Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 3.6e-285 984.2 477 100.0
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 6.0e-256 887.1 487 90.1
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 7.6e-235 817.0 456 87.3
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 7.3e-230 800.4 461 85.0
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 4.5e-227 791.2 455 85.3
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 1.9e-225 785.8 455 84.8
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 1.2e-216 756.5 459 82.8
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 1.0e-207 726.9 377 92.3
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 2.6e-187 659.1 457 72.2
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 1.0e-186 657.1 461 70.5
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 1.6e-184 649.8 459 72.1
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 1.3e-181 640.2 456 69.5
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 1.4e-180 636.7 461 69.0
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 1.8e-180 636.3 458 69.4
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 5.3e-180 634.8 467 68.7
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 9.1e-180 634.0 456 69.1
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 1.2e-179 633.6 473 67.7
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 7.7e-179 630.9 448 68.3
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 3.8e-178 628.6 446 68.6
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 1.1e-177 627.1 447 69.4
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 2.5e-177 625.9 452 69.5
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 4.2e-177 625.2 456 68.6
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 5.5e-177 624.8 469 66.5
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 7.2e-177 624.4 459 67.3
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 7.2e-177 624.4 458 68.6
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 1.0e-175 620.5 355 80.8
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 3.0e-175 619.0 453 68.4
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 4.0e-175 618.6 471 66.0
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 5.2e-175 618.2 469 65.9
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 6.8e-175 617.8 440 69.1
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 6.8e-175 617.8 464 68.5
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 2.0e-174 616.3 481 66.3
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 2.0e-174 616.3 407 72.5
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 3.4e-174 615.5 466 67.0
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 4.4e-174 615.1 455 68.4
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 5.7e-174 614.8 378 75.9
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 7.5e-174 614.4 460 67.8
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 9.8e-174 614.0 466 67.0
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 9.8e-174 614.0 385 75.1
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 2.2e-173 612.8 478 65.1
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 2.8e-173 612.5 460 68.3
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 2.8e-173 612.5 360 80.6
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 3.7e-173 612.1 481 64.7
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 4.8e-173 611.7 463 67.6
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 8.3e-173 610.9 392 74.7
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 2.4e-172 609.4 455 67.9
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 5.4e-172 608.2 414 71.7
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 5.4e-172 608.2 392 75.0
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 7.0e-172 607.8 400 73.0
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 9.1e-172 607.4 457 67.4
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 1.6e-171 606.7 392 74.7
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 3.5e-171 605.5 403 73.0
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 4.5e-171 605.1 462 66.7
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 5.9e-171 604.7 401 73.3
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 2.9e-170 602.4 372 74.7
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 2.9e-170 602.4 371 76.5
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 3.8e-170 602.1 377 74.3
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 5.0e-170 601.7 454 66.5
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 5.0e-170 601.7 456 67.1
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 2.5e-169 599.4 439 67.4
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 2.5e-169 599.4 455 67.3
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 4.2e-169 598.6 357 78.2
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 4.2e-169 598.6 403 72.7
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 5.5e-169 598.2 463 65.0
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 9.4e-169 597.4 454 66.3
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 1.2e-168 597.0 393 73.5
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 1.0e-167 594.0 468 65.2
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 5.2e-167 591.7 459 64.9
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 8.8e-167 590.9 452 65.3
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 8.8e-167 590.9 425 66.8
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 1.5e-166 590.1 390 73.1
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 2.6e-166 589.3 388 73.2
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 3.4e-166 589.0 390 73.6
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 5.7e-166 588.2 434 67.5
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 1.3e-165 587.0 463 64.1
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 1.3e-165 587.0 404 70.0
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 3.7e-165 585.5 390 72.6
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 1.1e-164 583.9 377 72.1
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 1.8e-164 583.2 439 65.8
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 2.4e-164 582.8 382 71.5
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 9.2e-164 580.9 420 67.1
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 1.6e-163 580.1 388 71.1
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 2.7e-163 579.3 458 62.7
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 2.7e-163 579.3 472 62.3
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 3.5e-163 578.9 388 70.9
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 3.5e-163 578.9 388 71.1
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 3.5e-163 578.9 388 70.9
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 3.5e-163 578.9 388 70.9
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 3.5e-163 578.9 457 62.8
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 3.5e-163 578.9 455 64.4
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 5.9e-163 578.2 454 62.6
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 5.9e-163 578.2 458 62.7
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 7.7e-163 577.8 447 65.3
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 1.0e-162 577.4 377 72.4
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 1.0e-162 577.4 377 72.1
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 2.3e-162 576.2 461 63.6
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 2.9e-162 575.9 397 68.8
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 8.6e-162 574.3 451 63.0
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 1.9e-161 573.2 457 63.9
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 3.3e-161 572.4 457 63.9
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 4.3e-161 572.0 461 62.7
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 7.3e-161 571.2 375 70.4
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 9.5e-161 570.9 460 62.6
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 1.2e-160 570.5 462 61.0
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 3.6e-160 568.9 463 61.3
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 2.0e-158 563.1 470 60.6
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 5.7e-158 561.6 356 74.2
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 1.7e-157 560.1 492 59.6
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 4.1e-156 555.4 402 66.7
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 7.8e-155 551.2 378 68.3
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 5.0e-154 548.5 362 70.4
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 2.8e-152 542.7 360 72.5
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.4e-151 540.4 317 80.8
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 4.0e-151 538.9 369 69.6
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 4.0e-151 538.9 341 75.4
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 7.5e-150 534.6 347 70.3
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 9.5e-145 517.7 399 63.7
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 3.1e-143 512.7 332 70.5
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 6.0e-139 498.4 411 60.8
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 7.8e-139 498.0 330 72.1
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 8.9e-135 484.6 358 65.4
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 9.2e-132 474.6 341 68.6
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 3.5e-131 472.6 330 63.3
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 1.9e-129 466.8 284 73.9
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 1.0e-122 444.5 337 59.6
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 3.0e-122 443.0 335 63.9
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 7.3e-121 438.3 336 59.8
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 2.8e-120 436.4 309 68.3
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 1.1e-119 434.5 334 59.3
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 1.8e-119 433.7 273 75.1
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 4.6e-115 419.1 371 53.6
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 1.6e-112 410.6 247 78.1
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 2.6e-110 403.3 349 52.4
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 6.7e-90 335.5 280 61.1
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 3.3e-89 333.2 346 46.5
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 1.9e-84 317.4 279 59.5
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 9.4e-84 315.1 347 44.7
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 2.2e-77 293.9 328 47.3
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 2.1e-67 260.8 145 86.2
arahy.Tifrunner.gnm1.ann1.CI84PE Arachis hypogaea HOM05D004738 ORTHO05D006439 2.4e-55 220.7 196 59.2
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 2.4e-55 220.7 128 78.9
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 8.6e-37 159.1 164 44.5
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 4.3e-36 156.8 164 43.9
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 5.6e-36 156.4 166 51.8
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 9.5e-36 155.6 238 39.5
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 2.6e-33 147.5 81 84.0
Ah.09g223940 Amaranthus hybridus HOM05D004738 ORTHO05D001643 3.9e-29 133.7 94 72.3
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 1.9e-23 114.8 75 66.7
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 1.2e-22 112.1 104 54.8
Nn1g05393 Nelumbo nucifera HOM05D004738 ORTHO05D280673 4.1e-15 87.0 82 51.2
Pp3c21_6430 Physcomitrium patens HOM05D004738 ORTHO05D314778 1.8e-10 71.6 52 55.8


User provided reference genes

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