Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005860g0040 Nicotiana tabacum HOM05D000239 ORTHO05D016857 1.1e-57 226.5 123 100.0
Solyc08g065230.1 Solanum lycopersicum HOM05D000239 ORTHO05D016857 5.5e-36 154.5 102 82.4
Sopen08g018850 Solanum pennellii HOM05D000239 ORTHO05D000484 5.5e-36 154.5 102 82.4
PGSC0003DMG400029939 Solanum tuberosum HOM05D000239 ORTHO05D016857 6.0e-35 151.0 101 82.2
Nitab4.5_0003627g0050 Nicotiana tabacum HOM05D000239 ORTHO05D016857 1.6e-27 126.3 64 95.3
Dinv22900 Davidia involucrata HOM05D000239 ORTHO05D000484 2.9e-21 105.5 65 76.9
Dinv27983 Davidia involucrata HOM05D000239 ORTHO05D000484 8.5e-21 104.0 95 61.1
CSS0005070 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 1.9e-20 102.8 65 76.9
Rhsim07G0142400 Rhododendron simsii HOM05D000239 ORTHO05D000484 2.5e-20 102.4 65 75.4
CSS0047895 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 5.5e-20 101.3 65 75.4
CSS0034686 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 7.2e-20 100.9 65 73.8
CSS0050474 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D016857 9.3e-20 100.5 64 75.0
Lj7C272T1 Lonicera japonica HOM05D000239 ORTHO05D000484 4.6e-19 98.2 70 68.6
Lj7C275G7 Lonicera japonica HOM05D000239 ORTHO05D000484 4.6e-19 98.2 70 68.6
MBI01_g09954_MAGBIO Magnolia biondii HOM05D000239 ORTHO05D000484 1.0e-18 97.1 60 80.0
Hma1.2p1_0450F.1_g155536 Hydrangea macrophylla HOM05D000239 ORTHO05D000484 8.8e-18 94.0 65 66.2
Hma1.2p1_0450F.1_g155560 Hydrangea macrophylla HOM05D000239 ORTHO05D000484 8.8e-18 94.0 65 66.2
Nn8g38885 Nelumbo nucifera HOM05D000239 ORTHO05D000484 1.5e-17 93.2 73 67.1
SGA_v2.0_scaffold169G38692 Striga asiatica HOM05D000239 ORTHO05D000484 1.9e-17 92.8 74 64.9
Nn6g35458 Nelumbo nucifera HOM05D000239 ORTHO05D000484 9.7e-17 90.5 72 66.7
Aqoxy7G01227 Aquilegia oxysepala HOM05D000239 ORTHO05D000484 1.3e-16 90.1 70 68.6
Cpa.g.sc7.171 Carica papaya HOM05D000239 ORTHO05D000484 1.3e-16 90.1 89 56.2
Cc08_g10580 Coffea canephora HOM05D000239 ORTHO05D000484 3.7e-16 88.6 62 75.8
DCAR_004427 Daucus carota HOM05D000239 ORTHO05D000484 1.1e-15 87.0 95 53.7
GSVIVG01035409001 Vitis vinifera HOM05D000239 ORTHO05D000484 1.8e-15 86.3 101 52.5
TAR636G0465 Trochodendron aralioides HOM05D000239 ORTHO05D016857 3.1e-15 85.5 108 48.1
Migut.E01565 Erythranthe guttata HOM05D000239 ORTHO05D000484 6.9e-15 84.3 75 60.0
SGA_v2.0_scaffold163G38032 Striga asiatica HOM05D000239 ORTHO05D000484 6.9e-15 84.3 73 60.3
Cfa017952 Carpinus fangiana HOM05D000239 ORTHO05D000484 1.5e-14 83.2 69 62.3
Manes.16G080200 Manihot esculenta HOM05D000239 ORTHO05D000484 1.5e-14 83.2 68 64.7
Prupe.1G412200 Prunus persica HOM05D000239 ORTHO05D000484 3.4e-14 82.0 71 57.7
Sed0014622 Sechium edule HOM05D000239 ORTHO05D000484 3.4e-14 82.0 109 49.5
QL02p001239 Quercus lobata HOM05D000239 ORTHO05D000484 7.7e-14 80.9 70 64.3
Sed0022080 Sechium edule HOM05D000239 ORTHO05D000484 1.0e-13 80.5 63 65.1
CDE06G0763 Ceratophyllum demersum HOM05D000239 ORTHO05D000484 1.7e-13 79.7 71 59.2
Lsat_1_v5_gn_3_24421 Lactuca sativa HOM05D000239 ORTHO05D000484 1.7e-13 79.7 79 58.2
TWI32G0009 Tripterygium wilfordii HOM05D000239 ORTHO05D000484 1.7e-13 79.7 111 45.9
CiPaw.16G028800 Carya illinoinensis HOM05D000239 ORTHO05D000484 2.2e-13 79.3 97 51.5
HanXRQChr06g0173851 Helianthus annuus HOM05D000239 ORTHO05D000484 2.2e-13 79.3 99 49.5
MELO3C016868.2 Cucumis melo HOM05D000239 ORTHO05D000484 2.9e-13 79.0 63 63.5
CsaV3_4G035610 Cucumis sativus L. HOM05D000239 ORTHO05D000484 2.9e-13 79.0 81 54.3
Oeu008356.2 Olea europaea HOM05D000239 ORTHO05D016857 2.9e-13 79.0 103 48.5
TWI34G0580 Tripterygium wilfordii HOM05D000239 ORTHO05D000484 3.8e-13 78.6 100 47.0
AT5G11850 Arabidopsis thaliana HOM05D000239 ORTHO05D000484 5.0e-13 78.2 98 49.0
MSTRG.14053 Avicennia marina HOM05D000239 ORTHO05D000484 5.0e-13 78.2 93 49.5
THA.LOC104799167 Tarenaya hassleriana HOM05D000239 ORTHO05D000484 6.5e-13 77.8 65 61.5
CAN.G42.1 Capsicum annuum HOM05D000239 ORTHO05D000484 8.5e-13 77.4 100 49.0
BcaC03g13396 Brassica carinata HOM05D000239 ORTHO05D000484 1.1e-12 77.0 68 57.4
BcaNung02649 Brassica carinata HOM05D000239 ORTHO05D000484 1.1e-12 77.0 68 57.4
A02p01240 Brassica napus HOM05D000239 ORTHO05D000484 1.1e-12 77.0 68 57.4
C02p05420 Brassica napus HOM05D000239 ORTHO05D000484 1.1e-12 77.0 68 57.4
BolC2t06490H Brassica oleracea HOM05D000239 ORTHO05D000484 1.1e-12 77.0 68 57.4
BraA02t05103Z Brassica rapa HOM05D000239 ORTHO05D000484 1.1e-12 77.0 68 57.4
AL6G22610 Arabidopsis lyrata HOM05D000239 ORTHO05D000484 1.4e-12 76.6 65 60.0
Carub.0006s1038 Capsella rubella HOM05D000239 ORTHO05D000484 1.4e-12 76.6 65 60.0
Thhalv10012636m.g Eutrema salsugineum HOM05D000239 ORTHO05D000484 1.4e-12 76.6 65 60.0
Ciclev10010193m.g Citrus clementina HOM05D000239 ORTHO05D000484 1.9e-12 76.3 92 50.0
Sabra06G0177900 Salix brachista HOM05D000239 ORTHO05D000484 1.9e-12 76.3 111 45.0
Hund03340 Selenicereus undatus HOM05D000239 ORTHO05D000484 3.2e-12 75.5 73 52.1
Aa31LG3G15350 Aethionema arabicum HOM05D000239 ORTHO05D000484 4.2e-12 75.1 65 60.0
THA.LOC104824610 Tarenaya hassleriana HOM05D000239 ORTHO05D000484 5.5e-12 74.7 65 61.5
Atru.chr7.1060 Acer truncatum HOM05D000239 ORTHO05D000484 7.2e-12 74.3 102 46.1
Potri.018G053800 Populus trichocarpa HOM05D000239 ORTHO05D000484 7.2e-12 74.3 100 48.0
Migut.A00137 Erythranthe guttata HOM05D000239 ORTHO05D000484 9.4e-12 73.9 96 49.0
Hund19454 Selenicereus undatus HOM05D000239 ORTHO05D000484 9.4e-12 73.9 85 50.6
C03p06020 Brassica napus HOM05D000239 ORTHO05D000484 1.2e-11 73.6 65 60.0
BolC3t13113H Brassica oleracea HOM05D000239 ORTHO05D000484 1.2e-11 73.6 65 60.0
CARHR201310 Cardamine hirsuta HOM05D000239 ORTHO05D000484 1.2e-11 73.6 65 58.5
Sp6g31750 Schrenkiella parvula HOM05D000239 ORTHO05D000484 1.2e-11 73.6 65 56.9
BcaB01g05450 Brassica carinata HOM05D000239 ORTHO05D000484 1.6e-11 73.2 65 56.9
A03p05220 Brassica napus HOM05D000239 ORTHO05D000484 1.6e-11 73.2 101 48.5
Sabra18G0049100 Salix brachista HOM05D000239 ORTHO05D000484 2.1e-11 72.8 100 47.0
Sc06g0000960 Simmondsia chinensis HOM05D000239 ORTHO05D000484 4.7e-11 71.6 71 53.5
BraA03t09862Z Brassica rapa HOM05D000239 ORTHO05D000484 6.1e-11 71.2 101 45.5
COL.COLO4_21056 Corchorus olitorius HOM05D000239 ORTHO05D000484 7.9e-11 70.9 73 57.5
Potri.006G229400 Populus trichocarpa HOM05D000239 ORTHO05D000484 7.9e-11 70.9 109 44.0
Ah.10g034400 Amaranthus hybridus HOM05D000239 ORTHO05D000484 1.8e-10 69.7 66 56.1
ATR0749G057 Amborella trichopoda HOM05D000239 ORTHO05D000484 3.0e-10 68.9 100 46.0
EL10Ac2g03887 Beta vulgaris HOM05D000239 ORTHO05D000484 3.9e-10 68.6 64 56.2
Duzib187G1474 Durio zibethinus HOM05D000239 ORTHO05D000484 3.9e-10 68.6 73 57.5
arahy.Tifrunner.gnm1.ann1.0F1RE7 Arachis hypogaea HOM05D000239 ORTHO05D000484 8.8e-10 67.4 80 51.2
Duzib168G2297 Durio zibethinus HOM05D000239 ORTHO05D000484 1.5e-09 66.6 67 56.7
Thecc.09G053600 Theobroma cacao HOM05D000239 ORTHO05D000484 2.6e-09 65.9 73 56.2
Gohir.A07G022104 Gossypium hirsutum HOM05D000239 ORTHO05D000484 5.7e-09 64.7 64 57.8
Gohir.D07G022100 Gossypium hirsutum HOM05D000239 ORTHO05D000484 7.4e-09 64.3 64 57.8
Gorai.001G022800 Gossypium raimondii HOM05D000239 ORTHO05D000484 7.4e-09 64.3 64 57.8
HPP92_021755 Vanilla planifolia HOM05D000239 ORTHO05D016857 9.7e-09 63.9 72 48.6
Gohir.D06G087700 Gossypium hirsutum HOM05D000239 ORTHO05D000484 1.3e-08 63.5 97 47.4
Gorai.009G045200 Gossypium raimondii HOM05D000239 ORTHO05D000484 1.7e-08 63.2 96 42.7
PSO210G6305 Papaver somniferum HOM05D000239 ORTHO05D000484 1.7e-08 63.2 83 43.4
Gorai.010G101300 Gossypium raimondii HOM05D000239 ORTHO05D000484 2.2e-08 62.8 97 47.4
Gohir.D05G044100 Gossypium hirsutum HOM05D000239 ORTHO05D000484 2.8e-08 62.4 96 42.7
Phvul.001G035100 Phaseolus vulgaris HOM05D000239 ORTHO05D000484 2.8e-08 62.4 67 55.2
Gohir.A05G042400 Gossypium hirsutum HOM05D000239 ORTHO05D000484 3.7e-08 62.0 64 53.1
TAR624G1150 Trochodendron aralioides HOM05D000239 ORTHO05D000484 3.7e-08 62.0 52 61.5
Glyma.14G094400 Glycine max HOM05D000239 ORTHO05D000484 4.8e-08 61.6 67 55.2
Glyma.17G229100 Glycine max HOM05D000239 ORTHO05D000484 4.8e-08 61.6 67 55.2
AagrBONN_evm.TU.Sc2ySwM_368.1982 Anthoceros agrestis HOM05D000239 ORTHO05D000484 1.1e-07 60.5 68 47.1
AUR62009151 Chenopodium quinoa HOM05D000239 ORTHO05D000484 1.1e-07 60.5 81 45.7
AUR62022076 Chenopodium quinoa HOM05D000239 ORTHO05D000484 1.1e-07 60.5 81 44.4
MD12G1234900 Malus domestica HOM05D000239 ORTHO05D000484 1.1e-07 60.5 98 41.8
Oeu047115.2 Olea europaea HOM05D000239 ORTHO05D000484 1.1e-07 60.5 41 65.9
TPR.G12742 Trifolium pratense HOM05D000239 ORTHO05D000484 1.1e-07 60.5 62 48.4
ClCG04G010710 Citrullus lanatus HOM05D000239 ORTHO05D000484 1.4e-07 60.1 118 37.3
Oeu018643.1 Olea europaea HOM05D000239 ORTHO05D016857 1.4e-07 60.1 39 66.7
VMungo0647G2133 Vigna mungo HOM05D000239 ORTHO05D000484 1.4e-07 60.1 67 53.7
Psat6g020560 Pisum sativum HOM05D000239 ORTHO05D000484 2.4e-07 59.3 63 58.7
Lsat_1_v5_gn_2_19441 Lactuca sativa HOM05D000239 ORTHO05D000484 4.1e-07 58.5 108 40.7
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 7.0e-07 57.8 82 41.5
Gohir.A09G052184 Gossypium hirsutum HOM05D000239 ORTHO05D000484 7.0e-07 57.8 54 53.7
Lsat_1_v5_gn_8_144000 Lactuca sativa HOM05D000239 ORTHO05D000484 7.0e-07 57.8 55 56.4
Nn6g34082 Nelumbo nucifera HOM05D000239 ORTHO05D000484 7.0e-07 57.8 69 49.3
THA.LOC104812164 Tarenaya hassleriana HOM05D000239 ORTHO05D000484 7.0e-07 57.8 54 53.7
Thecc.03G053200 Theobroma cacao HOM05D000239 ORTHO05D000484 7.0e-07 57.8 99 41.4
Aa31LG7G2910 Aethionema arabicum HOM05D000239 ORTHO05D000484 9.1e-07 57.4 108 38.9
BcaC08g46786 Brassica carinata HOM05D000239 ORTHO05D000484 9.1e-07 57.4 69 44.9
C06p47770 Brassica napus HOM05D000239 ORTHO05D000484 9.1e-07 57.4 69 44.9
BolC6t39816H Brassica oleracea HOM05D000239 ORTHO05D000484 9.1e-07 57.4 69 44.9
MELO3C002125.2 Cucumis melo HOM05D000239 ORTHO05D000484 9.1e-07 57.4 111 37.8
COL.COLO4_16138 Corchorus olitorius HOM05D000239 ORTHO05D000484 1.2e-06 57.0 65 47.7
Peaxi162Scf00683g00162 Petunia axillaris HOM05D000239 ORTHO05D000484 1.2e-06 57.0 99 43.4
Sed0027543 Sechium edule HOM05D000239 ORTHO05D000484 1.2e-06 57.0 54 53.7
FAN02G2395 Fragaria x ananassa HOM05D000239 ORTHO05D000484 1.5e-06 56.6 104 36.5
Oeu026289.1 Olea europaea HOM05D000239 ORTHO05D000484 1.5e-06 56.6 110 38.2
SalBow1G6508 Salvia bowleyana HOM05D000239 ORTHO05D000484 1.5e-06 56.6 65 46.2
Aa31LG4G3970 Aethionema arabicum HOM05D000239 ORTHO05D000484 2.0e-06 56.2 65 47.7
CSS0030644 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 2.0e-06 56.2 98 39.8
CAN.G1129.16 Capsicum annuum HOM05D000239 ORTHO05D000484 2.0e-06 56.2 99 43.4
DCAR_014731 Daucus carota HOM05D000239 ORTHO05D000484 2.0e-06 56.2 63 49.2
Duzib068G0966 Durio zibethinus HOM05D000239 ORTHO05D000484 2.0e-06 56.2 54 53.7
Gohir.A06G089200 Gossypium hirsutum HOM05D000239 ORTHO05D000484 2.0e-06 56.2 73 53.4
Gorai.006G056600 Gossypium raimondii HOM05D000239 ORTHO05D000484 2.0e-06 56.2 54 51.9
Potri.015G040100 Populus trichocarpa HOM05D000239 ORTHO05D000484 2.0e-06 56.2 76 46.1
HPP92_023504 Vanilla planifolia HOM05D000239 ORTHO05D000484 2.0e-06 56.2 76 46.1
GSVIVG01008413001 Vitis vinifera HOM05D000239 ORTHO05D000484 2.0e-06 56.2 114 36.0
Aa31LG2G18690 Aethionema arabicum HOM05D000239 ORTHO05D000484 2.6e-06 55.8 105 36.2
Cpa.g.sc3.414 Carica papaya HOM05D000239 ORTHO05D000484 2.6e-06 55.8 77 42.9
CsaV3_1G007070 Cucumis sativus L. HOM05D000239 ORTHO05D000484 2.6e-06 55.8 111 36.9
DCAR_031740 Daucus carota HOM05D000239 ORTHO05D000484 2.6e-06 55.8 63 47.6
Manes.14G170100 Manihot esculenta HOM05D000239 ORTHO05D000484 2.6e-06 55.8 54 51.9
SGA_v2.0_scaffold171G38917 Striga asiatica HOM05D000239 ORTHO05D000484 2.6e-06 55.8 62 46.8
THA.LOC104813924 Tarenaya hassleriana HOM05D000239 ORTHO05D000484 2.6e-06 55.8 69 43.5
CARHR066730 Cardamine hirsuta HOM05D000239 ORTHO05D000484 3.4e-06 55.5 54 50.0
MELO3C015389.2 Cucumis melo HOM05D000239 ORTHO05D000484 3.4e-06 55.5 112 39.3
Dinv18256 Davidia involucrata HOM05D000239 ORTHO05D000484 3.4e-06 55.5 54 53.7
Duzib084G0861 Durio zibethinus HOM05D000239 ORTHO05D000484 3.4e-06 55.5 91 41.8
Lj9C421T5 Lonicera japonica HOM05D000239 ORTHO05D000484 3.4e-06 55.5 55 50.9
MD04G1217700 Malus domestica HOM05D000239 ORTHO05D000484 3.4e-06 55.5 104 36.5
MD15G1060300 Malus domestica HOM05D000239 ORTHO05D000484 3.4e-06 55.5 45 60.0
Nitab4.5_0004028g0050 Nicotiana tabacum HOM05D000239 ORTHO05D000484 3.4e-06 55.5 75 42.7
Sabra15G0057100 Salix brachista HOM05D000239 ORTHO05D000484 3.4e-06 55.5 54 51.9
A07p39530 Brassica napus HOM05D000239 ORTHO05D000484 4.5e-06 55.1 100 37.0
BraA07t31502Z Brassica rapa HOM05D000239 ORTHO05D000484 4.5e-06 55.1 100 37.0
CSS0005975 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 4.5e-06 55.1 113 38.1
CSS0009740 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 4.5e-06 55.1 113 38.1
Lj5A156T85 Lonicera japonica HOM05D000239 ORTHO05D000484 4.5e-06 55.1 113 37.2
Lj5C155T8 Lonicera japonica HOM05D000239 ORTHO05D000484 4.5e-06 55.1 113 37.2
MD08G1061200 Malus domestica HOM05D000239 ORTHO05D000484 4.5e-06 55.1 45 60.0
PSO478G5173 Papaver somniferum HOM05D000239 ORTHO05D000484 4.5e-06 55.1 74 44.6
Sed0002699 Sechium edule HOM05D000239 ORTHO05D000484 4.5e-06 55.1 101 36.6
Aqoxy3G00109 Aquilegia oxysepala HOM05D000239 ORTHO05D000484 5.9e-06 54.7 54 50.0
Carub.0002s2041 Capsella rubella HOM05D000239 ORTHO05D000484 5.9e-06 54.7 108 38.9
Ca_17204_v3 Cicer arietinum L. HOM05D000239 ORTHO05D000484 5.9e-06 54.7 69 43.5
Haze_04311 Corylus avellana HOM05D000239 ORTHO05D000484 5.9e-06 54.7 72 43.1
CsaV3_1G039660 Cucumis sativus L. HOM05D000239 ORTHO05D000484 5.9e-06 54.7 102 38.2
Eucgr.B00874 Eucalyptus grandis HOM05D000239 ORTHO05D000484 5.9e-06 54.7 54 50.0
Thhalv10018059m.g Eutrema salsugineum HOM05D000239 ORTHO05D000484 5.9e-06 54.7 102 38.2
Glyma.10G159200 Glycine max HOM05D000239 ORTHO05D000484 5.9e-06 54.7 69 49.3
Gohir.D12G269000 Gossypium hirsutum HOM05D000239 ORTHO05D000484 5.9e-06 54.7 71 43.7
Gorai.008G289300 Gossypium raimondii HOM05D000239 ORTHO05D000484 5.9e-06 54.7 70 44.3
PSO017G2061 Papaver somniferum HOM05D000239 ORTHO05D000484 5.9e-06 54.7 74 43.2
Prupe.5G231800 Prunus persica HOM05D000239 ORTHO05D000484 5.9e-06 54.7 72 44.4
CARHR008640 Cardamine hirsuta HOM05D000239 ORTHO05D000484 7.7e-06 54.3 72 47.2
Cfa019679 Carpinus fangiana HOM05D000239 ORTHO05D000484 7.7e-06 54.3 112 40.2
Migut.D01561 Erythranthe guttata HOM05D000239 ORTHO05D000484 7.7e-06 54.3 54 51.9
FvH4_5g17200 Fragaria vesca HOM05D000239 ORTHO05D000484 7.7e-06 54.3 72 44.4
FAN04G2649 Fragaria x ananassa HOM05D000239 ORTHO05D000484 7.7e-06 54.3 72 44.4
FAN18G2938 Fragaria x ananassa HOM05D000239 ORTHO05D000484 7.7e-06 54.3 72 44.4
Glyma.20G229500 Glycine max HOM05D000239 ORTHO05D000484 7.7e-06 54.3 69 49.3
HanXRQChr03g0079091 Helianthus annuus HOM05D000239 ORTHO05D000484 7.7e-06 54.3 33 75.8
MD14G1235100 Malus domestica HOM05D000239 ORTHO05D000484 7.7e-06 54.3 83 39.8
Nitab4.5_0001986g0060 Nicotiana tabacum HOM05D000239 ORTHO05D000484 7.7e-06 54.3 100 40.0
Os02g0220700 Oryza sativa ssp. japonica HOM05D000239 ORTHO05D000484 7.7e-06 54.3 77 44.2
RcHm_v2.0_Chr7g0178591 Rosa chinensis HOM05D000239 ORTHO05D000484 7.7e-06 54.3 72 44.4


User provided reference genes

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