Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 1.3e-31 139.8 65 100.0
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 1.3e-31 139.8 65 100.0
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 3.4e-29 131.7 64 95.3
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 2.5e-27 125.6 64 92.2
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 5.5e-27 124.4 64 90.6
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 1.0e-20 103.6 66 71.2
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.7e-20 102.8 64 70.3
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 1.7e-20 102.8 64 70.3
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 7.2e-19 97.4 64 68.8
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 1.6e-18 96.3 61 63.9
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 1.6e-18 96.3 66 65.2
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 2.7e-18 95.5 65 60.0
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 2.7e-18 95.5 67 64.2
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 4.7e-18 94.7 66 65.2
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 8.0e-18 94.0 67 67.2
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 8.0e-18 94.0 60 68.3
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 1.0e-17 93.6 63 66.7
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 1.0e-17 93.6 66 60.6
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 1.4e-17 93.2 63 65.1
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 4.0e-17 91.7 63 63.5
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 4.0e-17 91.7 69 59.4
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 5.2e-17 91.3 63 61.9
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 5.2e-17 91.3 66 65.2
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 5.2e-17 91.3 66 65.2
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.6e-16 89.0 66 63.6
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 2.6e-16 89.0 65 61.5
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 3.3e-16 88.6 61 65.6
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 5.7e-16 87.8 66 65.2
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 7.5e-16 87.4 66 56.1
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 7.5e-16 87.4 61 63.9
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 7.5e-16 87.4 64 62.5
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 9.7e-16 87.0 66 63.6
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 4.8e-15 84.7 63 63.5
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 8.2e-15 84.0 63 58.7
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 8.2e-15 84.0 66 57.6
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 1.4e-14 83.2 66 57.6
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 2.4e-14 82.4 63 60.3
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 3.1e-14 82.0 63 60.3
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 5.3e-14 81.3 65 53.8
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 7.0e-14 80.9 66 57.6
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 9.1e-14 80.5 64 57.8
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 1.6e-13 79.7 68 52.9
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 2.0e-13 79.3 65 53.8
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 5.9e-13 77.8 68 52.9
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 5.9e-13 77.8 55 60.0
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 7.7e-13 77.4 67 59.7
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 1.3e-12 76.6 62 58.1
Peaxi162Scf00078g00515 Petunia axillaris HOM05D004137 ORTHO05D004804 1.3e-12 76.6 39 89.7
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 2.9e-12 75.5 63 61.9
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 3.8e-12 75.1 65 50.8
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 6.5e-12 74.3 66 48.5
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 6.5e-12 74.3 68 54.4
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 8.5e-12 73.9 63 49.2
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 1.9e-11 72.8 61 52.5
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 1.9e-11 72.8 61 50.8
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 1.9e-11 72.8 68 54.4
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 4.2e-11 71.6 64 46.9
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 4.2e-11 71.6 64 46.9
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 4.2e-11 71.6 64 46.9
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 4.2e-11 71.6 64 46.9
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 4.2e-11 71.6 64 46.9
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 5.5e-11 71.2 63 57.1
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 7.2e-11 70.9 63 47.6
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 7.2e-11 70.9 66 50.0
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 9.4e-11 70.5 64 51.6
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 9.4e-11 70.5 65 46.2
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 9.4e-11 70.5 65 46.2
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.2e-10 70.1 67 44.8
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 2.1e-10 69.3 68 44.1
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 2.1e-10 69.3 61 52.5
Lalb_Chr13g0295561 Lupinus albus HOM05D004137 ORTHO05D004804 2.7e-10 68.9 56 53.6
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 3.6e-10 68.6 68 42.6
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 3.6e-10 68.6 68 42.6
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 4.7e-10 68.2 67 47.8
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 4.7e-10 68.2 68 44.1
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 6.1e-10 67.8 62 56.5
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 8.0e-10 67.4 63 55.6
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 1.8e-09 66.2 63 54.0
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 1.8e-09 66.2 64 45.3
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.8e-09 66.2 63 44.4
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 1.8e-09 66.2 68 48.5
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 1.8e-09 66.2 68 48.5
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 2.3e-09 65.9 64 45.3
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.3e-09 65.9 63 55.6
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 3.0e-09 65.5 64 45.3
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 4.0e-09 65.1 63 52.4
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 5.2e-09 64.7 64 43.8
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 5.2e-09 64.7 63 52.4
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 5.2e-09 64.7 64 43.8
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 5.2e-09 64.7 63 52.4
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 6.8e-09 64.3 63 52.4
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 6.8e-09 64.3 63 52.4
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 6.8e-09 64.3 63 52.4
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 8.8e-09 63.9 64 43.8
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 1.2e-08 63.5 68 42.6
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 1.5e-08 63.2 66 50.0
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 1.5e-08 63.2 63 54.0
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 1.5e-08 63.2 66 50.0
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 2.0e-08 62.8 68 39.7
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 2.0e-08 62.8 63 54.0
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 2.0e-08 62.8 66 50.0
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 2.0e-08 62.8 68 39.7
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 2.0e-08 62.8 66 50.0
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 2.0e-08 62.8 60 51.7
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.0e-08 62.8 63 50.8
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 2.0e-08 62.8 65 43.1
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 2.6e-08 62.4 68 39.7
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 3.4e-08 62.0 63 50.8
Glyma.08G125200 Glycine max HOM05D004137 ORTHO05D004804 3.4e-08 62.0 65 46.2
Lalb_Chr07g0185901 Lupinus albus HOM05D004137 ORTHO05D004804 3.4e-08 62.0 59 44.1
Phvul.002G247400 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 3.4e-08 62.0 60 46.7
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 4.4e-08 61.6 63 46.0
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 5.7e-08 61.2 63 50.8
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 5.7e-08 61.2 63 50.8
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 7.5e-08 60.8 63 49.2
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 7.5e-08 60.8 63 50.8
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 7.5e-08 60.8 63 49.2
VMungo1383G2992 Vigna mungo HOM05D001291 ORTHO05D004804 7.5e-08 60.8 60 46.7
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 2.2e-07 59.3 63 41.3
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 2.8e-07 58.9 63 49.2
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 2.8e-07 58.9 65 40.0
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 6.3e-07 57.8 61 45.9
BolC3t13997H Brassica oleracea HOM05D004137 ORTHO05D004804 6.3e-07 57.8 61 45.9
Gohir.D12G178750 Gossypium hirsutum HOM05D004137 ORTHO05D004804 6.3e-07 57.8 63 39.7
Gorai.008G191500 Gossypium raimondii HOM05D004137 ORTHO05D004804 6.3e-07 57.8 63 39.7
CARHR270170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 1.1e-06 57.0 69 44.9
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 1.8e-06 56.2 63 49.2
vmacro20990 Vaccinium macrocarpon HOM05D004137 ORTHO05D004804 1.8e-06 56.2 61 45.9
Ciclev10023092m.g Citrus clementina HOM05D004137 ORTHO05D004804 7.0e-06 54.3 58 39.7
arahy.Tifrunner.gnm1.ann1.K19UZV Arachis hypogaea HOM05D004137 ORTHO05D004804 9.1e-06 53.9 53 50.9
PGSC0003DMG400023737 Solanum tuberosum HOM05D004137 ORTHO05D004804 9.1e-06 53.9 65 41.5


User provided reference genes

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