Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005924g0010 Nicotiana tabacum HOM05D005874 ORTHO05D007206 1.2e-42 176.0 81 100.0
Nitab4.5_0000176g0130 Nicotiana tabacum HOM05D005874 ORTHO05D007206 9.8e-42 172.9 81 97.5
Sopen08g010120 Solanum pennellii HOM05D005874 ORTHO05D007206 1.1e-40 169.5 81 93.8
Solyc08g029200.3 Solanum lycopersicum HOM05D005874 ORTHO05D007206 2.4e-40 168.3 81 92.6
CAN.G56.14 Capsicum annuum HOM05D005874 ORTHO05D007206 2.0e-39 165.2 81 91.4
Peaxi162Scf00071g00714 Petunia axillaris HOM05D005874 ORTHO05D007206 4.2e-37 157.5 79 88.6
Hma1.2p1_0071F.1_g037960 Hydrangea macrophylla HOM05D005874 ORTHO05D007206 4.1e-32 141.0 81 75.3
QL03p002925 Quercus lobata HOM05D005874 ORTHO05D007206 5.4e-32 140.6 81 76.5
QL03p003516 Quercus lobata HOM05D005874 ORTHO05D007206 5.4e-32 140.6 81 76.5
Lsat_1_v5_gn_4_139320 Lactuca sativa HOM05D005874 ORTHO05D007206 7.0e-32 140.2 81 77.8
HanXRQChr09g0254601 Helianthus annuus HOM05D005874 ORTHO05D007206 9.2e-32 139.8 81 77.8
Cc02_g32810 Coffea canephora HOM05D005874 ORTHO05D007206 1.2e-31 139.4 81 79.0
RcHm_v2.0_Chr3g0453421 Rosa chinensis HOM05D005874 ORTHO05D007206 2.0e-31 138.7 81 77.8
CSS0017417 Camellia sinensis var. sinensis HOM05D005874 ORTHO05D007206 2.7e-31 138.3 81 75.3
Oeu052135.1 Olea europaea HOM05D005874 ORTHO05D007206 2.7e-31 138.3 81 80.2
Ciclev10001418m.g Citrus clementina HOM05D005874 ORTHO05D007206 3.5e-31 137.9 81 72.8
MD04G1213200 Malus domestica HOM05D005874 ORTHO05D007206 3.5e-31 137.9 81 79.0
MD12G1227400 Malus domestica HOM05D005874 ORTHO05D007206 3.5e-31 137.9 81 77.8
FAN05G2497 Fragaria x ananassa HOM05D005874 ORTHO05D007206 4.5e-31 137.5 81 76.5
CiPaw.07G012300 Carya illinoinensis HOM05D005874 ORTHO05D007206 5.9e-31 137.1 81 72.8
FvH4_6g04920 Fragaria vesca HOM05D005874 ORTHO05D007206 1.0e-30 136.3 81 75.3
FAN14G1317 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.0e-30 136.3 81 75.3
FAN05G4189 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.3e-30 136.0 81 75.3
Phvul.006G096000 Phaseolus vulgaris HOM05D005874 ORTHO05D007206 1.3e-30 136.0 81 74.1
Prupe.6G333100 Prunus persica HOM05D005874 ORTHO05D007206 1.7e-30 135.6 81 75.3
SGA_v2.0_scaffold21G09411 Striga asiatica HOM05D005874 ORTHO05D007206 1.7e-30 135.6 81 76.5
Glyma.19G239400 Glycine max HOM05D005874 ORTHO05D007206 2.3e-30 135.2 81 74.1
TAR362G0076 Trochodendron aralioides HOM05D005874 ORTHO05D007206 3.8e-30 134.4 81 70.4
vmacro05048 Vaccinium macrocarpon HOM05D005874 ORTHO05D007206 3.8e-30 134.4 81 71.6
Glyma.03G242000 Glycine max HOM05D005874 ORTHO05D007206 5.0e-30 134.0 81 72.8
Dinv40230 Davidia involucrata HOM05D005874 ORTHO05D007206 6.6e-30 133.7 81 70.4
Migut.L01513 Erythranthe guttata HOM05D005874 ORTHO05D007206 6.6e-30 133.7 81 72.8
GSVIVG01022009001 Vitis vinifera HOM05D005874 ORTHO05D007206 6.6e-30 133.7 81 71.6
arahy.Tifrunner.gnm1.ann1.MWM6LR Arachis hypogaea HOM05D005874 ORTHO05D007206 8.6e-30 133.3 81 72.8
arahy.Tifrunner.gnm1.ann1.QVQE66 Arachis hypogaea HOM05D005874 ORTHO05D007206 8.6e-30 133.3 81 72.8
Dinv22927 Davidia involucrata HOM05D005874 ORTHO05D007206 8.6e-30 133.3 81 70.4
ECA232G3849 Erigeron canadensis HOM05D005874 ORTHO05D007206 1.1e-29 132.9 82 73.2
FAN09G3845 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.1e-29 132.9 81 74.1
CANSAT54G0668 Cannabis sativa HOM05D005874 ORTHO05D007206 1.9e-29 132.1 81 70.4
Cpa.g.sc84.114 Carica papaya HOM05D005874 ORTHO05D007206 3.3e-29 131.3 81 74.1
Hund07023 Selenicereus undatus HOM05D005874 ORTHO05D007206 3.3e-29 131.3 81 74.1
Lj1g0003731 Lotus japonicus HOM05D005874 ORTHO05D007206 4.3e-29 131.0 81 71.6
VMungo0540G0326 Vigna mungo HOM05D005874 ORTHO05D007206 4.3e-29 131.0 81 72.8
Medtr7g114080 Medicago truncatula HOM05D005874 ORTHO05D007206 5.6e-29 130.6 81 72.8
Rhsim07G0178000 Rhododendron simsii HOM05D005874 ORTHO05D007206 7.3e-29 130.2 81 69.1
Lalb_Chr15g0077001 Lupinus albus HOM05D005874 ORTHO05D007206 1.6e-28 129.0 81 70.4
Haze_04267 Corylus avellana HOM05D005874 ORTHO05D007206 4.7e-28 127.5 81 66.7
Actinidia05739 Actinidia chinensis HOM05D005874 ORTHO05D007206 6.1e-28 127.1 81 66.7
Sc06g0003460 Simmondsia chinensis HOM05D005874 ORTHO05D007206 6.1e-28 127.1 79 70.9
MELO3C014079.2 Cucumis melo HOM05D005874 ORTHO05D007206 8.0e-28 126.7 81 70.4
Gohir.D13G178100 Gossypium hirsutum HOM05D005874 ORTHO05D007206 1.0e-27 126.3 81 67.9
Gorai.013G203400 Gossypium raimondii HOM05D005874 ORTHO05D007206 1.0e-27 126.3 81 67.9
PSO832G1738 Papaver somniferum HOM05D005874 ORTHO05D007206 1.0e-27 126.3 81 67.9
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 1.0e-27 126.3 81 69.1
Duzib128G0205 Durio zibethinus HOM05D005874 ORTHO05D007206 1.4e-27 125.9 81 69.1
Psat3g009240 Pisum sativum HOM05D005874 ORTHO05D007206 1.4e-27 125.9 81 71.6
TPR.G21789 Trifolium pratense HOM05D005874 ORTHO05D007206 1.4e-27 125.9 81 71.6
CsaV3_3G003940 Cucumis sativus L. HOM05D005874 ORTHO05D007206 1.8e-27 125.6 81 69.1
Manes.08G125000 Manihot esculenta HOM05D005874 ORTHO05D007206 1.8e-27 125.6 81 64.2
THA.LOC104802814 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 1.8e-27 125.6 81 70.4
MSTRG.10544 Avicennia marina HOM05D005874 ORTHO05D007206 2.3e-27 125.2 81 69.1
Atru.chr2.537 Acer truncatum HOM05D005874 ORTHO05D007206 3.0e-27 124.8 81 69.1
Carub.0003s0419 Capsella rubella HOM05D005874 ORTHO05D007206 3.0e-27 124.8 81 65.4
PSO210G2121 Papaver somniferum HOM05D005874 ORTHO05D007206 3.0e-27 124.8 81 66.7
Actinidia30901 Actinidia chinensis HOM05D005874 ORTHO05D007206 4.0e-27 124.4 81 66.7
Atru.chr2.564 Acer truncatum HOM05D005874 ORTHO05D007206 5.2e-27 124.0 81 69.1
Thhalv10004370m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 8.9e-27 123.2 81 66.7
THA.LOC104818669 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 8.9e-27 123.2 81 66.7
EL10Ac4g09284 Beta vulgaris HOM05D005874 ORTHO05D007206 1.2e-26 122.9 81 66.7
CDE12G0821 Ceratophyllum demersum HOM05D005874 ORTHO05D007206 1.5e-26 122.5 81 65.4
TWI36G0483 Tripterygium wilfordii HOM05D005874 ORTHO05D007206 3.4e-26 121.3 81 63.0
ATR0487G009 Amborella trichopoda HOM05D005874 ORTHO05D007206 4.4e-26 120.9 80 66.2
Aqoxy5G00596 Aquilegia oxysepala HOM05D005874 ORTHO05D007206 4.4e-26 120.9 81 65.4
Thhalv10020879m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 5.7e-26 120.6 81 65.4
PGR031G1977 Punica granatum HOM05D005874 ORTHO05D007206 5.7e-26 120.6 81 67.9
Sp2g20520 Schrenkiella parvula HOM05D005874 ORTHO05D007206 1.3e-25 119.4 81 66.7
Ah.04g159940 Amaranthus hybridus HOM05D005874 ORTHO05D007206 2.2e-25 118.6 81 64.2
Gohir.A13G172200 Gossypium hirsutum HOM05D005874 ORTHO05D007206 2.2e-25 118.6 81 65.4
Aa31LG5G15480 Aethionema arabicum HOM05D005874 ORTHO05D007206 3.7e-25 117.9 81 63.0
HPP92_003153 Vanilla planifolia HOM05D005874 ORTHO05D007206 4.9e-25 117.5 81 60.5
Sabra05G0040000 Salix brachista HOM05D005874 ORTHO05D007206 1.1e-24 116.3 81 61.7
unitig_578.g16415 Utricularia gibba HOM05D005874 ORTHO05D007206 1.1e-24 116.3 76 71.1
C05p62300 Brassica napus HOM05D005874 ORTHO05D007206 1.4e-24 115.9 81 63.0
BcaC05g29976 Brassica carinata HOM05D005874 ORTHO05D007206 1.8e-24 115.5 81 61.7
Aa31LG11G9040 Aethionema arabicum HOM05D005874 ORTHO05D007206 2.4e-24 115.2 81 61.7
BolC5t34886H Brassica oleracea HOM05D005874 ORTHO05D007206 3.2e-24 114.8 81 61.7
Potri.005G041000 Populus trichocarpa HOM05D005874 ORTHO05D007206 3.2e-24 114.8 81 59.3
BraA05t22992Z Brassica rapa HOM05D005874 ORTHO05D007206 4.1e-24 114.4 81 61.7
Eucgr.B02032 Eucalyptus grandis HOM05D005874 ORTHO05D007206 1.2e-23 112.8 81 65.4
Zm00001eb394310 Zea mays HOM05D005874 ORTHO05D007206 2.0e-23 112.1 81 65.4
A09p05220 Brassica napus HOM05D005874 ORTHO05D007206 3.5e-23 111.3 81 64.2
BraA09t36161Z Brassica rapa HOM05D005874 ORTHO05D007206 3.5e-23 111.3 81 64.2
CARHR185900 Cardamine hirsuta HOM05D005874 ORTHO05D007206 3.5e-23 111.3 79 63.3
A05p42610 Brassica napus HOM05D005874 ORTHO05D007206 4.6e-23 110.9 81 60.5
BcaB04g19660 Brassica carinata HOM05D005874 ORTHO05D007206 5.9e-23 110.5 81 63.0
BcaC04g23688 Brassica carinata HOM05D005874 ORTHO05D007206 5.9e-23 110.5 81 63.0
BcaB04g19663 Brassica carinata HOM05D005874 ORTHO05D007206 7.8e-23 110.2 81 63.0
BcaC04g23685 Brassica carinata HOM05D005874 ORTHO05D007206 7.8e-23 110.2 81 63.0
C09p05680 Brassica napus HOM05D005874 ORTHO05D007206 7.8e-23 110.2 81 63.0
BolC9t53497H Brassica oleracea HOM05D005874 ORTHO05D007206 7.8e-23 110.2 81 63.0
Os03g0363900 Oryza sativa ssp. japonica HOM05D005874 ORTHO05D007206 6.6e-22 107.1 81 61.7
AagrBONN_evm.TU.Sc2ySwM_362.837 Anthoceros agrestis HOM05D005874 ORTHO05D007206 2.9e-17 91.7 78 47.4
SMO356G0262 Selaginella moellendorffii HOM05D005874 ORTHO05D007206 9.5e-13 76.6 78 43.6
Mapoly0004s0142 Marchantia polymorpha HOM05D005874 ORTHO05D007206 6.4e-09 63.9 82 39.0
CBR_g48996 Chara braunii HOM05D000019 ORTHO05D001702 1.4e-08 62.8 71 45.1
Lj9A677G37 Lonicera japonica HOM05D005874 ORTHO05D007206 2.7e-07 58.5 33 63.6
Lj9A680G39 Lonicera japonica HOM05D005874 ORTHO05D007206 3.5e-07 58.2 33 63.6
COL.COLO4_13564 Corchorus olitorius HOM05D005874 ORTHO05D007206 6.0e-07 57.4 29 75.9
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 7.8e-07 57.0 31 67.7
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 1.3e-06 56.2 41 53.7
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 1.3e-06 56.2 41 53.7
arahy.Tifrunner.gnm1.ann1.IHLS5N Arachis hypogaea HOM05D010413 ORTHO05D014444 1.3e-06 56.2 41 53.7
BcaC02g11489 Brassica carinata HOM05D005874 ORTHO05D007206 1.7e-06 55.8 47 53.2
C04p14840 Brassica napus HOM05D005874 ORTHO05D007206 1.7e-06 55.8 47 53.2
BolC4t23058H Brassica oleracea HOM05D008292 ORTHO05D003352 1.7e-06 55.8 47 53.2
Thecc.05G296800 Theobroma cacao HOM05D005874 ORTHO05D007206 2.3e-06 55.5 29 69.0
arahy.Tifrunner.gnm1.ann1.J0URVC Arachis hypogaea HOM05D010413 ORTHO05D014444 5.1e-06 54.3 41 51.2
arahy.Tifrunner.gnm1.ann1.LT36IY Arachis hypogaea HOM05D010413 ORTHO05D014444 5.1e-06 54.3 41 48.8
arahy.Tifrunner.gnm1.ann1.6EF6C9 Arachis hypogaea HOM05D010413 ORTHO05D014444 8.6e-06 53.5 41 51.2


User provided reference genes

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