Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005814g0050 Nicotiana tabacum HOM05D003675 ORTHO05D004318 8.9e-51 203.4 107 100.0
Nitab4.5_0000100g0150 Nicotiana tabacum HOM05D003675 ORTHO05D004318 4.2e-32 141.4 108 75.0
Nitab4.5_0006732g0010 Nicotiana tabacum HOM05D003675 ORTHO05D004318 4.2e-32 141.4 108 75.0
Peaxi162Scf00155g01015 Petunia axillaris HOM05D003675 ORTHO05D004318 2.1e-31 139.0 108 74.1
CAN.G1058.33 Capsicum annuum HOM05D003675 ORTHO05D004318 8.7e-30 133.7 108 71.3
Oeu015186.1 Olea europaea HOM05D003675 ORTHO05D004318 8.7e-30 133.7 108 68.5
Cc09_g08810 Coffea canephora HOM05D003675 ORTHO05D004318 2.5e-29 132.1 108 69.4
Actinidia07469 Actinidia chinensis HOM05D003675 ORTHO05D004318 5.6e-29 131.0 105 69.5
Nitab4.5_0000869g0160 Nicotiana tabacum HOM05D003675 ORTHO05D004318 9.6e-29 130.2 108 66.7
Nitab4.5_0007290g0030 Nicotiana tabacum HOM05D003675 ORTHO05D004318 9.6e-29 130.2 108 66.7
Solyc02g070290.3 Solanum lycopersicum HOM05D003675 ORTHO05D004318 9.6e-29 130.2 108 66.7
Sopen02g019380 Solanum pennellii HOM05D003675 ORTHO05D004318 9.6e-29 130.2 108 66.7
PGSC0003DMG400021101 Solanum tuberosum HOM05D003675 ORTHO05D004318 9.6e-29 130.2 108 66.7
CAN.G660.39 Capsicum annuum HOM05D003675 ORTHO05D004318 1.6e-28 129.4 108 66.7
Dinv32189 Davidia involucrata HOM05D003675 ORTHO05D004318 1.6e-28 129.4 105 68.6
DCAR_003868 Daucus carota HOM05D003675 ORTHO05D004318 2.1e-28 129.0 105 65.7
Sed0018861 Sechium edule HOM05D003675 ORTHO05D004318 2.1e-28 129.0 105 68.6
ClCG03G006310 Citrullus lanatus HOM05D003675 ORTHO05D004318 2.8e-28 128.6 105 67.6
Ciclev10014154m.g Citrus clementina HOM05D003675 ORTHO05D004318 6.2e-28 127.5 105 68.6
ECA233G3702 Erigeron canadensis HOM05D003675 ORTHO05D004318 6.2e-28 127.5 105 67.6
HanXRQChr08g0209981 Helianthus annuus HOM05D003675 ORTHO05D004318 8.1e-28 127.1 105 66.7
Lsat_1_v5_gn_8_147381 Lactuca sativa HOM05D003675 ORTHO05D004318 1.1e-27 126.7 105 65.7
Manes.06G060500 Manihot esculenta HOM05D003675 ORTHO05D004318 1.4e-27 126.3 105 68.6
Dinv15908 Davidia involucrata HOM05D003675 ORTHO05D004318 1.8e-27 125.9 105 67.6
Lalb_Chr08g0233231 Lupinus albus HOM05D003675 ORTHO05D004318 1.8e-27 125.9 105 67.6
Solyc02g021620.3 Solanum lycopersicum HOM05D003675 ORTHO05D004318 1.8e-27 125.9 108 69.4
Sopen02g006170 Solanum pennellii HOM05D003675 ORTHO05D004318 1.8e-27 125.9 108 69.4
BcaB03g13830 Brassica carinata HOM05D003675 ORTHO05D004318 2.4e-27 125.6 108 64.8
A07p09940 Brassica napus HOM05D003675 ORTHO05D004318 2.4e-27 125.6 108 64.8
C07p15140 Brassica napus HOM05D003675 ORTHO05D004318 2.4e-27 125.6 108 64.8
BolC7t42018H Brassica oleracea HOM05D003675 ORTHO05D004318 2.4e-27 125.6 108 64.8
BraA07t28783Z Brassica rapa HOM05D003675 ORTHO05D004318 2.4e-27 125.6 108 64.8
Glyma.15G193400 Glycine max HOM05D003675 ORTHO05D004318 2.4e-27 125.6 105 67.6
Phvul.009G216800 Phaseolus vulgaris HOM05D003675 ORTHO05D004318 2.4e-27 125.6 105 66.7
Potri.001G357600 Populus trichocarpa HOM05D003675 ORTHO05D004318 3.1e-27 125.2 105 67.6
CSS0048327 Camellia sinensis var. sinensis HOM05D003675 ORTHO05D004318 4.0e-27 124.8 105 68.6
HanXRQChr12g0385671 Helianthus annuus HOM05D003675 ORTHO05D004318 4.0e-27 124.8 105 67.6
Lj6g0000180 Lotus japonicus HOM05D003675 ORTHO05D004318 4.0e-27 124.8 105 66.7
Ca_02515_v3 Cicer arietinum L. HOM05D003675 ORTHO05D004318 5.3e-27 124.4 105 66.7
Aa31LG6G11710 Aethionema arabicum HOM05D003675 ORTHO05D004318 6.9e-27 124.0 108 65.7
Glyma.09G085300 Glycine max HOM05D003675 ORTHO05D004318 6.9e-27 124.0 105 65.7
TAR626G1758 Trochodendron aralioides HOM05D003675 ORTHO05D004318 6.9e-27 124.0 105 67.6
BcaNung05260 Brassica carinata HOM05D003675 ORTHO05D004318 9.0e-27 123.6 108 64.8
Medtr2g048510 Medicago truncatula HOM05D003675 ORTHO05D004318 9.0e-27 123.6 105 66.7
BcaC01g00192 Brassica carinata HOM05D003675 ORTHO05D004318 1.2e-26 123.2 108 63.9
A08p24460 Brassica napus HOM05D003675 ORTHO05D004318 1.2e-26 123.2 108 63.9
C03p76760 Brassica napus HOM05D003675 ORTHO05D004318 1.2e-26 123.2 108 63.9
BolC3t19930H Brassica oleracea HOM05D003675 ORTHO05D004318 1.2e-26 123.2 108 63.9
BraA08t34402Z Brassica rapa HOM05D003675 ORTHO05D004318 1.2e-26 123.2 108 63.9
TWI53G0160 Tripterygium wilfordii HOM05D003675 ORTHO05D004318 1.2e-26 123.2 105 66.7
Atru.chr10.917 Acer truncatum HOM05D003675 ORTHO05D004318 2.0e-26 122.5 105 67.6
Atru.chr10.925 Acer truncatum HOM05D003675 ORTHO05D004318 2.0e-26 122.5 105 67.6
CANSAT35G1002 Cannabis sativa HOM05D003675 ORTHO05D004318 2.0e-26 122.5 105 64.8
CsaV3_1G037400 Cucumis sativus L. HOM05D003675 ORTHO05D004318 2.0e-26 122.5 105 66.7
Rhsim13G0119800 Rhododendron simsii HOM05D003675 ORTHO05D004318 2.0e-26 122.5 105 64.8
Sp1g26270 Schrenkiella parvula HOM05D003675 ORTHO05D004318 2.0e-26 122.5 108 63.9
Thhalv10006695m.g Eutrema salsugineum HOM05D003675 ORTHO05D004318 2.6e-26 122.1 108 63.0
Manes.14G134400 Manihot esculenta HOM05D003675 ORTHO05D004318 2.6e-26 122.1 105 67.6
TWI73G0281 Tripterygium wilfordii HOM05D003675 ORTHO05D004318 2.6e-26 122.1 105 65.7
VMungo1309G0958 Vigna mungo HOM05D003675 ORTHO05D004318 2.6e-26 122.1 105 65.7
CARHR029820 Cardamine hirsuta HOM05D003675 ORTHO05D004318 4.5e-26 121.3 108 63.0
Migut.H01338 Erythranthe guttata HOM05D003675 ORTHO05D004318 4.5e-26 121.3 110 63.6
Sabra11G0086100 Salix brachista HOM05D003675 ORTHO05D004318 4.5e-26 121.3 105 63.8
SGA_v2.0_scaffold106G30664 Striga asiatica HOM05D003675 ORTHO05D004318 4.5e-26 121.3 109 64.2
SGA_v2.0_scaffold51G18648 Striga asiatica HOM05D003675 ORTHO05D004318 4.5e-26 121.3 110 63.6
AL1G44390 Arabidopsis lyrata HOM05D003675 ORTHO05D004318 5.8e-26 120.9 108 62.0
AT1G30450 Arabidopsis thaliana HOM05D003675 ORTHO05D004318 5.8e-26 120.9 108 62.0
TAR627G0374 Trochodendron aralioides HOM05D003675 ORTHO05D004318 5.8e-26 120.9 105 64.8
Eucgr.D00196 Eucalyptus grandis HOM05D003675 ORTHO05D004318 7.6e-26 120.6 105 63.8
Sabra16G0235300 Salix brachista HOM05D003675 ORTHO05D004318 9.9e-26 120.2 89 71.9
PGR083G0730 Punica granatum HOM05D003675 ORTHO05D004318 1.3e-25 119.8 105 66.7
Potri.011G090900 Populus trichocarpa HOM05D003675 ORTHO05D004318 2.2e-25 119.0 105 62.9
Cpa.g.sc17.78 Carica papaya HOM05D003675 ORTHO05D004318 2.9e-25 118.6 105 67.6
Lalb_Chr11g0073421 Lupinus albus HOM05D003675 ORTHO05D004318 4.9e-25 117.9 105 64.8
GSVIVG01021607001 Vitis vinifera HOM05D003675 ORTHO05D004318 8.4e-25 117.1 105 63.8
Sed0017115 Sechium edule HOM05D003675 ORTHO05D004318 1.1e-24 116.7 105 63.8
EL10Ac8g20233 Beta vulgaris HOM05D003675 ORTHO05D004318 1.4e-24 116.3 105 64.8
SHI20674 Sapria himalayana HOM05D000105 ORTHO05D000023 1.9e-24 115.9 89 68.5
Aa31LG10G6660 Aethionema arabicum HOM05D003675 ORTHO05D004318 2.4e-24 115.5 108 63.0
Ah.12g053620 Amaranthus hybridus HOM05D003675 ORTHO05D004318 2.4e-24 115.5 105 64.8
AUR62014439 Chenopodium quinoa HOM05D003675 ORTHO05D004318 2.4e-24 115.5 105 63.8
CiPaw.10G086400 Carya illinoinensis HOM05D003675 ORTHO05D004318 4.2e-24 114.8 105 64.8
arahy.Tifrunner.gnm1.ann1.71J8LW Arachis hypogaea HOM05D003675 ORTHO05D004318 5.4e-24 114.4 105 64.8
arahy.Tifrunner.gnm1.ann1.F8HCHG Arachis hypogaea HOM05D003675 ORTHO05D004318 5.4e-24 114.4 105 64.8
Cfa000847 Carpinus fangiana HOM05D003675 ORTHO05D004318 7.1e-24 114.0 105 65.7
Haze_05761 Corylus avellana HOM05D003675 ORTHO05D004318 7.1e-24 114.0 105 65.7
Gohir.A12G045566 Gossypium hirsutum HOM05D003675 ORTHO05D004318 9.3e-24 113.6 105 64.8
Gohir.D12G044700 Gossypium hirsutum HOM05D003675 ORTHO05D004318 9.3e-24 113.6 105 64.8
Gorai.008G047100 Gossypium raimondii HOM05D003675 ORTHO05D004318 9.3e-24 113.6 105 64.8
Nn8g39842 Nelumbo nucifera HOM05D003675 ORTHO05D004318 9.3e-24 113.6 105 64.8
Thecc.02G011900 Theobroma cacao HOM05D003675 ORTHO05D004318 9.3e-24 113.6 105 64.8
CiPaw.09G116500 Carya illinoinensis HOM05D003675 ORTHO05D004318 1.2e-23 113.2 105 63.8
PSO675G2215 Papaver somniferum HOM05D003675 ORTHO05D004318 1.6e-23 112.8 106 64.2
AUR62015052 Chenopodium quinoa HOM05D003675 ORTHO05D004318 2.1e-23 112.5 105 62.9
COL.COLO4_17678 Corchorus olitorius HOM05D003675 ORTHO05D004318 2.1e-23 112.5 105 64.8
Duzib248G0664 Durio zibethinus HOM05D003675 ORTHO05D004318 2.1e-23 112.5 108 63.9
ATR1098G088 Amborella trichopoda HOM05D003675 ORTHO05D004318 2.7e-23 112.1 109 61.5
Lsat_1_v5_gn_4_241 Lactuca sativa HOM05D003675 ORTHO05D004318 2.7e-23 112.1 113 57.5
PSO675G7364 Papaver somniferum HOM05D003675 ORTHO05D004318 2.7e-23 112.1 106 63.2
Psat1g019680 Pisum sativum HOM05D003675 ORTHO05D004318 3.5e-23 111.7 105 61.9
MD05G1275000 Malus domestica HOM05D003675 ORTHO05D004318 6.0e-23 110.9 105 64.8
Duzib132G0867 Durio zibethinus HOM05D003675 ORTHO05D004318 7.9e-23 110.5 105 62.9
DCAR_027870 Daucus carota HOM05D003675 ORTHO05D004318 1.0e-22 110.2 105 59.0
CDE04G3079 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 1.3e-22 109.8 108 57.4
Prupe.4G088900 Prunus persica HOM05D003675 ORTHO05D004318 1.3e-22 109.8 105 64.8
QL05p053600 Quercus lobata HOM05D003675 ORTHO05D004318 1.3e-22 109.8 105 61.9
MBI18_g11285_MAGBIO Magnolia biondii HOM05D003675 ORTHO05D004318 1.8e-22 109.4 106 61.3
Aqoxy3G00253 Aquilegia oxysepala HOM05D003675 ORTHO05D004318 2.3e-22 109.0 106 62.3
vmacro03400 Vaccinium macrocarpon HOM05D003675 ORTHO05D004318 2.3e-22 109.0 106 63.2
Zm00001eb197200 Zea mays HOM05D003675 ORTHO05D004318 2.3e-22 109.0 112 56.2
CDE07G0817 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 3.9e-22 108.2 109 56.9
MD10G1254500 Malus domestica HOM05D003675 ORTHO05D004318 3.9e-22 108.2 105 64.8
Os01g0304100 Oryza sativa ssp. japonica HOM05D003675 ORTHO05D004318 5.6e-21 104.4 115 58.3
SalBow7G0158 Salvia bowleyana HOM05D003675 ORTHO05D004318 5.6e-21 104.4 133 50.4
Os08g0323700 Oryza sativa ssp. japonica HOM05D003675 ORTHO05D004318 1.3e-20 103.2 112 56.2
MELO3C002803.2 Cucumis melo HOM05D003675 ORTHO05D004318 2.1e-20 102.4 108 57.4
Gohir.D02G238100 Gossypium hirsutum HOM05D003675 ORTHO05D004318 2.1e-20 102.4 105 58.1
Gorai.005G266600 Gossypium raimondii HOM05D003675 ORTHO05D004318 2.1e-20 102.4 105 58.1
Gohir.A03G216500 Gossypium hirsutum HOM05D003675 ORTHO05D004318 2.8e-20 102.1 105 58.1
Nn2g15671 Nelumbo nucifera HOM05D003675 ORTHO05D004318 2.8e-20 102.1 105 60.0
Hund06713 Selenicereus undatus HOM05D003675 ORTHO05D004318 3.7e-20 101.7 105 57.1
HPP92_017213 Vanilla planifolia HOM05D003675 ORTHO05D004318 3.7e-20 101.7 114 54.4
Zm00001eb286030 Zea mays HOM05D003675 ORTHO05D004318 6.2e-20 100.9 112 54.5
Zm00001eb347460 Zea mays HOM05D003675 ORTHO05D004318 6.2e-20 100.9 112 54.5
Mapoly0050s0083 Marchantia polymorpha HOM05D003675 ORTHO05D004318 8.1e-20 100.5 111 52.3
Pp3c13_9730 Physcomitrium patens HOM05D003675 ORTHO05D004318 8.1e-20 100.5 109 52.3
Pp3c13_9737 Physcomitrium patens HOM05D003675 ORTHO05D004318 8.1e-20 100.5 109 52.3
Pp3c2_27310 Physcomitrium patens HOM05D003675 ORTHO05D004318 3.1e-19 98.6 109 52.3
Pp3c6_17940 Physcomitrium patens HOM05D003675 ORTHO05D004318 4.0e-19 98.2 112 48.2
SMO141G0147 Selaginella moellendorffii HOM05D003675 ORTHO05D004318 1.5e-18 96.3 108 52.8
AagrBONN_evm.TU.Sc2ySwM_344.2138 Anthoceros agrestis HOM05D003675 ORTHO05D004318 2.0e-18 95.9 110 50.0
FvH4_3g09910 Fragaria vesca HOM05D003675 ORTHO05D004318 2.6e-18 95.5 105 58.1
FAN11G0336 Fragaria x ananassa HOM05D003675 ORTHO05D004318 2.6e-18 95.5 105 58.1
FAN16G2870 Fragaria x ananassa HOM05D003675 ORTHO05D004318 2.6e-18 95.5 105 58.1
FAN21G3951 Fragaria x ananassa HOM05D003675 ORTHO05D004318 2.6e-18 95.5 105 58.1
RcHm_v2.0_Chr5g0015611 Rosa chinensis HOM05D003675 ORTHO05D004318 4.5e-18 94.7 105 55.2
Pp3c1_10530 Physcomitrium patens HOM05D003675 ORTHO05D004318 5.8e-18 94.4 109 51.4
Carub.0001s2862 Capsella rubella HOM05D003675 ORTHO05D004318 7.6e-18 94.0 108 54.6
CBR_g27773 Chara braunii HOM05D003675 ORTHO05D004318 2.7e-15 85.5 113 46.9
Lj1C1164G14 Lonicera japonica HOM05D003675 ORTHO05D004318 6.0e-15 84.3 115 51.3
vmacro23352 Vaccinium macrocarpon HOM05D003675 ORTHO05D004318 5.6e-13 77.8 63 68.3
PSO339G2334 Papaver somniferum HOM05D003675 ORTHO05D004318 9.6e-13 77.0 66 68.2
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 2.1e-12 75.9 59 64.4
unitig_37.g12081 Utricularia gibba HOM05D003675 ORTHO05D004318 3.1e-11 72.0 118 44.9
Lj2A328G58 Lonicera japonica HOM05D003675 ORTHO05D004318 5.3e-11 71.2 52 73.1
HPP92_010716 Vanilla planifolia HOM05D003675 ORTHO05D004318 1.8e-06 56.2 68 48.5
TPR.G999 Trifolium pratense HOM05D003675 ORTHO05D004318 5.1e-06 54.7 35 71.4


User provided reference genes

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