Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 4.4e-101 371.3 189 100.0
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 2.2e-100 369.0 189 98.4
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 5.7e-93 344.4 189 92.1
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 5.7e-93 344.4 189 92.1
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 5.7e-93 344.4 189 92.1
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 6.3e-92 340.9 189 90.5
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 2.2e-89 332.4 204 84.3
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 3.4e-85 318.5 186 86.0
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 4.8e-84 314.7 189 83.1
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 4.8e-84 314.7 188 84.0
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 4.8e-84 314.7 188 84.0
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 1.4e-83 313.2 186 84.4
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 7.0e-83 310.8 189 83.1
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 1.3e-81 306.6 189 81.5
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 1.3e-81 306.6 189 82.0
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 2.5e-80 302.4 188 80.9
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 9.5e-80 300.4 186 81.2
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 9.5e-80 300.4 186 81.2
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 1.6e-79 299.7 189 76.7
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 2.3e-78 295.8 187 80.7
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 3.0e-78 295.4 189 79.4
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 3.0e-78 295.4 188 80.9
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 4.0e-78 295.0 185 78.4
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 5.2e-78 294.7 188 80.9
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 6.8e-78 294.3 189 79.4
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 8.9e-78 293.9 189 77.8
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 8.9e-78 293.9 189 77.8
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 2.6e-77 292.4 187 77.5
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 2.6e-77 292.4 187 78.6
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 2.6e-77 292.4 189 77.2
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 4.4e-77 291.6 189 76.7
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 1.3e-76 290.0 188 79.8
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 2.8e-76 288.9 207 72.5
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 6.3e-76 287.7 185 76.2
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 1.1e-75 287.0 185 78.4
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.4e-75 286.6 185 76.8
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.4e-75 286.6 185 76.8
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 2.4e-75 285.8 185 77.3
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 4.1e-75 285.0 188 78.2
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 7.0e-75 284.3 188 79.3
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 1.2e-74 283.5 185 76.8
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 1.6e-74 283.1 189 75.7
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 1.6e-74 283.1 186 76.3
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 2.0e-74 282.7 209 72.2
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 3.5e-74 282.0 186 75.8
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 7.8e-74 280.8 189 72.0
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 7.8e-74 280.8 189 77.2
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 7.8e-74 280.8 189 77.2
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 1.0e-73 280.4 189 74.6
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 3.8e-73 278.5 186 74.2
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 6.6e-73 277.7 189 73.5
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.1e-72 276.9 189 76.2
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 4.3e-72 275.0 182 74.7
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 4.3e-72 275.0 190 73.7
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 5.6e-72 274.6 185 74.6
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 9.5e-72 273.9 189 73.0
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 2.8e-71 272.3 187 71.1
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 4.7e-71 271.6 189 75.1
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 4.7e-71 271.6 187 70.1
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 3.1e-70 268.9 186 74.2
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 2.6e-69 265.8 185 71.4
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 4.4e-69 265.0 178 76.4
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 4.4e-69 265.0 159 84.9
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 5.8e-69 264.6 189 71.4
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 5.8e-69 264.6 186 73.7
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 7.5e-69 264.2 189 70.4
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 9.8e-69 263.8 186 73.7
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 9.8e-69 263.8 182 69.2
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 1.7e-68 263.1 182 73.1
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 3.7e-68 261.9 189 70.9
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 3.7e-68 261.9 182 71.4
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 4.9e-68 261.5 184 69.6
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 4.9e-68 261.5 189 70.4
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 8.3e-68 260.8 185 73.0
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 8.3e-68 260.8 185 70.3
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 8.3e-68 260.8 189 70.4
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 2.4e-67 259.2 189 70.4
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 5.4e-67 258.1 187 67.9
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 7.0e-67 257.7 189 70.4
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 1.2e-66 256.9 189 68.8
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 2.7e-66 255.8 190 67.4
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 4.6e-66 255.0 203 66.0
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 7.8e-66 254.2 203 65.5
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 1.3e-65 253.4 175 70.3
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 1.3e-65 253.4 152 81.6
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 1.3e-65 253.4 184 65.8
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 1.7e-65 253.1 157 81.5
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 2.3e-65 252.7 185 67.6
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 3.9e-65 251.9 187 66.8
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 3.9e-65 251.9 178 71.3
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 1.9e-64 249.6 177 67.8
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 1.9e-64 249.6 189 69.8
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 1.9e-64 249.6 204 65.2
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 3.3e-64 248.8 189 68.3
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 9.5e-64 247.3 271 52.4
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 1.2e-63 246.9 183 67.2
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 2.9e-60 235.7 163 73.6
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 1.9e-59 233.0 188 62.8
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.1e-58 229.6 178 62.4
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 3.9e-57 225.3 186 59.1
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 5.1e-57 224.9 188 60.6
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 4.3e-56 221.9 207 61.4
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 2.6e-53 212.6 185 57.8
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 2.2e-52 209.5 185 56.2
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 1.4e-51 206.8 185 56.2
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 2.4e-51 206.1 185 55.1
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 5.4e-51 204.9 185 62.7
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 1.6e-50 203.4 185 55.1
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 6.0e-50 201.4 185 55.1
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 5.1e-49 198.4 185 54.6
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 9.5e-48 194.1 185 54.6
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 8.1e-47 191.0 185 54.6
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 6.8e-46 188.0 185 53.5
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 2.0e-45 186.4 185 53.0
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 2.0e-45 186.4 185 53.0
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 2.0e-45 186.4 185 53.0
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 7.6e-45 184.5 183 58.5
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 4.9e-44 181.8 185 51.9
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 4.2e-43 178.7 185 50.8
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 4.2e-43 178.7 185 50.8
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 6.0e-42 174.9 115 79.1
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 2.1e-39 166.4 148 58.1
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.5e-37 160.2 155 59.4
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 1.4e-35 153.7 185 47.0
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 5.1e-33 145.2 109 69.7
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 2.4e-30 136.3 78 84.6
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 1.2e-26 124.0 102 65.7
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 1.1e-24 117.5 81 75.3
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 1.3e-23 114.0 84 70.2
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.6e-23 113.6 87 62.1
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 6.2e-23 111.7 73 72.6
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 2.9e-20 102.8 155 40.0
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 6.4e-20 101.7 76 61.8
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 8.4e-20 101.3 81 60.5
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.9e-19 100.1 76 60.5
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 4.2e-19 99.0 151 39.7
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 2.1e-18 96.7 159 34.6
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 3.0e-17 92.8 61 75.4
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 2.8e-15 86.3 119 39.5
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 6.2e-15 85.1 94 53.2
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.1e-11 74.3 65 61.5
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.4e-11 73.9 91 51.6


User provided reference genes

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