Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 5.2e-193 677.6 345 100.0
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 9.0e-137 490.7 347 72.6
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 1.2e-136 490.3 347 72.6
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 2.9e-135 485.7 347 71.8
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 5.7e-123 444.9 345 67.0
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 9.7e-123 444.1 344 67.2
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 8.2e-122 441.0 344 66.3
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 1.1e-121 440.7 345 65.2
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 3.1e-121 439.1 344 66.6
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 5.1e-116 421.8 340 63.2
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 6.7e-116 421.4 320 62.5
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 8.8e-116 421.0 343 63.6
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 1.5e-115 420.2 344 63.1
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 1.4e-110 403.7 343 58.9
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 8.8e-108 394.4 322 65.2
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 5.7e-107 391.7 334 61.1
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 7.0e-105 384.8 343 58.6
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 7.0e-105 384.8 345 56.5
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.2e-104 384.0 340 60.0
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 3.5e-104 382.5 341 57.8
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 1.3e-103 380.6 340 57.4
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 1.7e-103 380.2 348 57.5
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 2.9e-103 379.4 316 60.1
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 2.9e-103 379.4 342 56.4
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 3.8e-103 379.0 348 57.2
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 3.8e-103 379.0 345 56.8
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 5.0e-103 378.6 342 55.8
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 1.1e-102 377.5 336 58.6
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 1.5e-102 377.1 342 57.6
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 1.9e-102 376.7 334 60.2
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 3.2e-102 375.9 316 59.8
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 3.2e-102 375.9 341 57.5
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 5.5e-102 375.2 343 57.1
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 7.2e-102 374.8 350 56.0
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 1.2e-101 374.0 346 56.1
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 1.2e-101 374.0 343 55.4
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.1e-101 373.2 349 55.6
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 4.7e-101 372.1 342 55.8
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 1.4e-100 370.5 315 59.4
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 1.4e-100 370.5 341 56.9
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 2.3e-100 369.8 342 55.3
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 3.0e-100 369.4 343 56.0
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 3.0e-100 369.4 337 55.5
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 4.0e-100 369.0 342 55.6
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 6.7e-100 368.2 354 55.6
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 1.2e-99 367.5 350 54.6
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 2.6e-99 366.3 322 58.7
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 4.4e-99 365.5 342 56.4
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 5.7e-99 365.2 352 52.3
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 9.7e-99 364.4 345 55.1
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 9.7e-99 364.4 340 55.0
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 9.7e-99 364.4 342 55.8
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.3e-98 364.0 336 56.0
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.3e-98 364.0 193 94.3
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 1.7e-98 363.6 336 59.2
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 2.8e-98 362.8 339 57.2
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 3.7e-98 362.5 344 54.4
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 3.7e-98 362.5 343 54.2
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 3.7e-98 362.5 344 54.4
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 3.7e-98 362.5 344 54.4
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 3.7e-98 362.5 318 56.9
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 4.8e-98 362.1 350 54.0
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 4.8e-98 362.1 350 54.0
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 6.3e-98 361.7 356 53.9
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 6.3e-98 361.7 335 58.8
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 1.1e-97 360.9 333 56.8
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 1.8e-97 360.1 351 54.1
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 1.8e-97 360.1 350 53.4
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 2.4e-97 359.8 306 62.7
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 2.4e-97 359.8 349 54.2
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 3.1e-97 359.4 342 54.7
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 3.1e-97 359.4 344 55.2
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 4.1e-97 359.0 354 54.2
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 4.1e-97 359.0 354 54.2
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 5.3e-97 358.6 346 53.8
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 5.3e-97 358.6 339 55.8
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 9.1e-97 357.8 335 55.5
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 1.6e-96 357.1 344 52.3
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 3.5e-96 355.9 350 53.4
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 4.5e-96 355.5 329 53.8
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 5.9e-96 355.1 350 53.4
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 5.9e-96 355.1 350 53.4
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 7.7e-96 354.8 339 54.0
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 1.0e-95 354.4 338 55.6
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 1.0e-95 354.4 343 54.5
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 1.3e-95 354.0 343 53.9
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 1.7e-95 353.6 342 53.2
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 6.5e-95 351.7 340 54.1
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 5.5e-94 348.6 335 53.1
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 5.5e-94 348.6 341 53.7
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 7.2e-94 348.2 317 56.2
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 1.6e-93 347.1 339 51.0
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 1.6e-93 347.1 344 56.7
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 8.0e-93 344.7 343 53.9
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 1.0e-92 344.4 334 53.6
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 1.8e-92 343.6 343 53.4
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.3e-92 343.2 342 51.5
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 2.3e-92 343.2 342 51.5
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 5.2e-92 342.0 330 50.9
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 4.4e-91 339.0 328 54.9
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 4.4e-91 339.0 342 51.5
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 4.4e-91 339.0 347 51.6
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 1.7e-90 337.0 345 50.7
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 1.1e-89 334.3 271 59.4
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 1.8e-89 333.6 324 53.4
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 2.4e-89 333.2 319 54.5
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 2.0e-88 330.1 345 51.6
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 3.5e-88 329.3 340 51.2
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 1.0e-87 327.8 341 51.0
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 1.5e-86 323.9 344 48.8
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 5.5e-86 322.0 340 51.2
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 3.6e-85 319.3 342 49.7
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 6.1e-85 318.5 338 52.1
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 4.0e-84 315.8 336 50.3
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 8.8e-84 314.7 340 50.9
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 6.3e-82 308.5 345 50.1
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 1.1e-81 307.8 332 50.0
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 3.1e-81 306.2 321 48.9
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 9.2e-81 304.7 285 57.9
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 1.2e-80 304.3 331 48.9
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.0e-79 301.2 349 48.7
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 1.3e-79 300.8 344 48.0
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 1.7e-79 300.4 314 49.7
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 1.5e-78 297.4 350 45.7
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 2.1e-77 293.5 279 54.8
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 8.9e-76 288.1 324 44.4
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 8.3e-74 281.6 193 69.9
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 5.4e-73 278.9 191 73.8
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 1.2e-72 277.7 328 45.7
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 1.2e-72 277.7 340 43.5
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.6e-72 277.3 333 49.2
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 3.5e-72 276.2 191 69.6
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 7.8e-72 275.0 339 42.2
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 2.3e-71 273.5 320 43.4
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 5.0e-71 272.3 332 45.2
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 6.6e-71 271.9 339 40.7
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 8.6e-71 271.6 338 43.8
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.9e-70 270.4 319 43.9
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 2.5e-70 270.0 337 43.0
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.5e-70 270.0 284 51.4
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 4.3e-70 269.2 407 41.0
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 3.6e-69 266.2 322 43.2
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 8.0e-69 265.0 337 42.7
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 1.1e-68 264.6 339 42.2
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 1.1e-68 264.6 339 42.2
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 5.2e-68 262.3 282 50.7
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 6.8e-68 261.9 338 42.6
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 5.8e-67 258.8 236 57.2
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 4.9e-66 255.8 265 49.8
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 1.9e-65 253.8 191 64.9
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 2.7e-64 250.0 179 63.7
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 4.6e-64 249.2 223 56.1
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 5.2e-60 235.7 249 51.8
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 6.4e-58 228.8 191 57.1
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 4.3e-54 216.1 321 38.6
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 9.5e-54 214.9 186 58.1
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 2.6e-51 206.8 184 56.5
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 6.2e-45 185.7 324 36.1
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 1.4e-44 184.5 335 36.1
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 2.6e-43 180.3 169 56.2
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 1.7e-42 177.6 230 46.1
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 3.8e-42 176.4 219 42.5
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 2.1e-32 144.1 174 42.0
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 1.5e-30 137.9 108 63.9
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 1.3e-29 134.8 159 45.9
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 4.5e-27 126.3 94 63.8
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 2.1e-24 117.5 91 57.1
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 1.3e-23 114.8 101 57.4
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 2.3e-23 114.0 165 42.4
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 1.5e-22 111.3 75 72.0
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 6.2e-21 105.9 339 27.4
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 1.3e-18 98.2 77 64.9
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 2.1e-16 90.9 81 48.1
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 3.5e-16 90.1 80 51.2
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 3.9e-15 86.7 59 67.8
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 1.5e-14 84.7 76 50.0
SMO351G0034 Selaginella moellendorffii HOM05D003755 ORTHO05D376906 1.4e-12 78.2 331 27.2
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 2.5e-09 67.4 74 50.0
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 4.6e-08 63.2 51 58.8
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 1.4e-07 61.6 76 48.7


User provided reference genes

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