130 469.9 584 50.2
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 5.4e-130 468.8 608 47.5
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 2.7e-129 466.5 602 47.3
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 5.9e-129 465.3 584 49.7
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 1.1e-127 461.1 579 49.7
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 5.5e-127 458.8 585 49.7
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 1.0e-125 454.5 588 47.6
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 1.0e-125 454.5 589 46.7
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 1.0e-125 454.5 557 49.7
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 4.0e-125 452.6 584 48.5
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 2.6e-124 449.9 560 52.3
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 5.7e-124 448.7 584 48.3
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 9.8e-124 448.0 500 53.4
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 2.0e-121 440.3 564 48.2
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 2.7e-121 439.9 613 47.3
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 1.0e-120 438.0 598 46.3
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 1.3e-120 437.6 524 51.5
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 5.6e-119 432.2 581 47.8
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 2.8e-118 429.9 658 45.3
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 4.4e-116 422.5 480 52.5
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 2.2e-115 420.2 521 49.1
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 5.4e-114 415.6 499 51.5
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 9.2e-114 414.8 537 47.5
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 1.9e-111 407.1 339 67.8
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 2.8e-110 403.3 507 51.7
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 3.9e-104 382.9 410 55.4
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 3.6e-102 376.3 587 41.9
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 8.1e-102 375.2 553 44.1
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 1.2e-100 371.3 565 42.5
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 6.4e-99 365.5 501 45.9
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 1.6e-97 360.9 530 43.4
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 5.1e-96 355.9 217 82.5
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 5.1e-96 355.9 207 83.1
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 3.6e-94 349.7 382 55.0
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 3.4e-92 343.2 217 79.7
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 3.4e-92 343.2 217 79.7
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 4.9e-91 339.3 218 81.2
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 6.0e-89 332.4 482 46.7
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 8.6e-88 328.6 206 78.6
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 4.0e-85 319.7 261 67.8
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 9.0e-85 318.5 183 86.3
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 1.4e-82 311.2 468 46.6
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 1.2e-76 291.6 507 41.2
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 2.4e-74 283.9 235 65.5
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 5.1e-72 276.2 199 68.3
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 1.1e-71 275.0 150 86.7
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 1.3e-59 235.0 543 32.6
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 1.9e-58 231.1 398 39.7
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 6.0e-57 226.1 134 80.6
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 5.1e-56 223.0 412 41.0
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.3e-54 218.4 310 44.5
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.2e-54 217.6 134 82.1
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 3.1e-53 213.8 385 41.0
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 5.3e-53 213.0 134 79.9
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 3.4e-52 210.3 171 66.1
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 1.7e-51 208.0 381 39.1
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 5.0e-51 206.5 222 49.5
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 1.1e-50 205.3 120 83.3
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 7.9e-49 199.1 119 85.7
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 1.4e-48 198.4 438 37.7
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.4e-42 178.3 398 35.9
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 2.4e-37 161.0 338 34.9
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 2.4e-37 161.0 260 42.7
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-32 144.4 171 48.5
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 6.3e-30 136.3 91 75.8
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.4e-29 134.4 81 84.0
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 2.0e-23 114.8 202 35.6
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 4.4e-23 113.6 240 35.8
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.7e-22 110.5 172 41.3
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 6.3e-22 109.8 494 25.9
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 9.1e-21 105.9 204 34.3
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 4.2e-18 97.1 186 32.3
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 1.2e-17 95.5 249 29.3
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 3.0e-16 90.9 123 44.7
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 8.8e-16 89.4 52 84.6
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.5e-15 88.6 249 29.7
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 2.8e-14 84.3 44 88.6
Peaxi162Scf00351g00526 Petunia axillaris HOM05D004776 ORTHO05D005777 4.1e-13 80.5 255 30.2
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 1.8e-08 65.1 82 46.3
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 2.6e-07 61.2 200 28.5


User provided reference genes

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