Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 2240.3 1161 100.0
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 2219.9 1161 99.0
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 2178.7 1162 96.3
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 2178.3 1162 96.3
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 2160.2 1210 93.5
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 2159.4 1161 95.7
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 2042.3 1165 89.7
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 2034.2 1165 89.6
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 2014.2 1165 89.3
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 2008.4 1166 88.7
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1994.9 1168 87.9
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1992.6 1167 87.6
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1984.1 1170 86.6
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1978.0 1168 87.2
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1976.4 1171 86.7
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1972.6 1172 86.4
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1965.3 1167 86.5
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1964.9 1168 86.4
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1962.2 1164 86.3
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1959.1 1165 85.9
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1958.7 1164 87.6
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1956.4 1168 86.0
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1953.7 1173 85.8
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1950.6 1177 85.9
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1947.2 1166 86.1
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1942.9 1172 85.8
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1941.8 1166 84.9
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1940.6 1164 85.8
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1939.5 1164 84.2
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1936.4 1165 84.8
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1934.8 1174 85.3
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1932.9 1164 83.7
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1930.6 1166 83.5
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1928.3 1164 85.3
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1927.9 1177 84.7
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1926.8 1164 85.2
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1926.8 1166 84.4
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1926.8 1164 84.1
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1925.6 1165 84.7
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1923.7 1164 83.9
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1923.3 1165 84.9
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1921.0 1169 84.6
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1919.1 1171 84.5
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1918.3 1171 84.5
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1916.7 1203 83.0
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1916.7 1164 83.6
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1910.6 1203 82.5
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1910.2 1171 84.2
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1907.9 1166 84.1
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1907.1 1174 83.4
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1906.7 1164 84.2
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1906.7 1168 83.9
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1905.6 1093 88.2
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1903.6 1164 83.2
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1903.6 1165 84.6
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1901.3 1173 83.3
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1900.2 1164 83.8
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1898.2 1169 83.4
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1896.3 1097 87.0
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1893.2 1166 83.1
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1893.2 1169 83.1
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1890.5 1168 83.2
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1889.8 1175 83.2
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1886.7 1173 82.4
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1884.4 1196 82.6
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1884.0 1175 82.3
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1882.8 1168 83.1
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1881.7 1166 82.5
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1881.3 1167 82.6
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1876.3 1177 81.7
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1871.3 1154 84.3
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1869.7 1171 82.4
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1864.0 1172 82.3
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1863.2 1166 82.2
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1862.8 1180 81.7
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1862.8 1169 82.0
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1862.0 1176 82.1
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1860.5 1179 81.6
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1860.1 1168 82.2
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1859.0 1172 82.0
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1859.0 1172 82.0
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1858.6 1172 81.7
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1858.2 1168 82.6
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1854.3 1168 82.0
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1854.0 1191 80.7
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1853.6 1166 80.4
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1838.5 1325 74.8
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1837.0 1175 81.4
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1823.1 1096 83.6
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1822.0 1174 80.2
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1786.5 1195 79.2
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1751.5 1168 75.2
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1721.8 1155 77.2
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1706.4 1163 75.8
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1681.4 1170 75.1
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1653.6 994 85.4
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1631.7 1166 71.3
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1630.9 1165 70.7
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1590.9 1148 74.7
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1543.1 940 83.4
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1472.2 1159 65.7
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1458.4 838 88.4
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1452.6 1158 63.9
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1402.9 1159 62.6
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1397.1 1162 62.0
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1391.7 838 83.9
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1381.7 1176 61.1
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1348.2 799 85.4
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1292.3 797 80.8
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1227.6 786 78.4
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1186.8 695 88.5
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1108.6 919 60.9
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 4.9e-304 1048.1 1191 46.9
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 1.2e-297 1026.9 576 91.7
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 3.5e-294 1015.4 652 79.8
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.0e-285 987.3 745 71.7
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 3.7e-275 952.2 601 83.0
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 2.6e-273 946.0 546 88.6
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 6.5e-272 941.4 591 82.2
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 7.2e-255 884.8 519 82.5
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 8.3e-251 871.3 625 72.0
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 1.1e-221 774.6 479 83.7
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 1.3e-219 767.7 465 80.9
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 3.1e-205 719.9 438 86.3
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 2.0e-148 531.2 354 80.8
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 5.9e-148 529.6 357 77.3
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 1.6e-113 415.2 378 56.6
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 3.6e-113 414.1 283 73.5
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 1.1e-90 339.3 195 86.7
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 2.5e-58 231.9 168 74.4
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 8.7e-51 206.8 143 76.9
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 3.8e-46 191.4 117 87.2
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 8.5e-38 163.7 87 92.0
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 2.7e-36 158.7 103 81.6
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 1.4e-35 156.4 109 77.1
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 3.0e-35 155.2 96 86.5
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 1.5e-34 152.9 78 89.7
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 1.2e-18 100.1 132 44.7
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 1.5e-18 99.8 132 45.5
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 1.4e-16 93.2 97 67.0
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 9.1e-16 90.5 84 59.5
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 3.8e-14 85.1 51 78.4
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 5.0e-14 84.7 51 78.4
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 6.5e-14 84.3 51 78.4
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 6.1e-12 77.8 332 28.0
TAR381G0591 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.7e-07 62.4 37 75.7


User provided reference genes

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